Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Forward (+)

74447772 .. 74448095

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGATCAACGTTTGGACCATACATAGAGATCCTAAGTTGTGGGATGATCCAGAAAGCTTCAAGCCTGAAAGGTTTGCAAATGGTGGAGAAGAGCCATACAAGCTCATGCCATTTGGACAAGGAAGAAGGGCTTGCCCTGGTATAGGTATGGCCCAACGTGTGGTTGGCTTCACTTTGGGATCATTGATTCAATGTTTCGAGTGGGAAGGAGTCGGTGAGATGAAGGTTGATATGAGGGAAGGTAAAGGACTCACAATGCCTAAAGCTGCGCCACTAGAGGCTATGTGCAAAGCACGCCCAATTGTGAACAAGGTTCTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

107

Amino Acids

11.98

Weight (kDa)

8.52

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 88	6.1e-24	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	3 cut(s)	23, 41, 187
AfiI	CCNNNNNNNGG	2 cut(s)	143, 160
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	61, 191
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	3 cut(s)	57, 103, 266
AluI	AGCT	3 cut(s)	57, 103, 266
AlwI	GGATC	3 cut(s)	23, 41, 187
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	2 cut(s)	15, 151
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	138
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	15, 151
BmrFI	CCNGG	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 160
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	143, 160
BseXI	GCAGC	1 cut(s)	253
BshFI	GGCC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	143, 160
BsnI	GGCC	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	3, 28, 46, 179
BspANI	GGCC	1 cut(s)	152
BspPI	GGATC	3 cut(s)	23, 41, 187
BspQI	GCTCTTC	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	4 cut(s)	3, 28, 46, 179
Bst2UI	CCWGG	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	133, 295
BstDEI	CTNAG	2 cut(s)	33, 321
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	4 cut(s)	6, 31, 49, 182
BstMBI	GATC	4 cut(s)	3, 28, 46, 179
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 294
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	133, 295
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	15, 151
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	9 cut(s)	57, 64, 94, 103, 131, 152, 168, 266, 281
CviKI_1	RGCY	9 cut(s)	57, 64, 94, 103, 131, 152, 168, 266, 281
DdeI	CTNAG	2 cut(s)	33, 321
DpnI	GATC	4 cut(s)	5, 30, 48, 181
DpnII	GATC	4 cut(s)	3, 28, 46, 179
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	136
FaeI	CATG	1 cut(s)	109
FaiI	YATR	8 cut(s)	20, 24, 97, 107, 143, 149, 233, 284
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
FatI	CATG	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	3 cut(s)	187, 210, 249
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	4 cut(s)	120, 200, 217, 233
HpyCH4IV	ACGT	2 cut(s)	9, 157
HpyCH4V	TGCA	2 cut(s)	77, 288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 294
HpyF3I	CTNAG	2 cut(s)	33, 321
HpySE526I	ACGT	2 cut(s)	9, 157
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 28, 46, 179
LguI	GCTCTTC	1 cut(s)	84
LpnPI	CCDG	4 cut(s)	63, 78, 123, 150
Lsp1109I	GCAGC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	2 cut(s)	9, 157
MalI	GATC	4 cut(s)	5, 30, 48, 181
MboI	GATC	4 cut(s)	3, 28, 46, 179
MboII	GAAGA	2 cut(s)	101, 135
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	219, 243
MnlI	CCTC	2 cut(s)	228, 271
MspR9I	CCNGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	100, 294
NdeII	GATC	4 cut(s)	3, 28, 46, 179
NlaIII	CATG	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	187
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	2 cut(s)	218, 243
PpsI	GAGTC	2 cut(s)	218, 243
Psp1406I	AACGTT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	15, 151
PsuI	RGATCY	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	84
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	4 cut(s)	3, 28, 46, 179
Sau96I	GGNCC	2 cut(s)	15, 151
SchI	GAGTC	2 cut(s)	219, 243
ScrFI	CCNGG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	15
Sse9I	AATT	1 cut(s)	300
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	136
TaiI	ACGT	2 cut(s)	12, 160
TaqI	TCGA	1 cut(s)	198
TasI	AATT	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	15
XagI	CCTNNNNNAGG	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.