Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Reverse (-)

31515727 .. 31516461

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018540

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAAGACATCTTCTTCTACGTATCTCTCTCCATCATCAAACAAGGCCCTATCTTCTCCCTCTGGTTCGGCTCCCACTGCGTTGTCATTATCTCCTCCTCCTCAGCTGCGCAAGAATGCTTCACCAAAAATGACATCGTGTTGGCAAACCGTCCTCCCACGCTCCTAAGCAAGCACTTGAGTTACAACCAAACCACCCTGGTGAGTGCCCCTTACGGCAGTCACTGGCGTAACGTTCGTCGTATTGGCACTGCCGAGGTCTTGTCCACCGGCCGGCTCAACTCGTTATCCGATGTCAGAAAAGATGAAGTCAAGTATTTGCTGCACAAGCTTTCCCGACATGCAGAAGAAGAAGAAGGTCGTTTTGTGAAAGTGGAGTTGAGGTCTATGTTGTATGAGCTAACCTTCAACAACATAATGACCATGGTGGCGGGGAAGAGGTATGTTGGGGACCATGTTGCGAACAAGGAAGAGGGGAAAGAGTTCATTGAGATCATGGATGAGGCTTTTTCGTATAGTGGGGGAACCAACCCTGGAGAATTCATGCCCCTTTTGAGATGGTTTGGCGGTAATGCTTTGAGAGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

197

Amino Acids

22.24

Weight (kDa)

