Rorug02G0139000

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000218
Physical Location & Seq
Reverse (-)
12227005 .. 12228506
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0139000.1

Sequence Viewer

Length: 1101 bp
ATGGAGACGGCCAAGAGTGTTCTAGGAGTTGACTTTGGTCAACCTATTTTGCAGGCTGGCATTGCCTGGCATGTGGGAGATGGCACAAGCATTAGAGTATGGCAAGATAAGTGGATCCCTCATTGTCCACAGTATCTCATCCAGAAGCCTCCAAATTGCAATGTGGAATTTGTTTCGGACCTTATAGATGCCAACACTAGAATGTGGAAGGAAGCCTTGATGAGACAGATATTTCCTGCAGATATTGTCAACAAAGTGTTATGTATACCATTGGCCAGAAGACATGTAACTGATCGAGTATATTGGATGCCGGAAAAACGGGGTTTTTACTCGGTGAAGTCGGCATATTGGATAGCTCGAGACAAAGTTCTAAGCCGGGTGCTCACATCTACATCCCAAGGAGACCCTTTCAAGCCTCTGTGGAAGCGTTTGTGGCAGGCCAAAATACCGGGAAAAGTTCAGATCTATTTGTGGAGGGCATGCAATGACCTCTTGCCAACAAAAGCTGCTTTAACAAAGAAAGGCTTTCAAGGTGATTTGCGGTGTCTGCTGTGCCCTGCGGCTTTTGAAGACAGAGAGCATGTACTCTGCAGGTTCCCTACTGCACAAGCTATACTAGCAGCTCCTCCATTGAGTTTAGAGAACACCATCCTTCCTAACATGAATTTCAAGGAGTGGTGTCTGGACCAAGCCATCAACCTACAACAGGATAAGTTTGAGAAACTGCTCATGGTATTGTGGTCCATCTGGAAGAATAGGAACACAAAATTTTGGCATGGCACAACTCAAACTGCAACTGACATTGTGTTCAGTGCTTTATCATGGTTGGAAGAGTTTAGAGCTGCCAATCGAACCACACAGCAGCAAGGTACGAACCAGAAAAGGAAGTGGAAGCCAGATGAGAATGGAAATTGGAAATTAAATGTGGATGGAAGTTTTCTTCCAAATCACACCAGAGGTGGTCTTGGTGGAGTGTTGCGTGATGGGCAAGGCCATTTCAAGGCAGCTTTTGCACTACCAGTGTGCAATGTTGCGTCAGCTAAACATGTTGAGCTGTTAGGCTGCAGCTGCTTCAGTCCTTCCCTAATCAAGAAGTCATAA

Protein Analysis

366

Amino Acids

41.72

Weight (kDa)

