Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Forward (+)

57508734 .. 57510983

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTGTATGAGCTAACCTTCAACAACATAATGACCATGGTGGCGGGGAAGAGATATGTTGAGGACCATGTTGCGAACAAGGAAGAGGGGAAAGAGTTCATTGAGATCATGGATGAGGCTTTTTCGTATAGTGGGGGAACCAACCCTGGAGAATTCATGCCCTTTTTGAGATGGTTTGGCGGTAATGCCTATGAGAGGAAGGTGAAGAAGTTGGGAAAGAGATCAGATTTGTTCTTGCAACATCTAATTGATGAGCATCGGAACAAGAGTGCTTCGGAGAGTAAAAATACCATGATTGACCATTTGCTTTCTCGGCAGGAGTCACAACCCGAGTATTACACGGATGAGATTATCAAAGGCCTTGTCTTGAGTCTATTATTGGCGGGCACCGAAACATTAGCAGTGACATTAGAATGGGTCATGTCTAATATGCTAAACTATCCCGATGTATTAGAGAAGGCTAGAGCTGAACTGGATGCTCAACTTGGTCAAGAACGCTTAGTAGACGAACCGAGACATCTCCAAGCTTCACTACCTACAAAGTATTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

184

Amino Acids

21.24

Weight (kDa)

5.19

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 167	1.8e-23	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	3 cut(s)	44, 180, 383
AcsI	RAATTY	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	3 cut(s)	13, 467, 527
AluI	AGCT	3 cut(s)	13, 467, 527
Alw26I	GTCTC	1 cut(s)	508
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	152
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
Asp700I	GAANNNNTTC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	386
BccI	CCATC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	139, 388
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	265, 466
BpmI	CTGGAG	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	388
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	36, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	36, 145
BseGI	GGATG	3 cut(s)	118, 349, 481
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	477
BseSI	GKGCMC	1 cut(s)	389
BshFI	GGCC	1 cut(s)	360
BshNI	GGYRCC	1 cut(s)	386
BsiHKCI	CYCGRG	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	2 cut(s)	105, 221
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	3 cut(s)	44, 180, 383
BspANI	GGCC	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	139, 388
BspT107I	GGYRCC	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	2 cut(s)	36, 145
BssMI	GATC	2 cut(s)	105, 221
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	147
Bst6I	CTCTTC	2 cut(s)	44, 78
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	1 cut(s)	499
BstDSI	CCRYGG	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	193
BstF5I	GGATG	3 cut(s)	118, 349, 481
BstKTI	GATC	2 cut(s)	108, 224
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	2 cut(s)	105, 221
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	118, 349, 481
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	64
CviAII	CATG	6 cut(s)	37, 68, 109, 157, 292, 421
CviJI	RGCY	6 cut(s)	13, 119, 360, 461, 467, 527
CviKI_1	RGCY	6 cut(s)	13, 119, 360, 461, 467, 527
DdeI	CTNAG	1 cut(s)	499
DpnI	GATC	2 cut(s)	107, 223
DpnII	GATC	2 cut(s)	105, 221
Eam1104I	CTCTTC	2 cut(s)	44, 78
EarI	CTCTTC	2 cut(s)	44, 78
Eco130I	CCWWGG	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	329
EcoNI	CCTNNNNNAGG	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	6 cut(s)	40, 71, 112, 160, 295, 424
FatI	CATG	6 cut(s)	36, 67, 108, 156, 291, 420
FauI	CCCGC	2 cut(s)	37, 376
FblI	GTMKAC	1 cut(s)	504
FokI	GGATG	3 cut(s)	125, 356, 488
FspBI	CTAG	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	360
Hin1II	CATG	6 cut(s)	40, 71, 112, 160, 295, 424
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	2 cut(s)	320, 370
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	4 cut(s)	226, 261, 277, 554
Hpy188III	TCNNGA	3 cut(s)	367, 443, 491
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	3 cut(s)	28, 193, 451
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	1 cut(s)	499
Hsp92II	CATG	6 cut(s)	40, 71, 112, 160, 295, 424
Kzo9I	GATC	2 cut(s)	105, 221
LpnPI	CCDG	4 cut(s)	132, 159, 302, 458
LweI	GCATC	2 cut(s)	265, 466
MaeI	CTAG	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	321, 403
MalI	GATC	2 cut(s)	107, 223
MboI	GATC	2 cut(s)	105, 221
MboII	GAAGA	3 cut(s)	61, 95, 217
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	2 cut(s)	152, 246
MlyI	GAGTC	2 cut(s)	329, 379
MnlI	CCTC	4 cut(s)	55, 79, 109, 189
MroXI	GAANNNNTTC	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	313
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	105, 221
NlaIII	CATG	6 cut(s)	40, 71, 112, 160, 295, 424
NlaIV	GGNNCC	2 cut(s)	139, 388
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	2 cut(s)	321, 403
PceI	AGGCCT	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	95
PleI	GAGTC	2 cut(s)	328, 378
PpsI	GAGTC	2 cut(s)	328, 378
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	139, 388
PspPI	GGNCC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	412
Sau3AI	GATC	2 cut(s)	105, 221
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	2 cut(s)	329, 379
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	389
SetI	ASST	6 cut(s)	15, 20, 204, 469, 529, 538
SfaNI	GCATC	2 cut(s)	265, 466
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	2 cut(s)	152, 246
SseBI	AGGCCT	1 cut(s)	360
SsiI	CCGC	3 cut(s)	44, 180, 383
SspMI	CTAG	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	36
TasI	AATT	2 cut(s)	152, 246
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	321, 403
Tsp45I	GTSAC	2 cut(s)	321, 403
TspDTI	ATGAA	2 cut(s)	88, 145
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	64
XagI	CCTNNNNNAGG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	504
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.