Rorug02G0139200

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000218
Physical Location & Seq
Forward (+)
12274426 .. 12276602
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0139200.1

Sequence Viewer

Length: 855 bp
ATGACATCATCAACCGCCATTAGTTTTCTCCAACCCAAACTCCAATTCTTCCCCTGTCGTTTTTGCAGCCTCAAATCGTTAAAACCCTTCTCCTCTCTCAAATTTCCCATATCGAAATTGGCCTTCTCCGGTGGATTAGACCCCAAGAAAGCTCCTCCACTTAGAAACAGGTTCATGGGTTCCAACAATAGCATGCTTGAGCTCATAAATTTGCTCCCTTTTCGGAACAACGCTAATGGCCACGAAACTGTTAGGGTGCTCCATTCGTCTGAGGATTCGGGCCCTGGAATTGCGGATAATGGGCTCGAGTCCACTGTCAATCGATTGAGTAAGTGGCTTGTGTCTGGCCTTTTTGCTGTGGTGATACTATGTAGGCATGATGCAGAAGCTTTGTGGGCTGCAATGGGGTCTGTGGTGAATTCCACACTCTCTATTGTACTAAAAAAGATACTAAATCAAGAGAGGCCTATTCCTTCTTTGAGATCTGAGCCTGGAATGCCGTCTTCGCATTCCCAATCCATCTCCTACATTTTTATGTTTGCAATTTTTTCATTTGTGGAATGGCTGGGGATAAATGAGATTACCATAATTATTGGTGCTCTTGCCTTGGCATTTGGTGCATATCTTTCGTGGTTACGAGTTTCGCAGCGACTTCATACGATGAGCCAAGTGGTTGTGGGTGCTGCAATTGGAACCATCTTCTCCATTTTGTGGTACTGGTCATGGAATGCTGTTGTGCATGAAGCATTTACTTCCTTTTTGTGGGTTCGAATAGTTGTTGTTTTGGGGGCAGCTGGATTTTGTGCAGGATTCCTTTTGTATGTGATTCGTTATTGGATTAGGGATGACCGATGA

Protein Analysis

284

Amino Acids

31.61

Weight (kDa)

