Rh2DG286300

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000218
Physical Location & Seq
Reverse (-)
33101379 .. 33130001
28623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG286300.1

Sequence Viewer

Length: 1083 bp
ATGGGGCCTTATAAATACCATACTGATATACAGATTAGACACCACATCCTATATTTTAATGTACTCCAAACCACGGAACCCATCTTCTTCTACTCATCTCTCTCCATCATCGTCTGCGTGTTCATCTCTCTAAAGCTGTTTGGACGGTGTCGTTACCCCAACCTCCCTCCAAGCCCTTCCTTATCTCTTCCGATACTCGGCCACCTCCATCTTCTTAAACCCCCAATCCACCGCACCTTCCACCGCCTCTCGCAGAAACATGGCCCCATCATCTCCCTCTGGTTCGGCTCCCGCCGCGTGGTCATTATCTCCTCCCCCTCGGCTGTGCAAGAATGCTTCACCAAAAATGACATCGTGTTGGCGAACCGTCCCCCCACACTATTAAGCAAGCACTTTGGGTACAATCAAACCACCTTGGTGGCCGCCCCCTACGGCGATCACTGGCGCAACGTTCGCCGTATCGGCACTGTCGAGGTCTTGTCTGCCGGCCGGCTCAACTCGTTCTCCGAAATCAGAAAAGTCGAAGTGAATCATTTGCTGCGCAAGCTTTCCCGACATGCAGAAGAAGAAGAAGAAGGTCGTTTTGTGAAAGTGGAGCTGAGGTCTATGTTGTTTGAGCTGACCTTCAACAACATAATGACCATGGTGGCGGGGAAGAGGTATGTCGGGAACCATGTTGCGAACAAGGAAGAGGGGAAGGAATTCATTGAGATCATGGATGAAGCTTTATCGTACAGTGGGGGAACCAACCCCGGAGAATTCATGCCCTTTTTGAAATGTTTTGGCGGTAATGGTTATGAGAGGAAGTTGAAGAAGTTGGGCAGGAGAGCAGATTTGTTCTTGCAGCGTCTAATTGATGAGCACCGGAACAAGAGTGCTTCAGAGAGTAAAAACACCATGATTGACCATTTGCTTTCTCAGCAGGAGTCACAACCTGGGTATTATACTGATGAGATTATCAAAGGACTTATACTGGAATTTATTTTTTTTGACAATAAAATCCCAAAGAGAGAGGGGGAGGTATCCAAATTAAACTTGCCTATGCTGCTAGTCTTGAGGGCTGGACAATATGGGGCCTTATAA

Protein Analysis

360

Amino Acids

41.33

Weight (kDa)

