Rmu_co8333451.1_g000001

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8333451.1
OG0000218
Physical Location & Seq
Forward (+)
1 .. 290
290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8333451.1_g000001.1.cds

Sequence Viewer

Length: 290 bp
agcctgaacaatttaagccagagaggttccaaaatgcacaagaagaaagagatgttttcaagtacttgccatttgggacaggaagaagaggctgtcctggggaagggttagccaaccggatggtagggctggccttagggtcagtcattcagtgttttgagtgggagagaagtggtgaggagatggtggacatgactgaagggactggcatctcaatgcctagagctcaccctttgctagcaaaatgcaggccacgcccaacgatgctggccttactttctcaactctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

95

Amino Acids

10.67

Weight (kDa)

7.1

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 1 cut(s) 60
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw21I GWGCWC 1 cut(s) 228
AoxI GGCC 3 cut(s) 131, 250, 269
AsuHPI GGTGA 2 cut(s) 187, 220
AsuNHI GCTAGC 1 cut(s) 237
AxyI CCTNAGG 1 cut(s) 135
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 228
BccI CCATC 2 cut(s) 114, 177
BciT130I CCWGG 1 cut(s) 98
BfaI CTAG 2 cut(s) 221, 238
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 2 cut(s) 218, 254
BmtI GCTAGC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 210
Bse21I CCTNAGG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 193
BshFI GGCC 3 cut(s) 133, 252, 271
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 2 cut(s) 90, 216
BslI CCNNNNNNNGG 1 cut(s) 103
BsmFI GGGAC 2 cut(s) 90, 216
BsnI GGCC 3 cut(s) 133, 252, 271
Bsp1286I GDGCHC 1 cut(s) 228
BspANI GGCC 3 cut(s) 133, 252, 271
BspLI GGNNCC 1 cut(s) 28
BspOI GCTAGC 1 cut(s) 241
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 4 cut(s) 131, 239, 250, 269
BstDEI CTNAG 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 125
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 135
BsuRI GGCC 3 cut(s) 133, 252, 271
BtsCI GGATG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 4 cut(s) 131, 239, 250, 269
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 192
CviJI RGCY 9 cut(s) 3, 18, 92, 112, 129, 133, 226, 252, 271
CviKI_1 RGCY 9 cut(s) 3, 18, 92, 112, 129, 133, 226, 252, 271
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 218
Eco81I CCTNAGG 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 1 cut(s) 195
FaiI YATR 1 cut(s) 193
FaqI GGGAC 2 cut(s) 90, 216
FatI CATG 1 cut(s) 191
FokI GGATG 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 228
FspBI CTAG 2 cut(s) 221, 238
HaeIII GGCC 3 cut(s) 133, 252, 271
HapII CCGG 1 cut(s) 117
Hin1II CATG 1 cut(s) 195
HpaII CCGG 1 cut(s) 117
HphI GGTGA 2 cut(s) 187, 220
Hpy166II GTNNAC 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 2 cut(s) 97, 193
HpyCH4V TGCA 2 cut(s) 37, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 1 cut(s) 195
LweI GCATC 2 cut(s) 218, 254
MaeI CTAG 2 cut(s) 221, 238
MboII GAAGA 3 cut(s) 55, 95, 98
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 10
MnlI CCTC 3 cut(s) 17, 82, 171
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 214
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 254
NheI GCTAGC 1 cut(s) 237
NlaIII CATG 1 cut(s) 195
NlaIV GGNNCC 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 28
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 214
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 14
ScaI AGTACT 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 228
SetI ASST 2 cut(s) 28, 228
SfaNI GCATC 2 cut(s) 218, 254
SmiMI CAYNNNNRTG 1 cut(s) 214
Sse9I AATT 1 cut(s) 10
SspMI CTAG 2 cut(s) 221, 238
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 96
TasI AATT 1 cut(s) 10
TatI WGTACW 1 cut(s) 62
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 157
TspRI CASTG 1 cut(s) 157
XagI CCTNNNNNAGG 1 cut(s) 101
XspI CTAG 2 cut(s) 221, 238
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.