Rh2AG279600

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
33675934 .. 33676497
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG279600.1

Sequence Viewer

Length: 564 bp
ATGTCCAATTTGCTAAACCATCCAAATGTGTTAGAGATGGCTAGAGCCGAATTGGATGCTCAAATTGGTCAAGAGCGCTTAGTAGACGAATCAGACCTCTCCAATCTTCAATACCTGCAAAGTATCATTTCTGAGACTCTTCGGTTGTACCCAGCAGCACCGATGCTAGTACCACATTTTGCATCTGATGACTGTGTTGTTACCGGATTCAATATACCACGTAACACAACGGTATTGGTCAATGCTTGGGCCATACATAGAGACCCGAAGTTGTGGGATGACCCTGAAAGCTTCAAACCTGAAAGGTTTGAAATCGGCAAAAACGATGAGGCACGTAAACTAATGCCGTTTGGAATGGGAAGAAGGGCATGTCCTGGAGCAGGCTTGGCCCAACGTGAGGTGGGATTGACTTTGGCTTCATTAATTCAATGCTTTGAGTGGGGGAGGGTCAGTGATAAGAAGGTTGATATGACTGAATTAGGAAAGGGAGCCATCATGCATAAACTTCAACCATTGGAGGTCATGTGCAAACCACGCTCATTTATGAAAAATGTTGTTCATTGA

Protein Analysis

187

Amino Acids

21.07

Weight (kDa)

