FvH4_1g16862

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000218
Physical Location & Seq
Reverse (-)
9766581 .. 9768143
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16862.t1

Sequence Viewer

Length: 951 bp
ATGGCCCTGTTGTTTCCCTCTGGTTTGGCTCACGTCCTGTGGTTGGACAATGAAGAGGCCAAACAGTTCAGAGATATCATGAGCAAGAGTTTCTCGTATGCTGGCGCAACAAACCCCTCAGACTTTGTGCCTATTTTGAAATGGTTTGGGGGTGGTAGGTTTGAGAAGAAGGTGATGGACTTGGGTAAGAGGATGGATGCATTCTTGCAAGGTTTGATTGATGAGCAGAATCTGAGTAAAACTACATCAGATCAGAGTAAAGCAAGCACGATTATCCACCATTTACTATCTCGGCAAGAATCAGAACCTGAATACTATACTGACCAAATTATCAAGGGGCATATACTGGTCATGCTTATGGCGGGTACTGATTCATCATCCCTGACAATAGAATGGGCCATGTCCAATCTGCTCAACCATCCTGAGGTGCTAAAAAGGGCTAGAGCTGAACTGGATGCTGAATTGGGACAAGAACGCTTAATAGACGAACCAGATATCTTCAAACTACCTTACCTACAAAGTATCTCTGAGACTCTCCGCTTGTACCCTACAGCCCCACTACTAGTACCACATTATTCATCTAATGACTGCACCATAGGAGGATTCAATGTGCAGCGTGACACAATGGTAATGATCAATGCTTGGGCCATACATAGAGATCCTATGTTGTGGGACGATCCCGAAAGCTTCAAGCCTGAAAGGTTTGCAAATGGTGGAGAAGAGCCATACAAGCTCATGCCATTTGGACAAGGAAGAAGGCTTTGCCCTGGTATGGGCTTGGCGCAACGTGTGGTTGGCTTAACTCTGGGATCATTGATTCAATGTTTCGAGTGGGAAAGAGTTGGTGATATAAAGGTTGATATGAGTGAAGGTAAAGGACTCACAATGCCTAAAGCTGTGCCACTGGAGGCTATGTGCAAAGCACGCCCAATCTTAAGCAAGGTCTCCTAG

Protein Analysis

317

Amino Acids

35.52

Weight (kDa)

