Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Reverse (-)

18493723 .. 18519155

Gene Structure 25433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG201600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCTTGCAGGCAAACACATGGGCTACAACTACACCACTGTGGTGGAGTCCCCATATGGGGATCACTGGCGCAACCTACGCCGTATTGGTACTACCGATATCTACTCTCCCACTAGGCTCAACATGTTCTCGAGCATCAGGAAGGACGAAGTCAAGCAATTGCTGTTCAGACTCTCACACAACTCACGTGAAGATTTTGCAAAGGTGAACTTGAGATCCATGTTCTCTGAGCTGACATTTAACATCATAATGACAATGGTGGCAGGGAAGAGGTATTATGGAGATGGCATGTCAGACAAAGAAGAGGCCAAACAGTTCAGAGATCTCATGAGCGAGGGTTTGTCGTATGGTGGCGCAACAAATCCCTCAGATTTTGTGCCTATATTGAAATGGTTTGGAGGTGGTGGGGCTGAGAAGAAGGTGATGGACTTGGGTAAGAGGATGGATGCTTTCTTGCAAGGTTTGATCGATGAGCAGAATCTGAGTAAAACTACTTCAGATCGGAGTACAGCAAATACTTTGATCCGCCATTTACTTTCTCTTCAAGAATCACAGCCTGAGTATTACACTGATCAAATTATCAAAGGGCTTATACTGGTCATGCTTTTGGGGGGTACTGATTCTTCATCCCTAACAATGGAATGGGTCATGTCCAATCTGCTCAACCATCCTGAGGTCATGCTTTTGGTGGGTACTGATTCATCATCCTTGACGCTGGAATGGGCCATGTTCAATCTGCTCAACCATCCTGAGGTGCTAAAAAGGGCTAGAGCTGAATTGGATGCTGAATTTGGACAAGAACACTTACTAGACGAACCAGATATCTTCAAACTACCTTACCTACAAAATATCATCTTCGAGACTCTCCGATTGTACCCTACAGCGCCACTACTAGTGATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

301

Amino Acids

34.29

Weight (kDa)