7.81

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	14 - 194	4e-18	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	111
AciI	CCGC	2 cut(s)	431, 567
AclI	AACGTT	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	539
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	409
AjnI	CCWGG	2 cut(s)	198, 532
AleI	CACNNNNGTG	1 cut(s)	200
AluBI	AGCT	3 cut(s)	107, 331, 400
AluI	AGCT	3 cut(s)	107, 331, 400
AlwNI	CAGNNNCTG	1 cut(s)	225
AoxI	GGCC	2 cut(s)	46, 271
ApeKI	GCWGC	2 cut(s)	107, 322
ApoI	RAATTY	1 cut(s)	539
Asp700I	GAANNNNTTC	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	47, 451
AsuHPI	GGTGA	2 cut(s)	115, 214
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	12
BbvCI	CCTCAGC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	94, 309
BccI	CCATC	2 cut(s)	41, 552
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	2 cut(s)	200, 534
BisI	GCNGC	2 cut(s)	108, 323
BlsI	GCNGC	2 cut(s)	109, 324
Bme1390I	CCNGG	2 cut(s)	200, 534
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	47, 451
BmiI	GGNNCC	3 cut(s)	73, 452, 526
BmrFI	CCNGG	2 cut(s)	200, 534
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	2 cut(s)	103, 167
BpuEI	CTTGAG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	22
BsaJI	CCNNGG	4 cut(s)	198, 255, 423, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse118I	RCCGGY	2 cut(s)	269, 273
Bse1I	ACTGG	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	200, 534
BseDI	CCNNGG	4 cut(s)	198, 255, 423, 532
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	3 cut(s)	85, 88, 91
BseSI	GKGCMC	1 cut(s)	211
BseX3I	CGGCCG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	94, 309
BsgI	GTGCAG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	48, 273
BsiEI	CGRYCG	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	270, 274
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	48, 273
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	492
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	2 cut(s)	431, 567
BspANI	GGCC	2 cut(s)	48, 273
BspCNI	CTCAG	1 cut(s)	116
BspLI	GGNNCC	3 cut(s)	73, 452, 526
BsrFI	RCCGGY	2 cut(s)	269, 273
BsrI	ACTGG	1 cut(s)	230
BssAI	RCCGGY	2 cut(s)	269, 273
BssECI	CCNNGG	4 cut(s)	198, 255, 423, 532
BssMI	GATC	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	200, 534
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	2 cut(s)	431, 465
BstBAI	YACGTR	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	173, 275
BstDEI	CTNAG	2 cut(s)	103, 167
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	1 cut(s)	495
BstMBI	GATC	1 cut(s)	492
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 328
BstNI	CCWGG	2 cut(s)	200, 534
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	198, 532
BstSLI	GKGCMC	1 cut(s)	211
BstSNI	TACGTA	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	94, 309
BstV2I	GAAGAC	1 cut(s)	12
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	48, 273
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	505
BtsI	GCAGTG	2 cut(s)	76, 249
BtsIMutI	CAGTG	3 cut(s)	76, 223, 249
Cac8I	GCNNGC	2 cut(s)	173, 275
CaiI	CAGNNNCTG	1 cut(s)	225
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	269, 273
Cfr13I	GGNCC	2 cut(s)	47, 451
CviAII	CATG	5 cut(s)	341, 424, 455, 496, 544
CviJI	RGCY	8 cut(s)	48, 72, 107, 273, 277, 331, 400, 506
CviKI_1	RGCY	8 cut(s)	48, 72, 107, 273, 277, 331, 400, 506
DdeI	CTNAG	2 cut(s)	103, 167
DpnI	GATC	1 cut(s)	494
DpnII	GATC	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	271
EagI	CGGCCG	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	431, 465
EarI	CTCTTC	2 cut(s)	431, 465
EclXI	CGGCCG	1 cut(s)	271
Eco105I	TACGTA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	451
Eco52I	CGGCCG	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	539
EcoRII	CCWGG	2 cut(s)	198, 532
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	5 cut(s)	344, 427, 458, 499, 547
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	5 cut(s)	340, 423, 454, 495, 543
FauI	CCCGC	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	108, 323
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	2 cut(s)	108, 323
FspI	TGCGCA	1 cut(s)	111
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	2 cut(s)	108, 323
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	48, 273
HapII	CCGG	2 cut(s)	270, 274
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	5 cut(s)	344, 427, 458, 499, 547
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	329
HpaII	CCGG	2 cut(s)	270, 274
HphI	GGTGA	2 cut(s)	115, 214
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	292, 299
Hpy188III	TCNNGA	1 cut(s)	336
Hpy8I	GTNNAC	1 cut(s)	267
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	3 cut(s)	350, 415, 579
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	2 cut(s)	21, 234
HpyCH4V	TGCA	2 cut(s)	325, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 328
HpyF3I	CTNAG	2 cut(s)	103, 167
HpySE526I	ACGT	2 cut(s)	21, 234
Hsp92II	CATG	5 cut(s)	344, 427, 458, 499, 547
HspAI	GCGC	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	273
KroNI	GCCGGC	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	492
LmnI	GCTCC	2 cut(s)	77, 168
LpnPI	CCDG	8 cut(s)	49, 185, 211, 212, 283, 287, 519, 546
Lsp1109I	GCAGC	2 cut(s)	94, 309
MaeII	ACGT	2 cut(s)	21, 234
MaeIII	GTNAC	3 cut(s)	182, 221, 230
MalI	GATC	1 cut(s)	494
MboI	GATC	1 cut(s)	492
MboII	GAAGA	9 cut(s)	4, 7, 17, 46, 359, 362, 365, 448, 482
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	1 cut(s)	539
MroNI	GCCGGC	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	270, 274
MspR9I	CCNGG	2 cut(s)	200, 534
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	2 cut(s)	200, 534
MwoI	GCNNNNNNNGC	2 cut(s)	78, 328
NaeI	GCCGGC	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	1 cut(s)	492
NgoMIV	GCCGGC	1 cut(s)	273
NlaIII	CATG	5 cut(s)	344, 427, 458, 499, 547
NlaIV	GGNNCC	3 cut(s)	73, 452, 526
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	221
NsbI	TGCGCA	1 cut(s)	111
NspI	RCATGY	1 cut(s)	344
OliI	CACNNNNGTG	1 cut(s)	200
PctI	GAATGC	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	482
PkrI	GCNGC	2 cut(s)	109, 324
Ppu21I	YACGTR	1 cut(s)	22
Psp1406I	AACGTT	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	198, 532
PspGI	CCWGG	2 cut(s)	198, 532
PspN4I	GGNNCC	3 cut(s)	73, 452, 526
PspPI	GGNCC	2 cut(s)	47, 451
PstNI	CAGNNNCTG	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	200
SatI	GCNGC	2 cut(s)	108, 323
Sau3AI	GATC	1 cut(s)	492
Sau96I	GGNCC	2 cut(s)	47, 451
ScrFI	CCNGG	2 cut(s)	200, 534
SduI	GDGCHC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
SnaBI	TACGTA	1 cut(s)	22
Sse9I	AATT	1 cut(s)	539
SsiI	CCGC	2 cut(s)	431, 567
StyD4I	CCNGG	2 cut(s)	198, 532
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	2 cut(s)	24, 237
TasI	AATT	1 cut(s)	539
TscAI	CASTG	3 cut(s)	83, 230, 256
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	107, 322
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	321, 475, 532
TspRI	CASTG	3 cut(s)	83, 230, 256
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	539
XceI	RCATGY	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.