Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Reverse (-)

18313739 .. 18314344

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48096

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCTTTTGGCGGGTACTGATTCGTCATCCTTGACACTGGAATGGGCCATGTCCAATCTGCTCAACCATCCTGAGGTGCTAAAAAGGGCTAGAGCTGAACTGGATGCTAAATTTGGACAAGAACGCTTAATAGATGAACCAGATATCTTCGAATTACCTTACCTACAAGGTATCATCTCTGAGACTCTCCGCTTGTACCCTACAGCACCACTACTAGTACCACATTATACATCTGATGACTGCACCATTGGAGGATTCGACGTGCCATGTGATACGATAGTAATGATCAACGCGTGGGCCATACACAGAGATCCAACATTGTGGGATGATCCTGAGAGCTTCAAGCCTGAGAGGTTTGCAAATGGTGGAGAAGAGCCATACAAGCTCATGCCATTTGGACAAGGAAGAAGGGCTTGCCCTGGTATGGGCTTGGCCCAACGTGTGGTTGGCTTAACTTTGGGATCATTGATTCAATGTTTCGAGTGGGAAAAAGTCAGTGAGATGAAGGTTGATATGAGTGAAGGTAAAGGACTCACAATGCCTAAAGCTGTGCCACTGGAGGCTATGTGCAAAGCCCGGCCAATTGTGAACAAGGTTCTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

201

Amino Acids

22.37

Weight (kDa)