9.48

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 110 - 203 2.9e-13 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 582
AccI GTMKAC 1 cut(s) 265
AciI CCGC 2 cut(s) 541, 560
AclWI GGATC 2 cut(s) 109, 122
AcoI YGGCCR 2 cut(s) 9, 273
AcsI RAATTY 3 cut(s) 167, 664, 767
AcuI CTGAAG 1 cut(s) 1057
AfaI GTAC 2 cut(s) 585, 871
AfiI CCNNNNNNNGG 2 cut(s) 706, 1000
AflIII ACRYGT 2 cut(s) 283, 1045
AgsI TTSAA 5 cut(s) 412, 530, 569, 670, 1000
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 9 cut(s) 356, 506, 611, 623, 842, 1007, 1040, 1054, 1068
AluI AGCT 9 cut(s) 356, 506, 611, 623, 842, 1007, 1040, 1054, 1068
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 3 cut(s) 217, 354, 396
AlwI GGATC 2 cut(s) 109, 122
Ama87I CYCGRG 1 cut(s) 357
AoxI GGCC 4 cut(s) 9, 273, 438, 991
ApeKI GCWGC 8 cut(s) 506, 620, 842, 862, 1004, 1062, 1065, 1068
ApoI RAATTY 3 cut(s) 167, 664, 767
AspS9I GGNCC 3 cut(s) 178, 685, 741
AsuC2I CCSGG 2 cut(s) 377, 450
AsuHPI GGTGA 2 cut(s) 346, 545
AvaI CYCGRG 1 cut(s) 357
AvaII GGWCC 3 cut(s) 178, 685, 741
BaeGI GKGCMC 1 cut(s) 557
BalI TGGCCA 1 cut(s) 275
BamHI GGATCC 1 cut(s) 114
BbsI GAAGAC 2 cut(s) 286, 576
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 8 cut(s) 493, 632, 829, 874, 1016, 1049, 1055, 1077
BccI CCATC 6 cut(s) 74, 656, 701, 752, 923, 977
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 67
BcnI CCSGG 2 cut(s) 377, 450
BcoDI GTCTC 3 cut(s) 217, 354, 396
BfaI CTAG 3 cut(s) 23, 198, 617
BfmI CTRYAG 3 cut(s) 237, 589, 1063
BfuAI ACCTGC 1 cut(s) 582
BglII AGATCT 1 cut(s) 462
BisI GCNGC 9 cut(s) 507, 561, 621, 843, 863, 1005, 1063, 1066, 1069
BlsI GCNGC 9 cut(s) 508, 562, 622, 844, 864, 1006, 1064, 1067, 1070
Bme1390I CCNGG 3 cut(s) 67, 377, 450
Bme18I GGWCC 3 cut(s) 178, 685, 741
BmeT110I CYCGRG 1 cut(s) 357
BmgT120I GGNCC 3 cut(s) 178, 685, 741
BmiI GGNNCC 2 cut(s) 116, 596
BmrFI CCNGG 3 cut(s) 67, 377, 450
BmsI GCATC 2 cut(s) 178, 297
BoxI GACNNNNGTC 1 cut(s) 36
BpiI GAAGAC 2 cut(s) 286, 576
BpuMI CCSGG 2 cut(s) 377, 450
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 397
Bsc4I CCNNNNNNNGG 2 cut(s) 706, 1000
Bse1I ACTGG 1 cut(s) 1019
Bse3DI GCAATG 4 cut(s) 60, 166, 490, 1033
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 5 cut(s) 138, 312, 392, 648, 934
BseLI CCNNNNNNNGG 2 cut(s) 706, 1000
BseMI GCAATG 4 cut(s) 60, 166, 490, 1033
BseNI ACTGG 1 cut(s) 1019
BseRI GAGGAG 1 cut(s) 615
BseSI GKGCMC 1 cut(s) 557
BseXI GCAGC 8 cut(s) 493, 632, 829, 874, 1016, 1049, 1055, 1077
BsgI GTGCAG 1 cut(s) 588
BshFI GGCC 4 cut(s) 11, 275, 440, 993
BsiHKAI GWGCWC 1 cut(s) 384
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 3 cut(s) 311, 376, 449
BslI CCNNNNNNNGG 2 cut(s) 706, 1000
BsmAI GTCTC 3 cut(s) 217, 354, 396
BsnI GGCC 4 cut(s) 11, 275, 440, 993
Bso31I GGTCTC 1 cut(s) 396
BsoBI CYCGRG 1 cut(s) 357
Bsp1286I GDGCHC 2 cut(s) 384, 557
Bsp143I GATC 3 cut(s) 114, 292, 462
BspACI CCGC 2 cut(s) 541, 560
BspANI GGCC 4 cut(s) 11, 275, 440, 993
BspLI GGNNCC 2 cut(s) 116, 596
BspMAI CTGCAG 3 cut(s) 241, 593, 1067
BspMI ACCTGC 1 cut(s) 582
