Rh2DG197400

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
18178443 .. 18178871
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG197400.1

Sequence Viewer

Length: 429 bp
ATGATTATGTCAAATCTTCTTAACCATCCTCATGTGTTGAAAGAGGCTAGAGCCGAATTGGACTCTCATCTCGGCTTGGATCACTTGGTGGACGAACCCGATGTCTCCAAATTGCCTTACCTACAGAGCATTATTTTTGAAACCCTTCAGCTTTATCCGCAGCTGCTTTTGGTGCGGCATTTATCGTTCGATGATTGCGCGATCGGGGGATTCGATGCGCCTCGTGACACAATGGTAATGGTTAATGCGTGGGCAATACATAGAGATGCTAAGTTGTGGGATGATCCGGAAAGCTTTAAGCCCGAGAGGTTGAAAAATGGCGAGCATGACTCATACAAACTTATGCCATTTGGACTGGGAGGAAGGGCTTGCCCTGGAATGAGTCTAGCCCAACGTGTGGTAGGCCTAACTTTAGATTCAATGCTTTGA

Protein Analysis

142

Amino Acids

16.01

Weight (kDa)

5.36

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 142 6.3e-38 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 397
AccII CGCG 1 cut(s) 200
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 2 cut(s) 158, 175
AclWI GGATC 2 cut(s) 87, 278
AcuI CTGAAG 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 397
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 4 cut(s) 40, 140, 313, 420
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 3 cut(s) 151, 163, 294
AluI AGCT 3 cut(s) 151, 163, 294
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 2 cut(s) 87, 278
Ama87I CYCGRG 1 cut(s) 302
Aor13HI TCCGGA 1 cut(s) 286
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 2 cut(s) 160, 163
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
Asp700I GAANNNNTTC 1 cut(s) 144
AspLEI GCGC 2 cut(s) 200, 220
AvaI CYCGRG 1 cut(s) 302
BauI CACGAG 1 cut(s) 222
BbvI GCAGC 2 cut(s) 150, 172
BccI CCATC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 2 cut(s) 48, 386
BfmI CTRYAG 1 cut(s) 122
BisI GCNGC 3 cut(s) 161, 164, 176
BlsI GCNGC 3 cut(s) 162, 165, 177
Bme1390I CCNGG 1 cut(s) 375
BmeT110I CYCGRG 1 cut(s) 302
BmrFI CCNGG 1 cut(s) 375
BmrI ACTGGG 1 cut(s) 365
BmsI GCATC 2 cut(s) 205, 256
BmuI ACTGGG 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BsaJI CCNNGG 1 cut(s) 373
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse1I ACTGG 1 cut(s) 360
BseAI TCCGGA 1 cut(s) 286
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 2 cut(s) 25, 286
BseLI CCNNNNNNNGG 1 cut(s) 397
BseNI ACTGG 1 cut(s) 360
BseXI GCAGC 2 cut(s) 150, 172
Bsh1236I CGCG 1 cut(s) 200
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 405
BsiEI CGRYCG 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 1 cut(s) 405
BsoBI CYCGRG 1 cut(s) 302
Bsp13I TCCGGA 1 cut(s) 286
Bsp143I GATC 3 cut(s) 79, 201, 283
BspACI CCGC 2 cut(s) 158, 175
BspANI GGCC 1 cut(s) 405
BspEI TCCGGA 1 cut(s) 286
BspFNI CGCG 1 cut(s) 200
BspPI GGATC 2 cut(s) 87, 278
BsrI ACTGG 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 3 cut(s) 79, 201, 283
BssSI CACGAG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 323, 370
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 25, 286
BstFNI CGCG 1 cut(s) 200
BstHHI GCGC 2 cut(s) 200, 220
BstKTI GATC 3 cut(s) 82, 204, 286
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 3 cut(s) 79, 201, 283
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 157, 172
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 1 cut(s) 122
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 150, 172
BsuRI GGCC 1 cut(s) 405