9.65

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 163 - 243 2.5e-09 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 711
AciI CCGC 2 cut(s) 15, 293
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 3 cut(s) 101, 208, 418
AfaI GTAC 2 cut(s) 438, 716
AfiI CCNNNNNNNGG 2 cut(s) 711, 762
AjnI CCWGG 2 cut(s) 283, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 4 cut(s) 152, 202, 389, 794
AluI AGCT 4 cut(s) 152, 202, 389, 794
Alw21I GWGCWC 3 cut(s) 204, 261, 601
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 5 cut(s) 120, 238, 280, 346, 464
ApaI GGGCCC 1 cut(s) 284
ApeKI GCWGC 5 cut(s) 66, 398, 646, 683, 791
ApoI RAATTY 3 cut(s) 101, 208, 418
AspS9I GGNCC 2 cut(s) 280, 281
AsuHPI GGTGA 2 cut(s) 373, 427
AsuII TTCGAA 1 cut(s) 769
AvaI CYCGRG 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 284
BalI TGGCCA 1 cut(s) 240
BanII GRGCYC 3 cut(s) 204, 284, 306
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 3 cut(s) 204, 261, 601
BbvI GCAGC 5 cut(s) 78, 385, 658, 670, 803
BccI CCATC 2 cut(s) 527, 704
BceAI ACGGC 1 cut(s) 484
BcgI CGANNNNNNTGC 2 cut(s) 609, 643
BciT130I CCWGG 2 cut(s) 285, 492
BglII AGATCT 1 cut(s) 482
BisI GCNGC 5 cut(s) 67, 399, 647, 684, 792
BlsI GCNGC 5 cut(s) 68, 400, 648, 685, 793
Bme1390I CCNGG 2 cut(s) 285, 492
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 2 cut(s) 280, 281
BmiI GGNNCC 3 cut(s) 181, 282, 694
BmrFI CCNGG 2 cut(s) 285, 492
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 495
Bpu14I TTCGAA 1 cut(s) 769
BpuEI CTTGAG 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 322
BsaJI CCNNGG 2 cut(s) 283, 606
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 2 cut(s) 711, 762
Bse1I ACTGG 1 cut(s) 722
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 2 cut(s) 285, 492
BseCI ATCGAT 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 283, 606
BseGI GGATG 1 cut(s) 850
BseLI CCNNNNNNNGG 2 cut(s) 711, 762
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 261, 477
BseNI ACTGG 1 cut(s) 722
BseRI GAGGAG 2 cut(s) 82, 144
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 5 cut(s) 78, 385, 658, 670, 803
BseYI CCCAGC 1 cut(s) 565
BsgI GTGCAG 1 cut(s) 825
BshFI GGCC 5 cut(s) 122, 240, 282, 348, 466
BshVI ATCGAT 1 cut(s) 322
BsiHKAI GWGCWC 3 cut(s) 204, 261, 601
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 711, 762
BsmI GAATGC 3 cut(s) 501, 508, 733
BsnI GGCC 5 cut(s) 122, 240, 282, 348, 466
BsoBI CYCGRG 1 cut(s) 305
Bsp119I TTCGAA 1 cut(s) 769
Bsp120I GGGCCC 1 cut(s) 280
Bsp1286I GDGCHC 5 cut(s) 204, 261, 284, 306, 601
Bsp143I GATC 1 cut(s) 482
BspACI CCGC 2 cut(s) 15, 293
BspANI GGCC 5 cut(s) 122, 240, 282, 348, 466
BspCNI CTCAG 2 cut(s) 262, 478
BspDI ATCGAT 1 cut(s) 322
BspLI GGNNCC 3 cut(s) 181, 282, 694
BspT104I TTCGAA 1 cut(s) 769
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 1 cut(s) 722
BssECI CCNNGG 2 cut(s) 283, 606
BssMI GATC 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 2 cut(s) 285, 492
Bst4CI ACNGT 2 cut(s) 250, 316
BstAPI GCANNNNNTGC 1 cut(s) 617
BstBI TTCGAA 1 cut(s) 769
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 3 cut(s) 161, 270, 486
BstF5I GGATG 1 cut(s) 850
BstKTI GATC 1 cut(s) 485
BstMBI GATC 1 cut(s) 482
BstMWI GCNNNNNNNGC 4 cut(s) 395, 496, 505, 617
BstNI CCWGG 2 cut(s) 285, 492
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 283, 490
BstSLI GKGCMC 1 cut(s) 284
BstV1I GCAGC 5 cut(s) 78, 385, 658, 670, 803
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 482
BstYI RGATCY 1 cut(s) 482
Bsu15I ATCGAT 1 cut(s) 322
BsuRI GGCC 5 cut(s) 122, 240, 282, 348, 466
BsuTUI ATCGAT 1 cut(s) 322
BtsCI GGATG 1 cut(s) 850
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 280, 281
ClaI ATCGAT 1 cut(s) 322
Csp6I GTAC 2 cut(s) 437, 715
CviAII CATG 5 cut(s) 175, 193, 377, 723, 740
CviQI GTAC 2 cut(s) 437, 715
DdeI CTNAG 3 cut(s) 161, 270, 486
DpnI GATC 1 cut(s) 484
DpnII GATC 1 cut(s) 482
EaeI YGGCCR 1 cut(s) 238
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 466
Eco24I GRGCYC 3 cut(s) 204, 284, 306
Eco53kI GAGCTC 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 281
EcoRI GAATTC 1 cut(s) 418
EcoRII CCWGG 2 cut(s) 283, 490