9.47

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 57 - 329 4.2e-33 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 12, 1081
Acc16I TGCGCA 1 cut(s) 542
AccII CGCG 1 cut(s) 297
AciI CCGC 7 cut(s) 232, 244, 292, 295, 423, 650, 786
AclI AACGTT 1 cut(s) 450
AcoI YGGCCR 3 cut(s) 199, 420, 487
AcsI RAATTY 3 cut(s) 701, 758, 977
AcuI CTGAAG 1 cut(s) 864
AfaI GTAC 3 cut(s) 63, 401, 734
AfiI CCNNNNNNNGG 3 cut(s) 73, 197, 298
AgsI TTSAA 3 cut(s) 628, 775, 811
AjnI CCWGG 1 cut(s) 934
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 5 cut(s) 136, 547, 598, 619, 725
AluI AGCT 5 cut(s) 136, 547, 598, 619, 725
Alw21I GWGCWC 1 cut(s) 864
AoxI GGCC 6 cut(s) 5, 199, 262, 420, 487, 1074
ApeKI GCWGC 3 cut(s) 538, 844, 1045
ApoI RAATTY 3 cut(s) 701, 758, 977
Asp700I GAANNNNTTC 1 cut(s) 701
AspLEI GCGC 2 cut(s) 447, 543
AspS9I GGNCC 3 cut(s) 5, 263, 1074
AsuC2I CCSGG 1 cut(s) 753
AsuHPI GGTGA 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 864
BbvCI CCTCAGC 1 cut(s) 599
BbvI GCAGC 3 cut(s) 525, 856, 1032
BccI CCATC 4 cut(s) 89, 113, 216, 275
BceAI ACGGC 2 cut(s) 441, 448
BciT130I CCWGG 1 cut(s) 936
BciVI GTATCC 1 cut(s) 1033
BcnI CCSGG 1 cut(s) 753
BfaI CTAG 1 cut(s) 1049
BfuI GTATCC 1 cut(s) 1033
BglI GCCNNNNNGGC 1 cut(s) 462
BisI GCNGC 5 cut(s) 295, 423, 539, 845, 1046
BlsI GCNGC 5 cut(s) 296, 424, 540, 846, 1047
Bme1390I CCNGG 2 cut(s) 753, 936
BmgT120I GGNCC 3 cut(s) 5, 263, 1074
BmiI GGNNCC 7 cut(s) 6, 78, 265, 289, 671, 745, 1075
BmrFI CCNGG 2 cut(s) 753, 936
Bpu10I CCTNAGC 1 cut(s) 599
BpuEI CTTGAG 1 cut(s) 1075
BpuMI CCSGG 1 cut(s) 753
BsaJI CCNNGG 6 cut(s) 72, 318, 414, 642, 751, 935
BsaWI WCCGGW 1 cut(s) 864
BsaXI ACNNNNNCTCC 4 cut(s) 488, 518, 587, 617
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 197, 298
Bse118I RCCGGY 2 cut(s) 485, 489
Bse1I ACTGG 2 cut(s) 446, 978
BseBI CCWGG 1 cut(s) 936
BseDI CCNNGG 6 cut(s) 72, 318, 414, 642, 751, 935
BseGI GGATG 2 cut(s) 45, 724
BseLI CCNNNNNNNGG 3 cut(s) 73, 197, 298
BseMII CTCAG 2 cut(s) 590, 932
BseNI ACTGG 2 cut(s) 446, 978
BseRI GAGGAG 1 cut(s) 301
BseX3I CGGCCG 1 cut(s) 487
BseXI GCAGC 3 cut(s) 525, 856, 1032
Bsh1236I CGCG 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 490
BshFI GGCC 6 cut(s) 7, 201, 264, 422, 489, 1076
BsiEI CGRYCG 1 cut(s) 490
BsiHKAI GWGCWC 1 cut(s) 864
BsiSI CCGG 4 cut(s) 486, 490, 753, 865
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 3 cut(s) 73, 197, 298
BsmFI GGGAC 1 cut(s) 354
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 6 cut(s) 7, 201, 264, 422, 489, 1076
Bsp1286I GDGCHC 1 cut(s) 864
Bsp143I GATC 2 cut(s) 436, 711
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 7 cut(s) 232, 244, 292, 295, 423, 650, 786
BspANI GGCC 6 cut(s) 7, 201, 264, 422, 489, 1076
BspCNI CTCAG 2 cut(s) 591, 931
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 7 cut(s) 6, 78, 265, 289, 671, 745, 1075
BsrFI RCCGGY 2 cut(s) 485, 489
BsrI ACTGG 2 cut(s) 446, 978
BssAI RCCGGY 2 cut(s) 485, 489
BssECI CCNNGG 6 cut(s) 72, 318, 414, 642, 751, 935