5.59

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 15 - 297 7.1e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 362, 538
AclWI GGATC 3 cut(s) 653, 671, 817
AfaI GTAC 3 cut(s) 367, 545, 567
AfiI CCNNNNNNNGG 4 cut(s) 43, 424, 772, 773
AflII CTTAAG 1 cut(s) 934
AflIII ACRYGT 1 cut(s) 787
AgsI TTSAA 5 cut(s) 139, 502, 607, 691, 821
AhlI ACTAGT 1 cut(s) 562
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 766
AluBI AGCT 4 cut(s) 446, 687, 733, 896
AluI AGCT 4 cut(s) 446, 687, 733, 896
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 3 cut(s) 653, 671, 817
AlwNI CAGNNNCTG 2 cut(s) 232, 308
AoxI GGCC 4 cut(s) 3, 57, 396, 645
ApeKI GCWGC 1 cut(s) 613
AspLEI GCGC 2 cut(s) 107, 784
AspS9I GGNCC 3 cut(s) 4, 396, 645
AsuHPI GGTGA 2 cut(s) 184, 857
AxyI CCTNAGG 1 cut(s) 423
BbvI GCAGC 1 cut(s) 625
BccI CCATC 3 cut(s) 169, 187, 426
BciT130I CCWGG 1 cut(s) 768
BclI TGATCA 1 cut(s) 633
BcoDI GTCTC 1 cut(s) 524
BcuI ACTAGT 1 cut(s) 562
BfaI CTAG 3 cut(s) 441, 563, 949
BfmI CTRYAG 1 cut(s) 549
BfrI CTTAAG 1 cut(s) 934
BisI GCNGC 1 cut(s) 614
BlsI GCNGC 1 cut(s) 615
Bme1390I CCNGG 1 cut(s) 768
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 3 cut(s) 4, 396, 645
BmrFI CCNGG 1 cut(s) 768
BmsI GCATC 2 cut(s) 187, 445
BpmI CTGGAG 1 cut(s) 926
BsaJI CCNNGG 1 cut(s) 766
BsaXI ACNNNNNCTCC 2 cut(s) 899, 929
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 424, 772, 773
Bse1I ACTGG 3 cut(s) 351, 456, 909
Bse21I CCTNAGG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 768
BseDI CCNNGG 1 cut(s) 766
BseGI GGATG 5 cut(s) 198, 202, 377, 418, 460
BseLI CCNNNNNNNGG 4 cut(s) 43, 424, 772, 773
BseMII CTCAG 4 cut(s) 132, 224, 414, 519
BseNI ACTGG 3 cut(s) 351, 456, 909
BseXI GCAGC 1 cut(s) 625
BsgI GTGCAG 2 cut(s) 574, 632
BshFI GGCC 4 cut(s) 5, 59, 398, 647
BslFI GGGAC 2 cut(s) 480, 686
BslI CCNNNNNNNGG 4 cut(s) 43, 424, 772, 773
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 2 cut(s) 480, 686
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 4 cut(s) 5, 59, 398, 647
Bsp143I GATC 5 cut(s) 250, 633, 658, 676, 809
BspACI CCGC 2 cut(s) 362, 538
BspANI GGCC 4 cut(s) 5, 59, 398, 647
BspCNI CTCAG 4 cut(s) 131, 225, 415, 520
BspHI TCATGA 1 cut(s) 78
BspPI GGATC 3 cut(s) 653, 671, 817
BspQI GCTCTTC 1 cut(s) 714
BspTI CTTAAG 1 cut(s) 934
BsrI ACTGG 3 cut(s) 351, 456, 909
BssECI CCNNGG 1 cut(s) 766
BssMI GATC 5 cut(s) 250, 633, 658, 676, 809
Bst2UI CCWGG 1 cut(s) 768
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 2 cut(s) 48, 714
BstAFI CTTAAG 1 cut(s) 934
BstC8I GCNNGC 3 cut(s) 103, 265, 925
BstDEI CTNAG 4 cut(s) 118, 233, 423, 528
BstF5I GGATG 5 cut(s) 198, 202, 377, 418, 460
BstHHI GCGC 2 cut(s) 107, 784
BstKTI GATC 5 cut(s) 253, 636, 661, 679, 812
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 5 cut(s) 250, 633, 658, 676, 809
BstMWI GCNNNNNNNGC 2 cut(s) 730, 924
BstNI CCWGG 1 cut(s) 768
BstSCI CCNGG 1 cut(s) 766
BstSFI CTRYAG 1 cut(s) 549
BstV1I GCAGC 1 cut(s) 625
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 4 cut(s) 5, 59, 398, 647
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 5 cut(s) 198, 202, 377, 418, 460
BtsIMutI CAGTG 1 cut(s) 902
Cac8I GCNNGC 3 cut(s) 103, 265, 925
CaiI CAGNNNCTG 2 cut(s) 232, 308
CciI TCATGA 1 cut(s) 78
CfoI GCGC 2 cut(s) 107, 784
Cfr13I GGNCC 3 cut(s) 4, 396, 645
Csp6I GTAC 3 cut(s) 366, 544, 566
CviAII CATG 4 cut(s) 79, 352, 400, 736
CviQI GTAC 3 cut(s) 366, 544, 566
DdeI CTNAG 4 cut(s) 118, 233, 423, 528
DpnI GATC 5 cut(s) 252, 635, 660, 678, 811
DpnII GATC 5 cut(s) 250, 633, 658, 676, 809
Eam1104I CTCTTC 2 cut(s) 48, 714
EarI CTCTTC 2 cut(s) 48, 714
Eco32I GATATC 2 cut(s) 76, 496
