Rmu_co8030410.1_g000001

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8030410.1
OG0000218
Physical Location & Seq
Reverse (-)
2 .. 434
433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8030410.1_g000001.1.cds

Sequence Viewer

Length: 433 bp
atgtcctcctcaccctacggcgaccactggcgcaacgttcgccgtatcggcaccgtcgaggtcttgtccactggccggctcaactcgttctctgatgtccgaaaagacgaagtcaagcatttgctgcgcaagctctctcaaaacgcaggggaagaaggtggttttgtgaaagtggagctgaggtctatgttctatgagctgaccttcaacaacataatgacaatggtagcagggaagaggttcgcaggggaccatgttttgaacaaagaaaaggggaaggagttcattgagatcatgaacgagactctctcgttaggtgggggaaccaatcccggagaattcatgccctttctcaattggtttggcggtagtggttttgaagagaaggtgaagaagttggccaaaagagcagatgcgttctttcaacatctga

Protein Analysis

144

Amino Acids

16.32

Weight (kDa)

9.22

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 1 cut(s) 366
AclI AACGTT 1 cut(s) 36
AcoI YGGCCR 2 cut(s) 73, 399
AcsI RAATTY 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 4 cut(s) 208, 262, 380, 425
AluBI AGCT 3 cut(s) 133, 178, 199
AluI AGCT 3 cut(s) 133, 178, 199
Alw26I GTCTC 1 cut(s) 296
AoxI GGCC 2 cut(s) 73, 399
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 338
Asp700I GAANNNNTTC 2 cut(s) 239, 281
AspLEI GCGC 2 cut(s) 33, 129
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 2 cut(s) 3, 400
AvaII GGWCC 1 cut(s) 250
BalI TGGCCA 1 cut(s) 401
BanI GGYRCC 1 cut(s) 50
BbvCI CCTCAGC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 111
BceAI ACGGC 2 cut(s) 27, 34
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 296
BglI GCCNNNNNGGC 1 cut(s) 48
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 3 cut(s) 52, 251, 325
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 403
BplI GAGNNNNNCTC 2 cut(s) 293, 325
Bpu10I CCTNAGC 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 32, 76
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 2 cut(s) 32, 76
BseXI GCAGC 1 cut(s) 111
BshFI GGCC 2 cut(s) 75, 401
BshNI GGYRCC 1 cut(s) 50
BsiSI CCGG 2 cut(s) 76, 333
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 2 cut(s) 75, 401
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 1 cut(s) 366
BspANI GGCC 2 cut(s) 75, 401
BspCNI CTCAG 1 cut(s) 171
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 3 cut(s) 52, 251, 325
BspT107I GGYRCC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 2 cut(s) 32, 76
BssAI RCCGGY 1 cut(s) 75
BssMI GATC 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 2 cut(s) 230, 375
BstAPI GCANNNNNTGC 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 77, 131
BstDEI CTNAG 1 cut(s) 179
BstHHI GCGC 2 cut(s) 33, 129
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 5 cut(s) 39, 48, 124, 130, 407
BstSCI CCNGG 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 111
BsuRI GGCC 2 cut(s) 75, 401
BtsIMutI CAGTG 2 cut(s) 25, 69
Cac8I GCNNGC 2 cut(s) 77, 131
CciI TCATGA 1 cut(s) 294
CfoI GCGC 2 cut(s) 33, 129
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 250
CviAII CATG 3 cut(s) 254, 295, 343
CviJI RGCY 6 cut(s) 75, 79, 133, 178, 199, 401
CviKI_1 RGCY 6 cut(s) 75, 79, 133, 178, 199, 401
DdeI CTNAG 1 cut(s) 179
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EaeI YGGCCR 2 cut(s) 73, 399
Eam1104I CTCTTC 2 cut(s) 230, 375
EarI CTCTTC 2 cut(s) 230, 375
Eco47I GGWCC 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 338
FaeI CATG 3 cut(s) 257, 298, 346
FaiI YATR 6 cut(s) 188, 195, 215, 255, 296, 344
FaqI GGGAC 1 cut(s) 263
FatI CATG 3 cut(s) 253, 294, 342
Fnu4HI GCNGC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 125
FspI TGCGCA 1 cut(s) 128
GlaI GCGC 2 cut(s) 32, 128
GluI GCNGC 1 cut(s) 125
HaeIII GGCC 2 cut(s) 75, 401
HapII CCGG 2 cut(s) 76, 333
HhaI GCGC 2 cut(s) 33, 129
Hin1II CATG 3 cut(s) 257, 298, 346
Hin6I GCGC 2 cut(s) 31, 127
HinP1I GCGC 2 cut(s) 31, 127
HinfI GANTC 1 cut(s) 304
HpaII CCGG 2 cut(s) 76, 333
HphI GGTGA 2 cut(s) 3, 400
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 3 cut(s) 94, 101, 432
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 4 cut(s) 149, 214, 271, 379
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 48, 124, 130, 407
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 3 cut(s) 257, 298, 346
HspAI GCGC 2 cut(s) 31, 127
KroI GCCGGC 1 cut(s) 75
KroNI GCCGGC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 7 cut(s) 13, 57, 89, 132, 216, 231, 346
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 403
MaeII ACGT 1 cut(s) 36
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 4 cut(s) 164, 247, 392, 403
MfeI CAATTG 1 cut(s) 355
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 2 cut(s) 338, 355
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 5 cut(s) 16, 19, 52, 174, 231
Mox20I TGGCCA 1 cut(s) 401
MroNI GCCGGC 1 cut(s) 75
MroXI GAANNNNTTC 2 cut(s) 239, 281
MscI TGGCCA 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 401
MspI CCGG 2 cut(s) 76, 333
MspR9I CCNGG 1 cut(s) 333
MunI CAATTG 1 cut(s) 355
MwoI GCNNNNNNNGC 5 cut(s) 39, 48, 124, 130, 407
NaeI GCCGGC 1 cut(s) 77
NciI CCSGG 1 cut(s) 333
NdeII GATC 1 cut(s) 291
NgoMIV GCCGGC 1 cut(s) 75
NlaIII CATG 3 cut(s) 257, 298, 346
NlaIV GGNNCC 3 cut(s) 52, 251, 325
NsbI TGCGCA 1 cut(s) 128
PagI TCATGA 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdiI GCCGGC 1 cut(s) 77
PdmI GAANNNNTTC 2 cut(s) 239, 281
PflFI GACNNNGTC 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp1406I AACGTT 1 cut(s) 36
PspN4I GGNNCC 3 cut(s) 52, 251, 325
PspPI GGNCC 1 cut(s) 250
PsyI GACNNNGTC 1 cut(s) 110
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 333
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 1 cut(s) 250
Sse9I AATT 2 cut(s) 338, 355
SsiI CCGC 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 57
TasI AATT 2 cut(s) 338, 355
TscAI CASTG 2 cut(s) 32, 76
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 274, 311, 331
TspRI CASTG 2 cut(s) 32, 76
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 1 cut(s) 338
XmnI GAANNNNTTC 2 cut(s) 239, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.