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 3 cut(s) 204, 284, 306
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 5 cut(s) 178, 196, 380, 726, 743
FatI CATG 5 cut(s) 174, 192, 376, 722, 739
Fnu4HI GCNGC 5 cut(s) 67, 399, 647, 684, 792
FriOI GRGCYC 3 cut(s) 204, 284, 306
Fsp4HI GCNGC 5 cut(s) 67, 399, 647, 684, 792
GluI GCNGC 5 cut(s) 67, 399, 647, 684, 792
GsaI CCCAGC 1 cut(s) 569
HaeIII GGCC 5 cut(s) 122, 240, 282, 348, 466
HapII CCGG 1 cut(s) 129
Hin1II CATG 5 cut(s) 178, 196, 380, 726, 743
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 4 cut(s) 275, 308, 810, 826
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 373, 427
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 3 cut(s) 225, 271, 487
Hpy188III TCNNGA 1 cut(s) 458
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 3 cut(s) 97, 133, 483
HpyCH4III ACNGT 2 cut(s) 250, 316
HpyCH4V TGCA 8 cut(s) 66, 383, 401, 542, 620, 686, 739, 806
HpyF10VI GCNNNNNNNGC 4 cut(s) 395, 496, 505, 617
HpyF3I CTNAG 3 cut(s) 161, 270, 486
Hsp92II CATG 5 cut(s) 178, 196, 380, 726, 743
Kzo9I GATC 1 cut(s) 482
LmnI GCTCC 3 cut(s) 157, 219, 264
Lsp1109I GCAGC 5 cut(s) 78, 385, 658, 670, 803
LweI GCATC 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 633
MalI GATC 1 cut(s) 484
MboI GATC 1 cut(s) 482
MboII GAAGA 3 cut(s) 40, 495, 691
MfeI CAATTG 1 cut(s) 687
MflI RGATCY 1 cut(s) 482
MhlI GDGCHC 5 cut(s) 204, 261, 284, 306, 601
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 9 cut(s) 44, 101, 116, 208, 288, 418, 543, 588, 687
MluNI TGGCCA 1 cut(s) 240
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 2 cut(s) 55, 207
MnlI CCTC 5 cut(s) 80, 103, 165, 265, 456
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
MseI TTAA 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 533
Msp20I TGGCCA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 794
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 2 cut(s) 285, 492
MunI CAATTG 1 cut(s) 687
Mva1269I GAATGC 3 cut(s) 501, 508, 733
MvaI CCWGG 2 cut(s) 285, 492
MwoI GCNNNNNNNGC 4 cut(s) 395, 496, 505, 617
NdeII GATC 1 cut(s) 482
NlaIII CATG 5 cut(s) 178, 196, 380, 726, 743
NlaIV GGNNCC 3 cut(s) 181, 282, 694
NspI RCATGY 1 cut(s) 196
NspV TTCGAA 1 cut(s) 769
PaeI GCATGC 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 305
PceI AGGCCT 1 cut(s) 466
PctI GAATGC 3 cut(s) 501, 508, 733
PfeI GAWTC 3 cut(s) 275, 810, 826
PflMI CCANNNNNTGG 1 cut(s) 711
PkrI GCNGC 5 cut(s) 68, 400, 648, 685, 793
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 283, 490
PspFI CCCAGC 1 cut(s) 565
PspGI CCWGG 2 cut(s) 283, 490
PspN4I GGNNCC 3 cut(s) 181, 282, 694
PspOMI GGGCCC 1 cut(s) 280
PspPI GGNCC 2 cut(s) 280, 281
PspXI VCTCGAGB 1 cut(s) 305
PsuI RGATCY 1 cut(s) 482
PvuII CAGCTG 1 cut(s) 794
RsaI GTAC 2 cut(s) 438, 716
RsaNI GTAC 2 cut(s) 437, 715
RseI CAYNNNNRTG 1 cut(s) 533
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 5 cut(s) 67, 399, 647, 684, 792
Sau3AI GATC 1 cut(s) 482
Sau96I GGNCC 2 cut(s) 280, 281
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 285, 492
SduI GDGCHC 5 cut(s) 204, 261, 284, 306, 601
SetI ASST 5 cut(s) 154, 173, 204, 391, 796
SfaNI GCATC 1 cut(s) 370
Sfr274I CTCGAG 1 cut(s) 305
SfuI TTCGAA 1 cut(s) 769
SlaI CTCGAG 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 533
SmlI CTYRAG 2 cut(s) 197, 305
SmoI CTYRAG 2 cut(s) 197, 305
SphI GCATGC 1 cut(s) 196
Sse9I AATT 9 cut(s) 44, 101, 116, 208, 288, 418, 543, 588, 687
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 2 cut(s) 15, 293
SstI GAGCTC 1 cut(s) 204
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 2 cut(s) 283, 490
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 2 cut(s) 250, 316
TaqI TCGA 4 cut(s) 113, 306, 322, 769
TasI AATT 9 cut(s) 44, 101, 116, 208, 288, 418, 543, 588, 687
TatI WGTACW 1 cut(s) 436
TfiI GAWTC 3 cut(s) 275, 810, 826
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 1 cut(s) 319
TseI GCWGC 5 cut(s) 66, 398, 646, 683, 791
TspDTI ATGAA 4 cut(s) 163, 540, 644, 756
TspRI CASTG 1 cut(s) 319
Van91I CCANNNNNTGG 1 cut(s) 711
XapI RAATTY 3 cut(s) 101, 208, 418
XceI RCATGY 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XhoI CTCGAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.