BspPI GGATC 2 cut(s) 109, 122
BspTNI GGTCTC 1 cut(s) 396
BsrDI GCAATG 4 cut(s) 60, 166, 490, 1033
BsrI ACTGG 1 cut(s) 1019
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 3 cut(s) 114, 292, 462
BssNAI GTATAC 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 397
Bst1107I GTATAC 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 825
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstC8I GCNNGC 4 cut(s) 54, 58, 438, 481
BstDEI CTNAG 1 cut(s) 371
BstENI CCTNNNNNAGG 1 cut(s) 704
BstF5I GGATG 5 cut(s) 138, 312, 392, 648, 934
BstKTI GATC 3 cut(s) 117, 295, 465
BstMAI GTCTC 3 cut(s) 217, 354, 396
BstMBI GATC 3 cut(s) 114, 292, 462
BstMWI GCNNNNNNNGC 7 cut(s) 62, 433, 547, 617, 985, 1010, 1068
BstNI CCWGG 1 cut(s) 67
BstNSI RCATGY 5 cut(s) 74, 287, 483, 584, 1049
BstPAI GACNNNNGTC 1 cut(s) 36
BstSCI CCNGG 3 cut(s) 65, 375, 448
BstSFI CTRYAG 3 cut(s) 237, 589, 1063
BstSLI GKGCMC 1 cut(s) 557
BstV1I GCAGC 8 cut(s) 493, 632, 829, 874, 1016, 1049, 1055, 1077
BstV2I GAAGAC 2 cut(s) 286, 576
BstX2I RGATCY 2 cut(s) 114, 462
BstYI RGATCY 2 cut(s) 114, 462
BstZ17I GTATAC 1 cut(s) 266
BsuRI GGCC 4 cut(s) 11, 275, 440, 993
BtsCI GGATG 5 cut(s) 138, 312, 392, 648, 934
BtsIMutI CAGTG 2 cut(s) 817, 1026
BveI ACCTGC 1 cut(s) 582
Cac8I GCNNGC 4 cut(s) 54, 58, 438, 481
Cfr13I GGNCC 3 cut(s) 178, 685, 741
CseI GACGC 1 cut(s) 1023
Csp6I GTAC 2 cut(s) 584, 870
CspCI CAANNNNNGTGG 2 cut(s) 92, 127
CviAII CATG 9 cut(s) 71, 284, 480, 581, 661, 730, 776, 822, 1046
CviQI GTAC 2 cut(s) 584, 870
DdeI CTNAG 1 cut(s) 371
DpnI GATC 3 cut(s) 116, 294, 464
DpnII GATC 3 cut(s) 114, 292, 462
EaeI YGGCCR 2 cut(s) 9, 273
Eam1104I CTCTTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 825
Eco130I CCWWGG 1 cut(s) 397
Eco31I GGTCTC 1 cut(s) 396
Eco47I GGWCC 3 cut(s) 178, 685, 741
Eco57I CTGAAG 1 cut(s) 1057
Eco88I CYCGRG 1 cut(s) 357
EcoNI CCTNNNNNAGG 1 cut(s) 704
EcoRII CCWGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 9 cut(s) 74, 287, 483, 584, 664, 733, 779, 825, 1049
FalI AAGNNNNNCTT 4 cut(s) 200, 232, 509, 541
FatI CATG 9 cut(s) 70, 283, 479, 580, 660, 729, 775, 821, 1045
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 9 cut(s) 507, 561, 621, 843, 863, 1005, 1063, 1066, 1069
FokI GGATG 5 cut(s) 125, 319, 379, 635, 941
Fsp4HI GCNGC 9 cut(s) 507, 561, 621, 843, 863, 1005, 1063, 1066, 1069
FspBI CTAG 3 cut(s) 23, 198, 617
GluI GCNGC 9 cut(s) 507, 561, 621, 843, 863, 1005, 1063, 1066, 1069
HaeIII GGCC 4 cut(s) 11, 275, 440, 993
HapII CCGG 3 cut(s) 311, 376, 449
HgaI GACGC 1 cut(s) 1023
Hin1II CATG 9 cut(s) 74, 287, 483, 584, 664, 733, 779, 825, 1049
HincII GTYRAC 3 cut(s) 31, 41, 250
HindII GTYRAC 3 cut(s) 31, 41, 250
HpaII CCGG 3 cut(s) 311, 376, 449
HphI GGTGA 2 cut(s) 346, 545
Hpy166II GTNNAC 5 cut(s) 31, 41, 128, 250, 266
Hpy188I TCNGA 2 cut(s) 178, 462
Hpy188III TCNNGA 5 cut(s) 142, 359, 683, 748, 1090
Hpy8I GTNNAC 5 cut(s) 31, 41, 128, 250, 266
HpyAV CCTTC 3 cut(s) 202, 662, 1089
HpyCH4III ACNGT 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 433, 547, 617, 985, 1010, 1068