BssMI GATC 2 cut(s) 436, 711
BssT1I CCWWGG 2 cut(s) 414, 642
Bst2UI CCWGG 1 cut(s) 936
Bst4CI ACNGT 4 cut(s) 147, 368, 469, 737
Bst6I CTCTTC 3 cut(s) 192, 650, 684
BstC8I GCNNGC 4 cut(s) 389, 487, 491, 545
BstDEI CTNAG 2 cut(s) 599, 918
BstDSI CCRYGG 2 cut(s) 72, 642
BstF5I GGATG 2 cut(s) 45, 724
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 2 cut(s) 447, 543
BstKTI GATC 2 cut(s) 439, 714
BstMBI GATC 2 cut(s) 436, 711
BstMCI CGRYCG 1 cut(s) 490
BstMWI GCNNNNNNNGC 6 cut(s) 294, 453, 462, 544, 919, 1045
BstNI CCWGG 1 cut(s) 936
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 2 cut(s) 751, 934
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 3 cut(s) 525, 856, 1032
BstXI CCANNNNNNTGG 1 cut(s) 418
BstZI CGGCCG 1 cut(s) 487
BsuI GTATCC 1 cut(s) 1033
BsuRI GGCC 6 cut(s) 7, 201, 264, 422, 489, 1076
BtgI CCRYGG 2 cut(s) 72, 642
BtsCI GGATG 2 cut(s) 45, 724
BtsIMutI CAGTG 3 cut(s) 439, 465, 742
Cac8I GCNNGC 4 cut(s) 389, 487, 491, 545
CfoI GCGC 2 cut(s) 447, 543
Cfr10I RCCGGY 2 cut(s) 485, 489
Cfr13I GGNCC 3 cut(s) 5, 263, 1074
CseI GACGC 1 cut(s) 836
Csp6I GTAC 3 cut(s) 62, 400, 733
CviAII CATG 7 cut(s) 260, 557, 643, 674, 715, 763, 898
CviQI GTAC 3 cut(s) 62, 400, 733
DdeI CTNAG 2 cut(s) 599, 918
DpnI GATC 2 cut(s) 438, 713
DpnII GATC 2 cut(s) 436, 711
EaeI YGGCCR 3 cut(s) 199, 420, 487
EagI CGGCCG 1 cut(s) 487
Eam1104I CTCTTC 3 cut(s) 192, 650, 684
EarI CTCTTC 3 cut(s) 192, 650, 684
EclXI CGGCCG 1 cut(s) 487
Eco130I CCWWGG 2 cut(s) 414, 642
Eco52I CGGCCG 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 864
EcoO109I RGGNCCY 2 cut(s) 5, 1074
EcoRI GAATTC 2 cut(s) 701, 758
EcoRII CCWGG 1 cut(s) 934
EcoT14I CCWWGG 2 cut(s) 414, 642
ErhI CCWWGG 2 cut(s) 414, 642
FaeI CATG 7 cut(s) 263, 560, 646, 677, 718, 766, 901
FaqI GGGAC 1 cut(s) 354
FatI CATG 7 cut(s) 259, 556, 642, 673, 714, 762, 897
FauI CCCGC 2 cut(s) 299, 643
Fnu4HI GCNGC 5 cut(s) 295, 423, 539, 845, 1046
FokI GGATG 2 cut(s) 32, 731
Fsp4HI GCNGC 5 cut(s) 295, 423, 539, 845, 1046
FspBI CTAG 1 cut(s) 1049
FspI TGCGCA 1 cut(s) 542
GlaI GCGC 2 cut(s) 446, 542
GluI GCNGC 5 cut(s) 295, 423, 539, 845, 1046
HaeIII GGCC 6 cut(s) 7, 201, 264, 422, 489, 1076
HapII CCGG 4 cut(s) 486, 490, 753, 865
HgaI GACGC 1 cut(s) 836
HhaI GCGC 2 cut(s) 447, 543
Hin1II CATG 7 cut(s) 263, 560, 646, 677, 718, 766, 901
Hin6I GCGC 2 cut(s) 445, 541
HinP1I GCGC 2 cut(s) 445, 541
HindIII AAGCTT 2 cut(s) 545, 723
HinfI GANTC 2 cut(s) 529, 926
HpaII CCGG 4 cut(s) 486, 490, 753, 865
HphI GGTGA 1 cut(s) 331
Hpy188I TCNGA 4 cut(s) 192, 508, 515, 883
Hpy188III TCNNGA 3 cut(s) 552, 667, 1054
HpyAV CCTTC 5 cut(s) 186, 247, 569, 634, 691
HpyCH4III ACNGT 4 cut(s) 147, 368, 469, 737
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 3 cut(s) 328, 560, 844
HpyF10VI GCNNNNNNNGC 6 cut(s) 294, 453, 462, 544, 919, 1045
HpyF3I CTNAG 2 cut(s) 599, 918
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 7 cut(s) 263, 560, 646, 677, 718, 766, 901
HspAI GCGC 2 cut(s) 445, 541
KroI GCCGGC 2 cut(s) 485, 489
KroNI GCCGGC 2 cut(s) 487, 491
