Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Reverse (-)

9791876 .. 9792229

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16921.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGTGAGTGACCAAATCCCCCCTGGTACTGACCAGGTGAACGGGACTGAAGATCGTTTAATTGATGAGCTTGATGTCCCTGACACAATGGTCTTGATCAATGTATGGGCTATACATAGAGACCCTGAGCTATGGAAGGAACTCGAAAGCTTTAAGCCTGAGAGGTTTGAAAGAGGGCGAAGAGCTTGCCCGGGAGCAGGCCTCGCCCAACGTGTGTTGAGCTTCACTTTGGGGTCGTTGATACAATGCTTTGAATGGGAGAGAACTGGTGAAGAAGAGATCGATGACTGGTCACCATGCATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

103

Amino Acids

11.73

Weight (kDa)

4.42

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	18 - 92	4.2e-13	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	170, 254
AjnI	CCWGG	2 cut(s)	22, 33
AluBI	AGCT	5 cut(s)	70, 130, 150, 185, 222
AluI	AGCT	5 cut(s)	70, 130, 150, 185, 222
Alw26I	GTCTC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	190
AoxI	GGCC	1 cut(s)	199
AsuC2I	CCSGG	2 cut(s)	191, 192
AsuHPI	GGTGA	4 cut(s)	16, 49, 281, 285
AvaI	CYCGRG	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BciT130I	CCWGG	2 cut(s)	24, 35
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	2 cut(s)	191, 192
BcoDI	GTCTC	1 cut(s)	114
Bme1390I	CCNGG	4 cut(s)	24, 35, 191, 192
BmeT110I	CYCGRG	1 cut(s)	190
BmrFI	CCNGG	4 cut(s)	24, 35, 191, 192
BplI	GAGNNNNNCTC	2 cut(s)	186, 218
Bpu10I	CCTNAGC	1 cut(s)	126
BpuMI	CCSGG	2 cut(s)	191, 192
Bsa29I	ATCGAT	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	22, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	271, 293
BseBI	CCWGG	2 cut(s)	24, 35
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	22, 190
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	2 cut(s)	117, 150
BseNI	ACTGG	2 cut(s)	271, 293
BshFI	GGCC	1 cut(s)	201
BshVI	ATCGAT	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	58, 62
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	58, 62
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	52, 96, 279
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	118, 151
BspDI	ATCGAT	1 cut(s)	282
BspQI	GCTCTTC	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	271, 293
BssECI	CCNNGG	2 cut(s)	22, 190
BssMI	GATC	3 cut(s)	52, 96, 279
Bst2UI	CCWGG	2 cut(s)	24, 35
Bst6I	CTCTTC	2 cut(s)	175, 270
BstC8I	GCNNGC	2 cut(s)	187, 199
BstDEI	CTNAG	2 cut(s)	126, 159
BstEII	GGTNACC	1 cut(s)	291
BstKTI	GATC	3 cut(s)	55, 99, 282
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	52, 96, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	2 cut(s)	24, 35
BstPI	GGTNACC	1 cut(s)	291
BstSCI	CCNGG	4 cut(s)	22, 33, 189, 190
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	187, 199
Cfr9I	CCCGGG	1 cut(s)	190
ClaI	ATCGAT	1 cut(s)	282
CsiI	ACCWGGT	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	297
CviJI	RGCY	8 cut(s)	70, 110, 130, 150, 157, 185, 201, 222
CviKI_1	RGCY	8 cut(s)	70, 110, 130, 150, 157, 185, 201, 222
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	2 cut(s)	126, 159
DpnI	GATC	3 cut(s)	54, 98, 281
DpnII	GATC	3 cut(s)	52, 96, 279
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	2 cut(s)	175, 270
EarI	CTCTTC	2 cut(s)	175, 270
Eco147I	AGGCCT	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	190
Eco91I	GGTNACC	1 cut(s)	291
EcoO65I	GGTNACC	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	22, 33
EcoT22I	ATGCAT	1 cut(s)	302
FaeI	CATG	1 cut(s)	300
FaiI	YATR	6 cut(s)	106, 113, 117, 133, 298, 302
FaqI	GGGAC	2 cut(s)	58, 62
FatI	CATG	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	148
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	4 cut(s)	16, 49, 281, 285
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	126, 159
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	52, 96, 279
LguI	GCTCTTC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	194
MabI	ACCWGGT	1 cut(s)	33
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	2 cut(s)	8, 291
MalI	GATC	3 cut(s)	54, 98, 281
MboI	GATC	3 cut(s)	52, 96, 279
MboII	GAAGA	4 cut(s)	62, 192, 284, 287
MluCI	AATT	1 cut(s)	60
MnlI	CCTC	3 cut(s)	156, 167, 212
Mph1103I	ATGCAT	1 cut(s)	302
MseI	TTAA	2 cut(s)	59, 153
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	4 cut(s)	24, 35, 191, 192
MvaI	CCWGG	2 cut(s)	24, 35
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	2 cut(s)	191, 192
NdeII	GATC	3 cut(s)	52, 96, 279
NlaIII	CATG	1 cut(s)	300
NmuCI	GTSAC	2 cut(s)	8, 291
NsiI	ATGCAT	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	22, 33
PspEI	GGTNACC	1 cut(s)	291
PspGI	CCWGG	2 cut(s)	22, 33
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	59, 153
Sau3AI	GATC	3 cut(s)	52, 96, 279
ScrFI	CCNGG	4 cut(s)	24, 35, 191, 192
SetI	ASST	8 cut(s)	39, 72, 132, 152, 167, 187, 214, 224
SexAI	ACCWGGT	1 cut(s)	33
SmaI	CCCGGG	1 cut(s)	192
Sse9I	AATT	1 cut(s)	60
SseBI	AGGCCT	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	4 cut(s)	22, 33, 189, 190
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	144, 282
TasI	AATT	1 cut(s)	60
Tru1I	TTAA	2 cut(s)	59, 153
Tru9I	TTAA	2 cut(s)	59, 153
TseFI	GTSAC	2 cut(s)	8, 291
Tsp45I	GTSAC	2 cut(s)	8, 291
TspMI	CCCGGG	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XmaI	CCCGGG	1 cut(s)	190
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.