RLG00000018539

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
31512106 .. 31512996
891 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018539

Sequence Viewer

Length: 429 bp
ATGTCGCCGAGTCCAGTTCACGGACTCTTCGGTGATCGTGCGCCGGCGGAACTAGTTGTGGAACCCCATCGACCTCAACGAGTACAAAGTCTACAAGACCGAAGTCTATTATTGGCGGGCACTGAAACATTAGCAGTGACATTAGAATGGGCTATGTCTAATATGCTAAACTATCCGGATGTATTAGAGAAGGCTAGAGCTGAACTAGATGCTCAACTTGGTCAAGAACGCTTAGTAGACGAACCAGACATCTCCAAGCTTCACTACCTACAAAGTATTATCTCTGAAACTCTTCGATTGTACCCGGCATCACCAATGCTATTACCGCATTTTGCATCAAATGATTGCATTATAGGTGGATTTAATATACCACGTCACACATTGGTATTGATCAATGCATGGGCCATACATAGAGACCCGAAGTTATAG

Protein Analysis

143

Amino Acids

15.91

Weight (kDa)

5.6

Isoelectric Point (pI)

58.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 36 - 141 2.6e-35 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 91, 237
AccIII TCCGGA 1 cut(s) 175
AciI CCGC 3 cut(s) 47, 116, 326
AfaI GTAC 2 cut(s) 84, 302
AfiI CCNNNNNNNGG 1 cut(s) 20
AhlI ACTAGT 1 cut(s) 52
AjiI CACGTC 1 cut(s) 374
AluBI AGCT 2 cut(s) 200, 259
AluI AGCT 2 cut(s) 200, 259
Alw26I GTCTC 1 cut(s) 408
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 1 cut(s) 402
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 402
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 44, 303
BaeGI GKGCMC 1 cut(s) 122
BccI CCATC 1 cut(s) 75
BclI TGATCA 1 cut(s) 390
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 408
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 3 cut(s) 53, 195, 206
Bme1390I CCNGG 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 3 cut(s) 199, 317, 344
BoxI GACNNNNGTC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 408
BsaWI WCCGGW 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 14
BseAI TCCGGA 1 cut(s) 175
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 14
BseSI GKGCMC 1 cut(s) 122
BshFI GGCC 1 cut(s) 404
BsiSI CCGG 3 cut(s) 44, 176, 305
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 408
BsnI GGCC 1 cut(s) 404
Bso31I GGTCTC 1 cut(s) 408
Bsp1286I GDGCHC 1 cut(s) 122
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 2 cut(s) 34, 390
BspACI CCGC 3 cut(s) 47, 116, 326
BspANI GGCC 1 cut(s) 404
BspEI TCCGGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 43
BssMI GATC 2 cut(s) 34, 390
Bst6I CTCTTC 2 cut(s) 32, 297
BstC8I GCNNGC 2 cut(s) 45, 118
BstDEI CTNAG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 184
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 2 cut(s) 37, 393
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 2 cut(s) 34, 390
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstPAI GACNNNNGTC 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 303
BstSLI GKGCMC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 404
BtrI CACGTC 1 cut(s) 374
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 120, 141
Cac8I GCNNGC 2 cut(s) 45, 118
CfoI GCGC 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 402
Csp6I GTAC 2 cut(s) 83, 301
CviAII CATG 1 cut(s) 399
CviJI RGCY 5 cut(s) 152, 194, 200, 259, 404
CviKI_1 RGCY 5 cut(s) 152, 194, 200, 259, 404
CviQI GTAC 2 cut(s) 83, 301
DdeI CTNAG 1 cut(s) 232
DpnI GATC 2 cut(s) 36, 392
DpnII GATC 2 cut(s) 34, 390
Eam1104I CTCTTC 2 cut(s) 32, 297
EarI CTCTTC 2 cut(s) 32, 297
EciI GGCGGA 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 400
FaeI CATG 1 cut(s) 402
FaiI YATR 8 cut(s) 155, 164, 353, 368, 400, 407, 411, 427
FatI CATG 1 cut(s) 398
FauI CCCGC 1 cut(s) 109
FbaI TGATCA 1 cut(s) 390
FblI GTMKAC 2 cut(s) 91, 237
FokI GGATG 1 cut(s) 191
FspBI CTAG 3 cut(s) 53, 195, 206
GlaI GCGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 404
HapII CCGG 3 cut(s) 44, 176, 305
HhaI GCGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 402
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 2 cut(s) 10, 24
HpaII CCGG 3 cut(s) 44, 176, 305
HphI GGTGA 2 cut(s) 44, 303
Hpy166II GTNNAC 3 cut(s) 19, 92, 238
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 176, 224
Hpy8I GTNNAC 3 cut(s) 19, 92, 238
HpyAV CCTTC 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 3 cut(s) 335, 348, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 1 cut(s) 402
HspAI GCGC 1 cut(s) 41
Kpn2I TCCGGA 1 cut(s) 175
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 2 cut(s) 34, 390
LpnPI CCDG 5 cut(s) 27, 57, 189, 258, 318
LweI GCATC 3 cut(s) 199, 317, 344
MaeI CTAG 3 cut(s) 53, 195, 206
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 2 cut(s) 136, 374
MalI GATC 2 cut(s) 36, 392
MboI GATC 2 cut(s) 34, 390
MboII GAAGA 2 cut(s) 19, 284
MhlI GDGCHC 1 cut(s) 122
MlyI GAGTC 2 cut(s) 18, 19
MnlI CCTC 1 cut(s) 84
Mph1103I ATGCAT 1 cut(s) 400
MreI CGCCGGCG 1 cut(s) 43
MroI TCCGGA 1 cut(s) 175
MroNI GCCGGC 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 145
MspI CCGG 3 cut(s) 44, 176, 305
MspR9I CCNGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 325
NaeI GCCGGC 1 cut(s) 45
NciI CCSGG 1 cut(s) 305
NdeII GATC 2 cut(s) 34, 390
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 1 cut(s) 402
NlaIV GGNNCC 1 cut(s) 63
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 136, 374
NsiI ATGCAT 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PdiI GCCGGC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 291
PleI GAGTC 2 cut(s) 18, 18
PpsI GAGTC 2 cut(s) 18, 18
PshAI GACNNNNGTC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 402
RsaI GTAC 2 cut(s) 84, 302
RsaNI GTAC 2 cut(s) 83, 301
RseI CAYNNNNRTG 1 cut(s) 145
SaqAI TTAA 1 cut(s) 363
Sau3AI GATC 2 cut(s) 34, 390
Sau96I GGNCC 1 cut(s) 402
SchI GAGTC 2 cut(s) 18, 19
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 122
SetI ASST 6 cut(s) 76, 202, 261, 270, 358, 376
SfaNI GCATC 3 cut(s) 199, 317, 344
SgrAI CRCCGGYG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 145
SpeI ACTAGT 1 cut(s) 52
SsiI CCGC 3 cut(s) 47, 116, 326
SspMI CTAG 3 cut(s) 53, 195, 206
StyD4I CCNGG 1 cut(s) 303
TaiI ACGT 1 cut(s) 376
TaqI TCGA 2 cut(s) 70, 295
TaqII GACCGA 1 cut(s) 114
TatI WGTACW 1 cut(s) 82
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 2 cut(s) 127, 141
TseFI GTSAC 2 cut(s) 136, 374
Tsp45I GTSAC 2 cut(s) 136, 374
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 2 cut(s) 127, 141
XmiI GTMKAC 2 cut(s) 91, 237
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 3 cut(s) 53, 195, 206
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.