Kzo9I GATC 2 cut(s) 436, 711
LmnI GCTCC 2 cut(s) 293, 595
Lsp1109I GCAGC 3 cut(s) 525, 856, 1032
MaeI CTAG 1 cut(s) 1049
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 2 cut(s) 152, 927
MalI GATC 2 cut(s) 438, 713
MboI GATC 2 cut(s) 436, 711
MhlI GDGCHC 1 cut(s) 864
MluCI AATT 5 cut(s) 701, 758, 852, 977, 1028
MlyI GAGTC 1 cut(s) 935
MroNI GCCGGC 2 cut(s) 485, 489
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 4 cut(s) 57, 216, 383, 1031
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 4 cut(s) 486, 490, 753, 865
MspR9I CCNGG 2 cut(s) 753, 936
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 1 cut(s) 936
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 6 cut(s) 294, 453, 462, 544, 919, 1045
NaeI GCCGGC 2 cut(s) 487, 491
NciI CCSGG 1 cut(s) 753
NcoI CCATGG 1 cut(s) 642
NdeII GATC 2 cut(s) 436, 711
NgoMIV GCCGGC 2 cut(s) 485, 489
NlaIII CATG 7 cut(s) 263, 560, 646, 677, 718, 766, 901
NlaIV GGNNCC 7 cut(s) 6, 78, 265, 289, 671, 745, 1075
NmeAIII GCCGAG 2 cut(s) 177, 299
NmuCI GTSAC 1 cut(s) 927
NsbI TGCGCA 1 cut(s) 542
NspI RCATGY 1 cut(s) 560
OliI CACNNNNGTG 1 cut(s) 416
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PctI GAATGC 1 cut(s) 338
PdiI GCCGGC 2 cut(s) 487, 491
PdmI GAANNNNTTC 1 cut(s) 701
PfeI GAWTC 1 cut(s) 529
PflFI GACNNNGTC 1 cut(s) 147
PkrI GCNGC 5 cut(s) 296, 424, 540, 846, 1047
PleI GAGTC 1 cut(s) 934
PpsI GAGTC 1 cut(s) 934
PsiI TTATAA 2 cut(s) 12, 1081
Psp1406I AACGTT 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 934
PspGI CCWGG 1 cut(s) 934
PspN4I GGNNCC 7 cut(s) 6, 78, 265, 289, 671, 745, 1075
PspPI GGNCC 3 cut(s) 5, 263, 1074
PsyI GACNNNGTC 1 cut(s) 147
RsaI GTAC 3 cut(s) 63, 401, 734
RsaNI GTAC 3 cut(s) 62, 400, 733
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 4 cut(s) 57, 216, 383, 1031
SatI GCNGC 5 cut(s) 295, 423, 539, 845, 1046
Sau3AI GATC 2 cut(s) 436, 711
Sau96I GGNCC 3 cut(s) 5, 263, 1074
SchI GAGTC 1 cut(s) 935
ScrFI CCNGG 2 cut(s) 753, 936
SduI GDGCHC 1 cut(s) 864
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 1054
SmoI CTYRAG 1 cut(s) 1054
Sse9I AATT 5 cut(s) 701, 758, 852, 977, 1028
SsiI CCGC 7 cut(s) 232, 244, 292, 295, 423, 650, 786
SspMI CTAG 1 cut(s) 1049
StyD4I CCNGG 2 cut(s) 751, 934
StyI CCWWGG 2 cut(s) 414, 642
TaaI ACNGT 4 cut(s) 147, 368, 469, 737
TaiI ACGT 1 cut(s) 453
TaqI TCGA 2 cut(s) 471, 522
TasI AATT 5 cut(s) 701, 758, 852, 977, 1028
TatI WGTACW 1 cut(s) 61
TauI GCSGC 2 cut(s) 297, 425
TfiI GAWTC 1 cut(s) 529
Tru1I TTAA 4 cut(s) 57, 216, 383, 1031
Tru9I TTAA 4 cut(s) 57, 216, 383, 1031
TscAI CASTG 3 cut(s) 446, 472, 742
TseFI GTSAC 1 cut(s) 927
TseI GCWGC 3 cut(s) 538, 844, 1045
Tsp45I GTSAC 1 cut(s) 927
TspDTI ATGAA 4 cut(s) 112, 694, 735, 751
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 3 cut(s) 446, 472, 742
Tth111I GACNNNGTC 1 cut(s) 147
XapI RAATTY 3 cut(s) 701, 758, 977
XceI RCATGY 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 701
XspI CTAG 1 cut(s) 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.