BtsCI GGATG 2 cut(s) 25, 286
Cac8I GCNNGC 2 cut(s) 323, 370
CfoI GCGC 2 cut(s) 200, 220
CviAII CATG 2 cut(s) 32, 326
DdeI CTNAG 1 cut(s) 270
DpnI GATC 3 cut(s) 81, 203, 285
DpnII GATC 3 cut(s) 79, 201, 283
DraIII CACNNNGTG 1 cut(s) 88
Eco147I AGGCCT 1 cut(s) 405
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 373
FaeI CATG 2 cut(s) 35, 329
FaiI YATR 6 cut(s) 8, 33, 261, 327, 334, 344
FatI CATG 2 cut(s) 31, 325
Fnu4HI GCNGC 3 cut(s) 161, 164, 176
FokI GGATG 2 cut(s) 12, 293
Fsp4HI GCNGC 3 cut(s) 161, 164, 176
FspBI CTAG 2 cut(s) 48, 386
GlaI GCGC 2 cut(s) 199, 219
GluI GCNGC 3 cut(s) 161, 164, 176
HaeIII GGCC 1 cut(s) 405
HapII CCGG 1 cut(s) 287
HhaI GCGC 2 cut(s) 200, 220
Hin1II CATG 2 cut(s) 35, 329
Hin6I GCGC 2 cut(s) 198, 218
HinP1I GCGC 2 cut(s) 198, 218
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 5 cut(s) 62, 210, 329, 382, 416
HpaII CCGG 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 224, 287
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 155, 357
HpyCH4IV ACGT 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 172
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 394
Hsp92II CATG 2 cut(s) 35, 329
HspAI GCGC 2 cut(s) 198, 218
Kpn2I TCCGGA 1 cut(s) 286
Kzo9I GATC 3 cut(s) 79, 201, 283
LpnPI CCDG 4 cut(s) 300, 341, 360, 387
Lsp1109I GCAGC 2 cut(s) 150, 172
LweI GCATC 2 cut(s) 205, 256
MaeI CTAG 2 cut(s) 48, 386
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 1 cut(s) 224
MalI GATC 3 cut(s) 81, 203, 285
MboI GATC 3 cut(s) 79, 201, 283
MboII GAAGA 1 cut(s) 8
MluCI AATT 2 cut(s) 56, 110
MlyI GAGTC 3 cut(s) 56, 323, 391
MnlI CCTC 5 cut(s) 37, 39, 231, 300, 353
MroI TCCGGA 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 3 cut(s) 21, 243, 297
MslI CAYNNNNRTG 2 cut(s) 30, 264
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 157, 172
NdeII GATC 3 cut(s) 79, 201, 283
NlaIII CATG 2 cut(s) 35, 329
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 224
PceI AGGCCT 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 210, 416
PflMI CCANNNNNTGG 1 cut(s) 397
PkrI GCNGC 3 cut(s) 162, 165, 177
Ple19I CGATCG 1 cut(s) 204
PleI GAGTC 3 cut(s) 56, 323, 390
PpsI GAGTC 3 cut(s) 56, 323, 390
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PvuI CGATCG 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 163
RseI CAYNNNNRTG 2 cut(s) 30, 264
SaqAI TTAA 3 cut(s) 21, 243, 297
SatI GCNGC 3 cut(s) 161, 164, 176
Sau3AI GATC 3 cut(s) 79, 201, 283
SchI GAGTC 3 cut(s) 56, 323, 391
ScrFI CCNGG 1 cut(s) 375
SetI ASST 6 cut(s) 123, 153, 165, 296, 311, 397
SfaNI GCATC 2 cut(s) 205, 256
SfcI CTRYAG 1 cut(s) 122
SmiMI CAYNNNNRTG 2 cut(s) 30, 264
Sse9I AATT 2 cut(s) 56, 110
SseBI AGGCCT 1 cut(s) 405
SsiI CCGC 2 cut(s) 158, 175
SspMI CTAG 2 cut(s) 48, 386
StuI AGGCCT 1 cut(s) 405
StyD4I CCNGG 1 cut(s) 373
TaiI ACGT 1 cut(s) 397
TaqI TCGA 2 cut(s) 189, 213
TasI AATT 2 cut(s) 56, 110
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 2 cut(s) 210, 416
Tru1I TTAA 3 cut(s) 21, 243, 297
Tru9I TTAA 3 cut(s) 21, 243, 297
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 160, 163
Tsp45I GTSAC 1 cut(s) 224
Van91I CCANNNNNTGG 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 2 cut(s) 48, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.