Eco81I CCTNAGG 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 766
EcoRV GATATC 2 cut(s) 76, 496
EcoT22I ATGCAT 1 cut(s) 202
FaeI CATG 4 cut(s) 82, 355, 403, 739
FaqI GGGAC 2 cut(s) 480, 686
FatI CATG 4 cut(s) 78, 351, 399, 735
FauI CCCGC 1 cut(s) 355
FbaI TGATCA 1 cut(s) 633
Fnu4HI GCNGC 1 cut(s) 614
FokI GGATG 5 cut(s) 205, 209, 364, 405, 467
Fsp4HI GCNGC 1 cut(s) 614
FspBI CTAG 3 cut(s) 441, 563, 949
GlaI GCGC 2 cut(s) 106, 783
GluI GCNGC 1 cut(s) 614
GsuI CTGGAG 1 cut(s) 926
HaeIII GGCC 4 cut(s) 5, 59, 398, 647
HhaI GCGC 2 cut(s) 107, 784
Hin1II CATG 4 cut(s) 82, 355, 403, 739
Hin6I GCGC 2 cut(s) 105, 782
HinP1I GCGC 2 cut(s) 105, 782
HindIII AAGCTT 1 cut(s) 685
HinfI GANTC 7 cut(s) 229, 299, 371, 532, 603, 817, 879
HphI GGTGA 2 cut(s) 184, 857
Hpy188I TCNGA 7 cut(s) 71, 121, 234, 250, 255, 304, 529
Hpy188III TCNNGA 3 cut(s) 79, 422, 680
HpyAV CCTTC 3 cut(s) 163, 750, 863
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 2 cut(s) 33, 787
HpyCH4V TGCA 6 cut(s) 200, 208, 591, 613, 707, 918
HpyF10VI GCNNNNNNNGC 2 cut(s) 730, 924
HpyF3I CTNAG 4 cut(s) 118, 233, 423, 528
HpySE526I ACGT 2 cut(s) 33, 787
Hsp92II CATG 4 cut(s) 82, 355, 403, 739
HspAI GCGC 2 cut(s) 105, 782
Ksp22I TGATCA 1 cut(s) 633
Kzo9I GATC 5 cut(s) 250, 633, 658, 676, 809
LguI GCTCTTC 1 cut(s) 714
Lsp1109I GCAGC 1 cut(s) 625
LweI GCATC 2 cut(s) 187, 445
MaeI CTAG 3 cut(s) 441, 563, 949
MaeII ACGT 2 cut(s) 33, 787
MaeIII GTNAC 1 cut(s) 617
MalI GATC 5 cut(s) 252, 635, 660, 678, 811
MboI GATC 5 cut(s) 250, 633, 658, 676, 809
MboII GAAGA 5 cut(s) 65, 178, 490, 731, 765
MflI RGATCY 1 cut(s) 658
MluCI AATT 2 cut(s) 327, 461
MlyI GAGTC 2 cut(s) 526, 873
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 7 cut(s) 28, 49, 127, 183, 418, 593, 901
Mph1103I ATGCAT 1 cut(s) 202
MseI TTAA 3 cut(s) 479, 800, 935
MslI CAYNNNNRTG 1 cut(s) 356
MspCI CTTAAG 1 cut(s) 934
MspR9I CCNGG 1 cut(s) 768
Mva1269I GAATGC 1 cut(s) 200
MvaI CCWGG 1 cut(s) 768
MwoI GCNNNNNNNGC 2 cut(s) 730, 924
NdeII GATC 5 cut(s) 250, 633, 658, 676, 809
NlaIII CATG 4 cut(s) 82, 355, 403, 739
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 617
NsiI ATGCAT 1 cut(s) 202
PagI TCATGA 1 cut(s) 78
PciSI GCTCTTC 1 cut(s) 714
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 5 cut(s) 229, 299, 371, 603, 817
PkrI GCNGC 1 cut(s) 615
PleI GAGTC 2 cut(s) 526, 873
PpsI GAGTC 2 cut(s) 526, 873
Psp6I CCWGG 1 cut(s) 766
PspGI CCWGG 1 cut(s) 766
PspPI GGNCC 3 cut(s) 4, 396, 645
PstNI CAGNNNCTG 2 cut(s) 232, 308
PsuI RGATCY 1 cut(s) 658
RsaI GTAC 3 cut(s) 367, 545, 567
RsaNI GTAC 3 cut(s) 366, 544, 566
RseI CAYNNNNRTG 1 cut(s) 356
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 3 cut(s) 479, 800, 935
SatI GCNGC 1 cut(s) 614
Sau3AI GATC 5 cut(s) 250, 633, 658, 676, 809
Sau96I GGNCC 3 cut(s) 4, 396, 645
SchI GAGTC 2 cut(s) 526, 873
ScrFI CCNGG 1 cut(s) 768
SfaNI GCATC 2 cut(s) 187, 445
SfcI CTRYAG 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 934
SmoI CTYRAG 1 cut(s) 934
SpeI ACTAGT 1 cut(s) 562
Sse9I AATT 2 cut(s) 327, 461
SsiI CCGC 2 cut(s) 362, 538
SspMI CTAG 3 cut(s) 441, 563, 949
StyD4I CCNGG 1 cut(s) 766
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 2 cut(s) 36, 790
TaqI TCGA 1 cut(s) 828
TasI AATT 2 cut(s) 327, 461
TfiI GAWTC 5 cut(s) 229, 299, 371, 603, 817
Tru1I TTAA 3 cut(s) 479, 800, 935
Tru9I TTAA 3 cut(s) 479, 800, 935
TscAI CASTG 1 cut(s) 909
TseFI GTSAC 1 cut(s) 617
TseI GCWGC 1 cut(s) 613
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 3 cut(s) 66, 363, 567
TspRI CASTG 1 cut(s) 909
Vha464I CTTAAG 1 cut(s) 934
XspI CTAG 3 cut(s) 441, 563, 949
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.