Rorug02G0238500

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
24154099 .. 24156964
2866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0238500.1

Sequence Viewer

Length: 690 bp
ATGGGTAGGCCAAGGAGTCTTCGCAGCAAAGCGGCCCACTTTGTAACTGATATCACTACTGGATTGCTCAACCCCATTTCTGACAAACCCTCCAAACCCTCTCCCATCTCCTCTTCCTACGTCTCCGAACCTTCTTTACTTCTTACTGAGAAAAATAGAATTGCTCTTTACAGTTCACTCCCAGCGCTAGTTCAGGGCAGACAATGGTTGTTACGATATAGTACATGGAGGCATGGCATATCACTTTCAACCCTATACAGAAGAAGTATGCTTTGGCCTGGCCTGAGTTTGCTGGTTGTTGGAGACCGTAAAGGTGCAGTTTTTGGTGGCTTGGTGGAGGCACCTCTAAGACCAACCAACAAGAAGTATCAGGGAACAAATGATACATTTGTTTTCACAAATGCACCTGACCATCCAGTTATATATCGCCCTACAGGTGCCAACCGCTATTTCACATTGTGTGCTACTGACTTTTTAGCTATTGGTGGGGGTGGTCATTTTGCACTCTATTTGAACAGTGATCTATTGAGTGGATCAAGTTCAGTTTCAGAAACCTATGGGAATCCATGTCTTGCAAACTCAGAAGACTTTGATGTGAAAGAAGTAGAGTTATGGGGTTTTGTTTATGCTACTAAGTATGAGGAAGTACTTGCTCAAAGCCGTATGGAGGCACCTGGGATTTGCCGATGA

Protein Analysis

229

Amino Acids

25.26

Weight (kDa)