4.95

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 182	2.4e-62	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	442
AccII	CGCG	1 cut(s)	293
AciI	CCGC	2 cut(s)	11, 190
AclWI	GGATC	3 cut(s)	305, 323, 469
AcoI	YGGCCR	1 cut(s)	578
AcsI	RAATTY	1 cut(s)	110
AfaI	GTAC	3 cut(s)	16, 197, 219
AfiI	CCNNNNNNNGG	4 cut(s)	73, 424, 425, 442
AflIII	ACRYGT	2 cut(s)	291, 439
AgsI	TTSAA	2 cut(s)	343, 473
AhlI	ACTAGT	1 cut(s)	214
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	4 cut(s)	95, 339, 385, 548
AluI	AGCT	4 cut(s)	95, 339, 385, 548
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	3 cut(s)	305, 323, 469
AoxI	GGCC	4 cut(s)	45, 297, 432, 578
ApoI	RAATTY	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	45, 297, 433
AsuC2I	CCSGG	1 cut(s)	577
AsuII	TTCGAA	1 cut(s)	150
AxyI	CCTNAGG	1 cut(s)	72
BaeI	ACNNNNGTAYC	2 cut(s)	264, 297
BccI	CCATC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	420
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	577
BcoDI	GTCTC	1 cut(s)	176
BcuI	ACTAGT	1 cut(s)	214
BfaI	CTAG	2 cut(s)	90, 215
BfmI	CTRYAG	1 cut(s)	201
Bme1390I	CCNGG	2 cut(s)	420, 577
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	3 cut(s)	45, 297, 433
BmrFI	CCNGG	2 cut(s)	420, 577
BmsI	GCATC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	578
Bpu14I	TTCGAA	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	577
BsaJI	CCNNGG	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	551, 581
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 424, 425, 442
Bse1I	ACTGG	3 cut(s)	42, 105, 561
Bse21I	CCTNAGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	4 cut(s)	26, 67, 109, 331
BseLI	CCNNNNNNNGG	4 cut(s)	73, 424, 425, 442
BseMII	CTCAG	4 cut(s)	63, 171, 324, 339
BseNI	ACTGG	3 cut(s)	42, 105, 561
BsgI	GTGCAG	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	4 cut(s)	47, 299, 434, 580
BsiSI	CCGG	1 cut(s)	577
BslI	CCNNNNNNNGG	4 cut(s)	73, 424, 425, 442
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	4 cut(s)	47, 299, 434, 580
Bsp119I	TTCGAA	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	285, 310, 328, 461
BspACI	CCGC	2 cut(s)	11, 190
BspANI	GGCC	4 cut(s)	47, 299, 434, 580
BspCNI	CTCAG	4 cut(s)	64, 172, 325, 340
BspFNI	CGCG	1 cut(s)	293
BspPI	GGATC	3 cut(s)	305, 323, 469
BspQI	GCTCTTC	1 cut(s)	366
BspT104I	TTCGAA	1 cut(s)	150
BsrI	ACTGG	3 cut(s)	42, 105, 561
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	4 cut(s)	285, 310, 328, 461
Bst2UI	CCWGG	1 cut(s)	420
Bst6I	CTCTTC	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	5 cut(s)	72, 180, 333, 348, 603
BstF5I	GGATG	4 cut(s)	26, 67, 109, 331
BstFNI	CGCG	1 cut(s)	293
BstKTI	GATC	4 cut(s)	288, 313, 331, 464
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	4 cut(s)	285, 310, 328, 461
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	2 cut(s)	418, 575
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	72
BsuRI	GGCC	4 cut(s)	47, 299, 434, 580
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	4 cut(s)	26, 67, 109, 331
BtsIMutI	CAGTG	3 cut(s)	35, 502, 554
Cac8I	GCNNGC	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	45, 297, 433
Csp6I	GTAC	3 cut(s)	15, 196, 218
CviAII	CATG	3 cut(s)	49, 267, 388
CviQI	GTAC	3 cut(s)	15, 196, 218
DdeI	CTNAG	5 cut(s)	72, 180, 333, 348, 603
DpnI	GATC	4 cut(s)	287, 312, 330, 463
DpnII	GATC	4 cut(s)	285, 310, 328, 461
EaeI	YGGCCR	1 cut(s)	578
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	145
Eco81I	CCTNAGG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	418
EcoRV	GATATC	1 cut(s)	145
FaeI	CATG	3 cut(s)	52, 270, 391
FaiI	YATR	9 cut(s)	50, 228, 268, 302, 379, 389, 425, 515, 566
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FatI	CATG	3 cut(s)	48, 266, 387
FauI	CCCGC	1 cut(s)	4
FbaI	TGATCA	1 cut(s)	285
FokI	GGATG	4 cut(s)	13, 54, 116, 338
FspBI	CTAG	2 cut(s)	90, 215
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	4 cut(s)	47, 299, 434, 580
HapII	CCGG	1 cut(s)	577
Hin1II	CATG	3 cut(s)	52, 270, 391
HinfI	GANTC	5 cut(s)	20, 184, 255, 469, 531
HpaII	CCGG	1 cut(s)	577
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	2 cut(s)	181, 235
Hpy188III	TCNNGA	2 cut(s)	71, 332
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	402, 499, 515
HpyCH4IV	ACGT	2 cut(s)	261, 439
HpyCH4V	TGCA	3 cut(s)	243, 359, 570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	5 cut(s)	72, 180, 333, 348, 603
HpySE526I	ACGT	2 cut(s)	261, 439
Hsp92II	CATG	3 cut(s)	52, 270, 391
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	285, 310, 328, 461
LguI	GCTCTTC	1 cut(s)	366
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	90, 215
MaeII	ACGT	2 cut(s)	261, 439
MalI	GATC	4 cut(s)	287, 312, 330, 463
MboI	GATC	4 cut(s)	285, 310, 328, 461
MboII	GAAGA	3 cut(s)	139, 383, 417
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	3 cut(s)	110, 152, 582
MluI	ACGCGT	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	178, 525
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	4 cut(s)	67, 245, 345, 553
MseI	TTAA	2 cut(s)	128, 452
MslI	CAYNNNNRTG	1 cut(s)	40
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	2 cut(s)	420, 577
MunI	CAATTG	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	382
NciI	CCSGG	1 cut(s)	577
NdeII	GATC	4 cut(s)	285, 310, 328, 461
NlaIII	CATG	3 cut(s)	52, 270, 391
NspV	TTCGAA	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	366
PfeI	GAWTC	3 cut(s)	20, 255, 469
PflMI	CCANNNNNTGG	1 cut(s)	442
PleI	GAGTC	2 cut(s)	178, 525
PpsI	GAGTC	2 cut(s)	178, 525
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspPI	GGNCC	3 cut(s)	45, 297, 433
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	3 cut(s)	16, 197, 219
RsaNI	GTAC	3 cut(s)	15, 196, 218
RseI	CAYNNNNRTG	1 cut(s)	40
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	128, 452
Sau3AI	GATC	4 cut(s)	285, 310, 328, 461
Sau96I	GGNCC	3 cut(s)	45, 297, 433
SchI	GAGTC	2 cut(s)	178, 525
ScrFI	CCNGG	2 cut(s)	420, 577
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	40
SpeI	ACTAGT	1 cut(s)	214
Sse9I	AATT	3 cut(s)	110, 152, 582
SsiI	CCGC	2 cut(s)	11, 190
SspMI	CTAG	2 cut(s)	90, 215
StyD4I	CCNGG	2 cut(s)	418, 575
TaiI	ACGT	2 cut(s)	264, 442
TaqI	TCGA	3 cut(s)	150, 258, 480
TasI	AATT	3 cut(s)	110, 152, 582
TfiI	GAWTC	3 cut(s)	20, 255, 469
Tru1I	TTAA	2 cut(s)	128, 452
Tru9I	TTAA	2 cut(s)	128, 452
TscAI	CASTG	3 cut(s)	42, 502, 561
TspDTI	ATGAA	2 cut(s)	150, 518
TspRI	CASTG	3 cut(s)	42, 502, 561
Van91I	CCANNNNNTGG	1 cut(s)	442
XapI	RAATTY	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XspI	CTAG	2 cut(s)	90, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.