Rh6DG482200

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000218
Physical Location & Seq
Reverse (-)
64592402 .. 64592679
278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG482200.1

Sequence Viewer

Length: 231 bp
ATGTGGTTGCCATTTGGGACAGGAAGGAGAGGCTGTCCTGGTGAAGGCTTAGCAAACCGGATTGTAGGGCTGGCCTTAGGGTCACTGATTCAGTGCTTTGAGTGGGAGAGACCTAGTGAGGAAATGATTGATATGAGTATAGGTACTGGGCTCACCATGCCTAAAGCTCAACCGTTACTAGCAAAATGCAGGCCACGCCCAATAATGCTGGCCTTACTTTCTCAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

76

Amino Acids

8.33

Weight (kDa)

8.65

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 56 2.2e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 44
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 103
AoxI GGCC 3 cut(s) 72, 191, 210
AsuHPI GGTGA 2 cut(s) 53, 145
AxyI CCTNAGG 1 cut(s) 76
BanII GRGCYC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 2 cut(s) 114, 179
BlpI GCTNAGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 39
BmrI ACTGGG 1 cut(s) 156
BmuI ACTGGG 1 cut(s) 156
Bpu1102I GCTNAGC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 151
Bse21I CCTNAGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 151
BshFI GGCC 3 cut(s) 74, 193, 212
BsiSI CCGG 1 cut(s) 58
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 3 cut(s) 74, 193, 212
Bso31I GGTCTC 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 153
Bsp1720I GCTNAGC 1 cut(s) 49
BspANI GGCC 3 cut(s) 74, 193, 212
BspTNI GGTCTC 1 cut(s) 103
BsrI ACTGG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 72, 191, 210
BstDEI CTNAG 2 cut(s) 49, 76
BstENI CCTNNNNNAGG 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 157, 195
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
Bsu36I CCTNAGG 1 cut(s) 76
BsuRI GGCC 3 cut(s) 74, 193, 212
BtsIMutI CAGTG 2 cut(s) 83, 98
Cac8I GCNNGC 3 cut(s) 72, 191, 210
Csp6I GTAC 1 cut(s) 144
CviAII CATG 1 cut(s) 157
CviJI RGCY 8 cut(s) 33, 48, 70, 74, 151, 167, 193, 212
CviKI_1 RGCY 8 cut(s) 33, 48, 70, 74, 151, 167, 193, 212
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 2 cut(s) 49, 76
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 103
Eco81I CCTNAGG 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 1 cut(s) 160
FaiI YATR 3 cut(s) 134, 140, 158
FaqI GGGAC 1 cut(s) 31
FatI CATG 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 153
FspBI CTAG 2 cut(s) 114, 179
HaeIII GGCC 3 cut(s) 74, 193, 212
HapII CCGG 1 cut(s) 58
Hin1II CATG 1 cut(s) 160
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 58
HphI GGTGA 2 cut(s) 53, 145
HpyAV CCTTC 2 cut(s) 18, 38
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 195
HpyF3I CTNAG 2 cut(s) 49, 76
Hsp92II CATG 1 cut(s) 160
LpnPI CCDG 8 cut(s) 6, 24, 51, 56, 71, 132, 175, 194
MaeI CTAG 2 cut(s) 114, 179
MaeIII GTNAC 2 cut(s) 81, 174
MhlI GDGCHC 1 cut(s) 153
MnlI CCTC 2 cut(s) 23, 112
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 157, 195
NlaIII CATG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 153
SetI ASST 3 cut(s) 115, 145, 169
SspMI CTAG 2 cut(s) 114, 179
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 174
TfiI GAWTC 1 cut(s) 88
TscAI CASTG 2 cut(s) 90, 98
TseFI GTSAC 1 cut(s) 81
Tsp45I GTSAC 1 cut(s) 81
TspRI CASTG 2 cut(s) 90, 98
XagI CCTNNNNNAGG 1 cut(s) 42
XspI CTAG 2 cut(s) 114, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.