FvH4_1g16920

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000218
Physical Location & Seq
Reverse (-)
9788511 .. 9789065
555 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16920.t1

Sequence Viewer

Length: 420 bp
ATGGTATTACTACAGGCGGGTACCGATACATCGGCAGCGGCACTAGAATGGATTGTGTCCAATCTTCTTAACCATCCTCATGTGTTGGAAAAGGCTAGAGTAGAACTGGACTCTCATCTCGGTCTAGATCGCTTGGTGGACGAGCCCGACGTCTCCAAGTTGCCTTACCTACAAAGCATCATTTCTGAAACCCTCCGACTTCATCCGCCGCCGCTTCTGGTGCCGCATTTTTCGTCCGATGATTGTACGATTGGGGGATTTGATGTGCCTCGTGACACTATGGTAATGGTTAATGCATGGGCGATACATAGAGACCATGAGTTGTGGGATGATCCAGAAAGCTTTAAGCCGGAGAGGTTCCAAAGTGGCGAGAATGACTCTTACAAATTCATGCCGTTTGGACGAGGAAGAAGAGCTTGA

Protein Analysis

140

Amino Acids

15.77

Weight (kDa)

5.09

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 139 5e-49 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
Acc65I GGTACC 1 cut(s) 20
AccB1I GGYRCC 2 cut(s) 20, 220
AciI CCGC 6 cut(s) 17, 38, 206, 209, 212, 224
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 22, 247
AluBI AGCT 2 cut(s) 342, 416
AluI AGCT 2 cut(s) 342, 416
Alw26I GTCTC 2 cut(s) 157, 306
AlwI GGATC 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 386
Asp718I GGTACC 1 cut(s) 20
BanI GGYRCC 2 cut(s) 20, 220
BanII GRGCYC 1 cut(s) 147
BauI CACGAG 1 cut(s) 270
BbvI GCAGC 1 cut(s) 47
BccI CCATC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 379
BcoDI GTCTC 2 cut(s) 157, 306
BfaI CTAG 3 cut(s) 44, 96, 125
BfmI CTRYAG 1 cut(s) 11
BisI GCNGC 5 cut(s) 36, 39, 209, 212, 224
BlsI GCNGC 5 cut(s) 37, 40, 210, 213, 225
BmiI GGNNCC 3 cut(s) 22, 222, 359
BmsI GCATC 1 cut(s) 186
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 111
BseGI GGATG 3 cut(s) 73, 202, 334
BseNI ACTGG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 47
BshNI GGYRCC 2 cut(s) 20, 220
BsiSI CCGG 1 cut(s) 350
BsmAI GTCTC 2 cut(s) 157, 306
BsmBI CGTCTC 1 cut(s) 157
Bso31I GGTCTC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 127, 331
BspACI CCGC 6 cut(s) 17, 38, 206, 209, 212, 224
BspLI GGNNCC 3 cut(s) 22, 222, 359
BspPI GGATC 1 cut(s) 326
BspQI GCTCTTC 1 cut(s) 406
BspT107I GGYRCC 2 cut(s) 20, 220
BspTNI GGTCTC 1 cut(s) 306
BsrI ACTGG 1 cut(s) 111
BssMI GATC 2 cut(s) 127, 331
BssNI GRCGYC 1 cut(s) 150
BssSI CACGAG 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 406
BstACI GRCGYC 1 cut(s) 150
BstF5I GGATG 3 cut(s) 73, 202, 334
BstKTI GATC 2 cut(s) 130, 334
BstMAI GTCTC 2 cut(s) 157, 306
BstMBI GATC 2 cut(s) 127, 331
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstSFI CTRYAG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 47
BtsCI GGATG 3 cut(s) 73, 202, 334
Csp6I GTAC 2 cut(s) 21, 246
CviAII CATG 4 cut(s) 80, 297, 317, 391
CviJI RGCY 5 cut(s) 95, 145, 342, 349, 416
CviKI_1 RGCY 5 cut(s) 95, 145, 342, 349, 416
CviQI GTAC 2 cut(s) 21, 246
DpnI GATC 2 cut(s) 129, 333
DpnII GATC 2 cut(s) 127, 331