5.7

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	13 - 227	2e-20	Cytochrome P450
p450	PF00067	227 - 299	5.3e-17	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	526
AclWI	GGATC	3 cut(s)	69, 210, 517
AcsI	RAATTY	1 cut(s)	788
AcuI	CTGAAG	1 cut(s)	480
AcvI	CACGTG	1 cut(s)	188
AfaI	GTAC	5 cut(s)	91, 508, 616, 694, 875
AfiI	CCNNNNNNNGG	5 cut(s)	57, 58, 637, 673, 751
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	4 cut(s)	388, 545, 733, 829
AhlI	ACTAGT	1 cut(s)	892
AleI	CACNNNNGTG	2 cut(s)	38, 41
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	2 cut(s)	232, 773
AluI	AGCT	2 cut(s)	232, 773
Alw26I	GTCTC	1 cut(s)	854
AlwI	GGATC	3 cut(s)	69, 210, 517
AlwNI	CAGNNNCTG	1 cut(s)	481
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	2 cut(s)	306, 723
ApoI	RAATTY	1 cut(s)	788
AspLEI	GCGC	3 cut(s)	72, 356, 886
AspS9I	GGNCC	1 cut(s)	723
AsuHPI	GGTGA	2 cut(s)	217, 433
AvaI	CYCGRG	1 cut(s)	130
AxyI	CCTNAGG	2 cut(s)	672, 750
BarI	GAAGNNNNNNTAC	4 cut(s)	478, 510, 607, 639
BbrPI	CACGTG	1 cut(s)	188
BccI	CCATC	5 cut(s)	278, 418, 436, 675, 753
BceAI	ACGGC	1 cut(s)	66
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	1 cut(s)	854
BcuI	ACTAGT	1 cut(s)	892
BfaI	CTAG	4 cut(s)	114, 768, 809, 893
BfmI	CTRYAG	1 cut(s)	879
BfoI	RGCGCY	1 cut(s)	887
BglII	AGATCT	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	723
BmsI	GCATC	3 cut(s)	144, 436, 772
BpuEI	CTTGAG	1 cut(s)	232
Bsa29I	ATCGAT	1 cut(s)	468
BsaAI	YACGTR	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 58, 637, 673, 751
Bse1I	ACTGG	2 cut(s)	71, 600
Bse21I	CCTNAGG	2 cut(s)	672, 750
BseCI	ATCGAT	1 cut(s)	468
BseGI	GGATG	7 cut(s)	447, 451, 626, 667, 704, 745, 787
BseLI	CCNNNNNNNGG	5 cut(s)	57, 58, 637, 673, 751
BseMII	CTCAG	7 cut(s)	219, 381, 402, 473, 549, 663, 741
BseNI	ACTGG	2 cut(s)	71, 600
BshFI	GGCC	2 cut(s)	308, 725
BshVI	ATCGAT	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	130
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	5 cut(s)	57, 58, 637, 673, 751
BsmAI	GTCTC	1 cut(s)	854
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	308, 725
BsoBI	CYCGRG	1 cut(s)	130
Bsp143I	GATC	7 cut(s)	61, 215, 322, 465, 499, 522, 571
BspACI	CCGC	1 cut(s)	526
BspANI	GGCC	2 cut(s)	308, 725
BspCNI	CTCAG	7 cut(s)	220, 380, 403, 474, 550, 664, 742
BspDI	ATCGAT	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	327
BspPI	GGATC	3 cut(s)	69, 210, 517
BsrI	ACTGG	2 cut(s)	71, 600
BssMI	GATC	7 cut(s)	61, 215, 322, 465, 499, 522, 571
Bst4CI	ACNGT	2 cut(s)	40, 315
Bst6I	CTCTTC	3 cut(s)	263, 297, 546
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	6, 10
BstDEI	CTNAG	7 cut(s)	228, 367, 411, 482, 558, 672, 750
BstF5I	GGATG	7 cut(s)	447, 451, 626, 667, 704, 745, 787
BstH2I	RGCGCY	1 cut(s)	887
BstHHI	GCGC	3 cut(s)	72, 356, 886
BstKTI	GATC	7 cut(s)	64, 218, 325, 468, 502, 525, 574
BstMAI	GTCTC	1 cut(s)	854
BstMBI	GATC	7 cut(s)	61, 215, 322, 465, 499, 522, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNSI	RCATGY	2 cut(s)	127, 292
BstSFI	CTRYAG	1 cut(s)	879
BstX2I	RGATCY	2 cut(s)	215, 322
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	2 cut(s)	215, 322
Bsu15I	ATCGAT	1 cut(s)	468
Bsu36I	CCTNAGG	2 cut(s)	672, 750
BsuRI	GGCC	2 cut(s)	308, 725
BsuTUI	ATCGAT	1 cut(s)	468
BtsCI	GGATG	7 cut(s)	447, 451, 626, 667, 704, 745, 787
BtsIMutI	CAGTG	3 cut(s)	36, 64, 567
Cac8I	GCNNGC	2 cut(s)	6, 10
CaiI	CAGNNNCTG	1 cut(s)	481
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	3 cut(s)	72, 356, 886
Cfr13I	GGNCC	1 cut(s)	723
ClaI	ATCGAT	1 cut(s)	468
CseI	GACGC	1 cut(s)	721
Csp6I	GTAC	5 cut(s)	90, 507, 615, 693, 874
CviAII	CATG	9 cut(s)	19, 124, 220, 289, 328, 601, 649, 679, 727
CviQI	GTAC	5 cut(s)	90, 507, 615, 693, 874
DdeI	CTNAG	7 cut(s)	228, 367, 411, 482, 558, 672, 750
DpnI	GATC	7 cut(s)	63, 217, 324, 467, 501, 524, 573
DpnII	GATC	7 cut(s)	61, 215, 322, 465, 499, 522, 571
Eam1104I	CTCTTC	3 cut(s)	263, 297, 546
EarI	CTCTTC	3 cut(s)	263, 297, 546
EciI	GGCGGA	1 cut(s)	515
Eco32I	GATATC	2 cut(s)	100, 823
Eco57I	CTGAAG	1 cut(s)	480
Eco72I	CACGTG	1 cut(s)	188