6.21

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 168 2.4e-54 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 84
AfaI GTAC 2 cut(s) 149, 171
AfeI AGCGCT 1 cut(s) 77
AfiI CCNNNNNNNGG 2 cut(s) 380, 397
AgsI TTSAA 6 cut(s) 110, 211, 295, 311, 428, 509
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 128, 255
Aor51HI AGCGCT 1 cut(s) 77
AoxI GGCC 2 cut(s) 249, 387
ApeKI GCWGC 1 cut(s) 155
AseI ATTAAT 1 cut(s) 422
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 249, 388
BbvI GCAGC 1 cut(s) 167
BccI CCATC 3 cut(s) 27, 31, 500
BceAI ACGGC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 1 cut(s) 375
BcoDI GTCTC 2 cut(s) 128, 255
BfaI CTAG 2 cut(s) 42, 167
BfoI RGCGCY 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 123
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 375
BmgT120I GGNCC 2 cut(s) 249, 388
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 3 cut(s) 46, 153, 191
BpmI CTGGAG 1 cut(s) 396
BsaAI YACGTR 2 cut(s) 221, 335
BsaI GGTCTC 1 cut(s) 255
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 4 cut(s) 436, 466, 509, 539
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 397
BseBI CCWGG 1 cut(s) 375
BseGI GGATG 3 cut(s) 19, 61, 283
BseLI CCNNNNNNNGG 2 cut(s) 380, 397
BseMII CTCAG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 167
BseYI CCCAGC 1 cut(s) 151
BshFI GGCC 2 cut(s) 251, 389
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 380, 397
BsmAI GTCTC 2 cut(s) 128, 255
BsnI GGCC 2 cut(s) 251, 389
Bso31I GGTCTC 1 cut(s) 255
BspANI GGCC 2 cut(s) 251, 389
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 2 cut(s) 194, 232
Bst6I CTCTTC 1 cut(s) 144
BstBAI YACGTR 2 cut(s) 221, 335
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 2 cut(s) 79, 132
BstENI CCTNNNNNAGG 1 cut(s) 378
BstF5I GGATG 3 cut(s) 19, 61, 283
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 1 cut(s) 78
BstMAI GTCTC 2 cut(s) 128, 255
BstMWI GCNNNNNNNGC 2 cut(s) 386, 534
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 167
BsuRI GGCC 2 cut(s) 251, 389
BtsCI GGATG 3 cut(s) 19, 61, 283
BtsIMutI CAGTG 1 cut(s) 457
BveI ACCTGC 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 382
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 249, 388
Csp6I GTAC 2 cut(s) 148, 170
CviAII CATG 3 cut(s) 369, 496, 523
CviJI RGCY 8 cut(s) 41, 47, 251, 291, 384, 389, 416, 491
CviKI_1 RGCY 8 cut(s) 41, 47, 251, 291, 384, 389, 416, 491
CviQI GTAC 2 cut(s) 148, 170
DdeI CTNAG 2 cut(s) 79, 132
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 255
Eco47III AGCGCT 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 501
FaeI CATG 3 cut(s) 372, 499, 526
FaiI YATR 9 cut(s) 215, 254, 258, 370, 470, 497, 501, 524, 545
FatI CATG 3 cut(s) 368, 495, 522
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 3 cut(s) 6, 68, 290
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 2 cut(s) 42, 167
GlaI GCGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 156
GsaI CCCAGC 1 cut(s) 155
GsuI CTGGAG 1 cut(s) 396
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 2 cut(s) 251, 389
HapII CCGG 1 cut(s) 204
HhaI GCGC 1 cut(s) 78
Hin1II CATG 3 cut(s) 372, 499, 526
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 289
HinfI GANTC 3 cut(s) 89, 136, 207
HpaII CCGG 1 cut(s) 204
Hpy166II GTNNAC 2 cut(s) 85, 338
Hpy188I TCNGA 3 cut(s) 94, 133, 187
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 2 cut(s) 85, 338
HpyAV CCTTC 2 cut(s) 357, 454
HpyCH4III ACNGT 2 cut(s) 194, 232
HpyCH4IV ACGT 3 cut(s) 220, 334, 394
HpyCH4V TGCA 4 cut(s) 118, 182, 499, 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 534
HpyF3I CTNAG 2 cut(s) 79, 132
HpySE526I ACGT 3 cut(s) 220, 334, 394
Hsp92II CATG 3 cut(s) 372, 499, 526
HspAI GCGC 1 cut(s) 76
LmnI GCTCC 2 cut(s) 377, 488
LpnPI CCDG 8 cut(s) 128, 165, 217, 297, 312, 360, 366, 387
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 3 cut(s) 46, 153, 191
MaeI CTAG 2 cut(s) 42, 167
MaeII ACGT 3 cut(s) 220, 334, 394
MaeIII GTNAC 2 cut(s) 199, 221
MboII GAAGA 3 cut(s) 98, 131, 372
MluCI AATT 5 cut(s) 7, 50, 63, 423, 476
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 5 cut(s) 107, 322, 391, 438, 511
Mph1103I ATGCAT 1 cut(s) 501
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 1 cut(s) 24
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 386, 534
NlaIII CATG 3 cut(s) 372, 499, 526
NlaIV GGNNCC 1 cut(s) 490
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 2 cut(s) 89, 207
PfoI TCCNGGA 1 cut(s) 373
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Ppu21I YACGTR 2 cut(s) 221, 335
PshBI ATTAAT 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 2 cut(s) 249, 388
RsaI GTAC 2 cut(s) 149, 171
RsaNI GTAC 2 cut(s) 148, 170
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 1 cut(s) 156
Sau96I GGNCC 2 cut(s) 249, 388
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 375
SfaNI GCATC 3 cut(s) 46, 153, 191
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 5 cut(s) 7, 50, 63, 423, 476
SspMI CTAG 2 cut(s) 42, 167
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 2 cut(s) 194, 232
TaiI ACGT 3 cut(s) 223, 337, 397
TasI AATT 5 cut(s) 7, 50, 63, 423, 476
TfiI GAWTC 2 cut(s) 89, 207
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 1 cut(s) 457
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 408, 548, 560
TspRI CASTG 1 cut(s) 457
VspI ATTAAT 1 cut(s) 422
XagI CCTNNNNNAGG 1 cut(s) 378
XceI RCATGY 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 2 cut(s) 42, 167
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.