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
EciI GGCGGA 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 4 cut(s) 83, 300, 320, 394
FaiI YATR 6 cut(s) 81, 281, 298, 309, 318, 392
FalI AAGNNNNNCTT 1 cut(s) 400
FatI CATG 4 cut(s) 79, 296, 316, 390
FauI CCCGC 1 cut(s) 10
Fnu4HI GCNGC 5 cut(s) 36, 39, 209, 212, 224
FokI GGATG 3 cut(s) 60, 189, 341
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 5 cut(s) 36, 39, 209, 212, 224
FspBI CTAG 3 cut(s) 44, 96, 125
GluI GCNGC 5 cut(s) 36, 39, 209, 212, 224
HapII CCGG 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 4 cut(s) 83, 300, 320, 394
HindIII AAGCTT 1 cut(s) 340
HinfI GANTC 2 cut(s) 110, 377
HpaII CCGG 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 187, 197, 238
Hpy188III TCNNGA 3 cut(s) 125, 272, 335
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 4 cut(s) 83, 300, 320, 394
KpnI GGTACC 1 cut(s) 24
Kzo9I GATC 2 cut(s) 127, 331
LguI GCTCTTC 1 cut(s) 406
LpnPI CCDG 4 cut(s) 92, 203, 348, 363
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 1 cut(s) 186
MaeI CTAG 3 cut(s) 44, 96, 125
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 272
MalI GATC 2 cut(s) 129, 333
MboI GATC 2 cut(s) 127, 331
MboII GAAGA 2 cut(s) 56, 420
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 1 cut(s) 386
MlyI GAGTC 2 cut(s) 104, 371
MmeI TCCRAC 2 cut(s) 66, 220
MnlI CCTC 5 cut(s) 87, 203, 279, 348, 398
Mph1103I ATGCAT 1 cut(s) 298
MseI TTAA 3 cut(s) 69, 291, 345
MslI CAYNNNNRTG 2 cut(s) 46, 78
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 1 cut(s) 350
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 2 cut(s) 127, 331
NlaIII CATG 4 cut(s) 83, 300, 320, 394
NlaIV GGNNCC 3 cut(s) 22, 222, 359
NmuCI GTSAC 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 406
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PkrI GCNGC 5 cut(s) 37, 40, 210, 213, 225
PleI GAGTC 2 cut(s) 104, 371
PpsI GAGTC 2 cut(s) 104, 371
PspN4I GGNNCC 3 cut(s) 22, 222, 359
RsaI GTAC 2 cut(s) 22, 247
RsaNI GTAC 2 cut(s) 21, 246
RseI CAYNNNNRTG 2 cut(s) 46, 78
SapI GCTCTTC 1 cut(s) 406
SaqAI TTAA 3 cut(s) 69, 291, 345
SatI GCNGC 5 cut(s) 36, 39, 209, 212, 224
Sau3AI GATC 2 cut(s) 127, 331
SchI GAGTC 2 cut(s) 104, 371
SduI GDGCHC 1 cut(s) 147
SetI ASST 5 cut(s) 153, 171, 344, 359, 418
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 11
SmiMI CAYNNNNRTG 2 cut(s) 46, 78
Sse9I AATT 1 cut(s) 386
SsiI CCGC 6 cut(s) 17, 38, 206, 209, 212, 224
SspMI CTAG 3 cut(s) 44, 96, 125
TaiI ACGT 1 cut(s) 153
TaqII GACCGA 1 cut(s) 110
TasI AATT 1 cut(s) 386
TauI GCSGC 4 cut(s) 41, 211, 214, 226
Tru1I TTAA 3 cut(s) 69, 291, 345
Tru9I TTAA 3 cut(s) 69, 291, 345
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 191, 379
XapI RAATTY 1 cut(s) 386
XbaI TCTAGA 1 cut(s) 124
XspI CTAG 3 cut(s) 44, 96, 125
ZraI GACGTC 1 cut(s) 151
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.