Eco81I	CCTNAGG	2 cut(s)	672, 750
Eco88I	CYCGRG	1 cut(s)	130
EcoRV	GATATC	2 cut(s)	100, 823
FaeI	CATG	9 cut(s)	22, 127, 223, 292, 331, 604, 652, 682, 730
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	9 cut(s)	18, 123, 219, 288, 327, 600, 648, 678, 726
FauNDI	CATATG	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	571
FokI	GGATG	7 cut(s)	454, 458, 613, 654, 691, 732, 794
FspBI	CTAG	4 cut(s)	114, 768, 809, 893
GlaI	GCGC	3 cut(s)	71, 355, 885
HaeII	RGCGCY	1 cut(s)	887
HaeIII	GGCC	2 cut(s)	308, 725
HgaI	GACGC	1 cut(s)	721
HhaI	GCGC	3 cut(s)	72, 356, 886
Hin1II	CATG	9 cut(s)	22, 127, 223, 292, 331, 604, 652, 682, 730
Hin6I	GCGC	3 cut(s)	70, 354, 884
HinP1I	GCGC	3 cut(s)	70, 354, 884
HinfI	GANTC	7 cut(s)	47, 171, 478, 548, 620, 698, 862
HphI	GGTGA	2 cut(s)	217, 433
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	9 cut(s)	170, 229, 295, 320, 370, 483, 499, 504, 869
Hpy188III	TCNNGA	7 cut(s)	130, 139, 328, 545, 671, 749, 859
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	2 cut(s)	136, 412
HpyCH4III	ACNGT	2 cut(s)	40, 315
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	8, 200, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	7 cut(s)	228, 367, 411, 482, 558, 672, 750
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	9 cut(s)	22, 127, 223, 292, 331, 604, 652, 682, 730
HspAI	GCGC	3 cut(s)	70, 354, 884
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	7 cut(s)	61, 215, 322, 465, 499, 522, 571
LpnPI	CCDG	9 cut(s)	52, 124, 249, 570, 581, 684, 701, 762, 831
LweI	GCATC	3 cut(s)	144, 436, 772
MaeI	CTAG	4 cut(s)	114, 768, 809, 893
MaeII	ACGT	1 cut(s)	187
MalI	GATC	7 cut(s)	63, 217, 324, 467, 501, 524, 573
MboI	GATC	7 cut(s)	61, 215, 322, 465, 499, 522, 571
MboII	GAAGA	8 cut(s)	203, 280, 314, 427, 533, 615, 817, 847
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	2 cut(s)	215, 322
MluCI	AATT	4 cut(s)	158, 576, 776, 788
MlyI	GAGTC	3 cut(s)	56, 165, 856
MnlI	CCTC	8 cut(s)	264, 298, 328, 376, 392, 432, 667, 745
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	3 cut(s)	38, 41, 248
MunI	CAATTG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	78
NdeI	CATATG	1 cut(s)	55
NdeII	GATC	7 cut(s)	61, 215, 322, 465, 499, 522, 571
NlaIII	CATG	9 cut(s)	22, 127, 223, 292, 331, 604, 652, 682, 730
NspI	RCATGY	2 cut(s)	127, 292
OliI	CACNNNNGTG	2 cut(s)	38, 41
PaeR7I	CTCGAG	1 cut(s)	130
PagI	TCATGA	1 cut(s)	327
PciI	ACATGT	1 cut(s)	123
PfeI	GAWTC	4 cut(s)	478, 548, 620, 698
PflFI	GACNNNGTC	1 cut(s)	149
PleI	GAGTC	3 cut(s)	55, 165, 856
PmaCI	CACGTG	1 cut(s)	188
PmlI	CACGTG	1 cut(s)	188
PpsI	GAGTC	3 cut(s)	55, 165, 856
Ppu21I	YACGTR	1 cut(s)	188
PscI	ACATGT	1 cut(s)	123
PspCI	CACGTG	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	723
PstNI	CAGNNNCTG	1 cut(s)	481
PsuI	RGATCY	2 cut(s)	215, 322
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	5 cut(s)	91, 508, 616, 694, 875
RsaNI	GTAC	5 cut(s)	90, 507, 615, 693, 874
RseI	CAYNNNNRTG	3 cut(s)	38, 41, 248
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	7 cut(s)	61, 215, 322, 465, 499, 522, 571
Sau96I	GGNCC	1 cut(s)	723
SchI	GAGTC	3 cut(s)	56, 165, 856
SfaNI	GCATC	3 cut(s)	144, 436, 772
SfcI	CTRYAG	1 cut(s)	879
Sfr274I	CTCGAG	1 cut(s)	130
SlaI	CTCGAG	1 cut(s)	130
SmiMI	CAYNNNNRTG	3 cut(s)	38, 41, 248
SmlI	CTYRAG	2 cut(s)	130, 211
SmoI	CTYRAG	2 cut(s)	130, 211
SpeI	ACTAGT	1 cut(s)	892
Sse9I	AATT	4 cut(s)	158, 576, 776, 788
SsiI	CCGC	1 cut(s)	526
SspMI	CTAG	4 cut(s)	114, 768, 809, 893
TaaI	ACNGT	2 cut(s)	40, 315
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	3 cut(s)	131, 468, 858
TasI	AATT	4 cut(s)	158, 576, 776, 788
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	4 cut(s)	478, 548, 620, 698
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	3 cut(s)	43, 71, 574
TspDTI	ATGAA	2 cut(s)	615, 690
TspRI	CASTG	3 cut(s)	43, 71, 574
Tth111I	GACNNNGTC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	788
XceI	RCATGY	2 cut(s)	127, 292
XhoI	CTCGAG	1 cut(s)	130
XspI	CTAG	4 cut(s)	114, 768, 809, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.