HpyF3I CTNAG 1 cut(s) 371
Hsp92II CATG 9 cut(s) 74, 287, 483, 584, 664, 733, 779, 825, 1049
Kzo9I GATC 3 cut(s) 114, 292, 462
LmnI GCTCC 1 cut(s) 628
Lsp1109I GCAGC 8 cut(s) 493, 632, 829, 874, 1016, 1049, 1055, 1077
LweI GCATC 2 cut(s) 178, 297
MaeI CTAG 3 cut(s) 23, 198, 617
MaeIII GTNAC 1 cut(s) 286
MalI GATC 3 cut(s) 116, 294, 464
MboI GATC 3 cut(s) 114, 292, 462
MboII GAAGA 5 cut(s) 291, 581, 763, 842, 932
MflI RGATCY 2 cut(s) 114, 462
MhlI GDGCHC 2 cut(s) 384, 557
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 6 cut(s) 154, 167, 664, 767, 910, 917
MluNI TGGCCA 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 807
MnlI CCTC 7 cut(s) 129, 159, 426, 468, 500, 636, 950
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 2 cut(s) 512, 920
MslI CAYNNNNRTG 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 1068
MspI CCGG 3 cut(s) 311, 376, 449
MspR9I CCNGG 3 cut(s) 67, 377, 450
MvaI CCWGG 1 cut(s) 67
MwoI GCNNNNNNNGC 7 cut(s) 62, 433, 547, 617, 985, 1010, 1068
NciI CCSGG 2 cut(s) 377, 450
NdeII GATC 3 cut(s) 114, 292, 462
NlaIII CATG 9 cut(s) 74, 287, 483, 584, 664, 733, 779, 825, 1049
NlaIV GGNNCC 2 cut(s) 116, 596
NspI RCATGY 5 cut(s) 74, 287, 483, 584, 1049
PaeI GCATGC 1 cut(s) 483
PaeR7I CTCGAG 1 cut(s) 357
PciI ACATGT 2 cut(s) 283, 1045
PkrI GCNGC 9 cut(s) 508, 562, 622, 844, 864, 1006, 1064, 1067, 1070
PscI ACATGT 2 cut(s) 283, 1045
PshAI GACNNNNGTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 65
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 116, 596
PspPI GGNCC 3 cut(s) 178, 685, 741
PstI CTGCAG 3 cut(s) 241, 593, 1067
PsuI RGATCY 2 cut(s) 114, 462
PvuII CAGCTG 1 cut(s) 1068
RsaI GTAC 2 cut(s) 585, 871
RsaNI GTAC 2 cut(s) 584, 870
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 2 cut(s) 512, 920
SatI GCNGC 9 cut(s) 507, 561, 621, 843, 863, 1005, 1063, 1066, 1069
Sau3AI GATC 3 cut(s) 114, 292, 462
Sau96I GGNCC 3 cut(s) 178, 685, 741
ScrFI CCNGG 3 cut(s) 67, 377, 450
SduI GDGCHC 2 cut(s) 384, 557
SfaNI GCATC 2 cut(s) 178, 297
SfcI CTRYAG 3 cut(s) 237, 589, 1063
Sfr274I CTCGAG 1 cut(s) 357
SinI GGWCC 3 cut(s) 178, 685, 741
SlaI CTCGAG 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
SphI GCATGC 1 cut(s) 483
Sse9I AATT 6 cut(s) 154, 167, 664, 767, 910, 917
SsiI CCGC 2 cut(s) 541, 560
SspMI CTAG 3 cut(s) 23, 198, 617
StyD4I CCNGG 3 cut(s) 65, 375, 448
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 132
TaqI TCGA 3 cut(s) 295, 358, 850
TasI AATT 6 cut(s) 154, 167, 664, 767, 910, 917
TatI WGTACW 1 cut(s) 583
TauI GCSGC 1 cut(s) 563
Tru1I TTAA 2 cut(s) 512, 920
Tru9I TTAA 2 cut(s) 512, 920
TscAI CASTG 2 cut(s) 817, 1026
TseI GCWGC 8 cut(s) 506, 620, 842, 862, 1004, 1062, 1065, 1068
TspDTI ATGAA 1 cut(s) 677
TspRI CASTG 2 cut(s) 817, 1026
VpaK11BI GGWCC 3 cut(s) 178, 685, 741
XagI CCTNNNNNAGG 1 cut(s) 704
XapI RAATTY 3 cut(s) 167, 664, 767
XceI RCATGY 5 cut(s) 74, 287, 483, 584, 1049
XhoI CTCGAG 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 265
XspI CTAG 3 cut(s) 23, 198, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.