9.11

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 42 - 207 3e-40 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 340, 437, 670
AciI CCGC 2 cut(s) 32, 445
AclWI GGATC 1 cut(s) 541
AdeI CACNNNGTG 1 cut(s) 459
AfaI GTAC 2 cut(s) 223, 648
AfeI AGCGCT 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 667
AgsI TTSAA 2 cut(s) 249, 514
AjnI CCWGG 2 cut(s) 277, 673
AjuI GAANNNNNNNTTGG 4 cut(s) 256, 288, 434, 466
AluBI AGCT 1 cut(s) 479
AluI AGCT 1 cut(s) 479
Alw26I GTCTC 2 cut(s) 127, 297
AlwI GGATC 1 cut(s) 541
Aor51HI AGCGCT 1 cut(s) 186
AoxI GGCC 4 cut(s) 8, 33, 275, 280
ApeKI GCWGC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 34
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BanI GGYRCC 3 cut(s) 340, 437, 670
BbsI GAAGAC 2 cut(s) 11, 591
BbvI GCAGC 1 cut(s) 36
BccI CCATC 2 cut(s) 113, 420
BceAI ACGGC 1 cut(s) 645
BciT130I CCWGG 2 cut(s) 279, 675
BcoDI GTCTC 2 cut(s) 127, 297
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 188
BisI GCNGC 2 cut(s) 25, 33
BlsI GCNGC 2 cut(s) 26, 34
BmcAI AGTACT 1 cut(s) 648
Bme1390I CCNGG 2 cut(s) 279, 675
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 3 cut(s) 342, 439, 672
BmrFI CCNGG 2 cut(s) 279, 675
BpiI GAAGAC 2 cut(s) 11, 591
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 11, 674
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 667
Bse1I ACTGG 2 cut(s) 64, 416
BseBI CCWGG 2 cut(s) 279, 675
BseDI CCNNGG 2 cut(s) 11, 674
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 667
BseMII CTCAG 3 cut(s) 138, 275, 594
BseNI ACTGG 2 cut(s) 64, 416
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 36
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 4 cut(s) 10, 35, 277, 282
BshNI GGYRCC 3 cut(s) 340, 437, 670
BslI CCNNNNNNNGG 1 cut(s) 667
BsmAI GTCTC 2 cut(s) 127, 297
BsmBI CGTCTC 1 cut(s) 127
BsnI GGCC 4 cut(s) 10, 35, 277, 282
Bso31I GGTCTC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 520, 533
BspACI CCGC 2 cut(s) 32, 445
BspANI GGCC 4 cut(s) 10, 35, 277, 282
BspCNI CTCAG 3 cut(s) 139, 276, 593
BspLI GGNNCC 3 cut(s) 342, 439, 672
BspPI GGATC 1 cut(s) 541
BspT107I GGYRCC 3 cut(s) 340, 437, 670
BspTNI GGTCTC 1 cut(s) 297
BsrI ACTGG 2 cut(s) 64, 416
BssECI CCNNGG 2 cut(s) 11, 674
BssMI GATC 2 cut(s) 520, 533
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 279, 675
Bst4CI ACNGT 3 cut(s) 173, 308, 518
Bst6I CTCTTC 1 cut(s) 118
BstDEI CTNAG 5 cut(s) 147, 284, 347, 580, 633
BstF5I GGATG 1 cut(s) 412
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 2 cut(s) 523, 536
BstMAI GTCTC 2 cut(s) 127, 297
BstMBI GATC 2 cut(s) 520, 533
BstNI CCWGG 2 cut(s) 279, 675
BstSCI CCNGG 2 cut(s) 277, 673
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 2 cut(s) 11, 591
BsuRI GGCC 4 cut(s) 10, 35, 277, 282
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 523
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 222, 647
CviAII CATG 3 cut(s) 225, 233, 567
CviJI RGCY 7 cut(s) 10, 35, 277, 282, 330, 479, 660
CviKI_1 RGCY 7 cut(s) 10, 35, 277, 282, 330, 479, 660
CviQI GTAC 2 cut(s) 222, 647
DdeI CTNAG 5 cut(s) 147, 284, 347, 580, 633
DpnI GATC 2 cut(s) 522, 535
DpnII GATC 2 cut(s) 520, 533
DraIII CACNNNGTG 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 297
Eco32I GATATC 1 cut(s) 52
Eco47III AGCGCT 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 277, 673
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 3 cut(s) 228, 236, 570
FatI CATG 3 cut(s) 224, 232, 566
Fnu4HI GCNGC 2 cut(s) 25, 33
FokI GGATG 1 cut(s) 399
Fsp4HI GCNGC 2 cut(s) 25, 33
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 186
GluI GCNGC 2 cut(s) 25, 33
GsaI CCCAGC 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 4 cut(s) 10, 35, 277, 282
HhaI GCGC 1 cut(s) 187
Hin1II CATG 3 cut(s) 228, 236, 570
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 2 cut(s) 16, 562
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 4 cut(s) 82, 127, 550, 583
Hpy8I GTNNAC 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 141
HpyCH4III ACNGT 3 cut(s) 173, 308, 518
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 4 cut(s) 317, 404, 503, 575
HpyF3I CTNAG 5 cut(s) 147, 284, 347, 580, 633
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 3 cut(s) 228, 236, 570
HspAI GCGC 1 cut(s) 185
Kzo9I GATC 2 cut(s) 520, 533
Lsp1109I GCAGC 1 cut(s) 36
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 43, 210
MalI GATC 2 cut(s) 522, 535
MboI GATC 2 cut(s) 520, 533
MboII GAAGA 4 cut(s) 11, 105, 273, 596
MluCI AATT 1 cut(s) 159
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 8 cut(s) 100, 109, 121, 222, 331, 354, 634, 661
MspR9I CCNGG 2 cut(s) 279, 675
MvaI CCWGG 2 cut(s) 279, 675
NdeII GATC 2 cut(s) 520, 533
NlaIII CATG 3 cut(s) 228, 236, 570
NlaIV GGNNCC 3 cut(s) 342, 439, 672
PfeI GAWTC 1 cut(s) 562
PkrI GCNGC 2 cut(s) 26, 34
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 277, 673
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 2 cut(s) 277, 673
PspN4I GGNNCC 3 cut(s) 342, 439, 672
PspPI GGNCC 1 cut(s) 34
PsrI GAACNNNNNNTAC 4 cut(s) 120, 152, 367, 399
RsaI GTAC 2 cut(s) 223, 648
RsaNI GTAC 2 cut(s) 222, 647
SatI GCNGC 2 cut(s) 25, 33
Sau3AI GATC 2 cut(s) 520, 533
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 648
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 279, 675
SetI ASST 9 cut(s) 123, 133, 316, 346, 409, 439, 481, 557, 676
SfcI CTRYAG 1 cut(s) 432
Sse9I AATT 1 cut(s) 159
SsiI CCGC 2 cut(s) 32, 445
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 277, 673
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 3 cut(s) 173, 308, 518
TaiI ACGT 1 cut(s) 123
TasI AATT 1 cut(s) 159
TatI WGTACW 2 cut(s) 221, 646
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 562
TscAI CASTG 1 cut(s) 523
TseI GCWGC 1 cut(s) 24
TspRI CASTG 1 cut(s) 523
XspI CTAG 1 cut(s) 188
ZrmI AGTACT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.