Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Reverse (-)

36765020 .. 36765815

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG305000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCCTCCTCACCCTACGGCGACCACTGGCGCAACGTTCGCCGTATCGGCACCGTCGAGGTCTTGTCCACTGGCCGGCTTAACTCGTTCTCTGATGTCCGAAAAGACGAAGTCAAGCATTTGCTGCGCAAGCTCTCTCAAAACGCAGGGGAAGAAGGTGGTTTTGTGAAGGTGGAGCTGAGGTCTATGTTCTATGAGCTGACCTTCAACAACATAATGACAATGGTAGCAGGAAAGAGGTTCGCCGGGGACCATGTTTTGAACAAAGAAAAGGGGAAGGAGTTCATTGAGATCATGAACGAGACTCTCTCGTTAGGTGGGGGAACCAATCCCGGAGAATTCATGCCCTTTCTCAATTGGTTTGGCGGTAGTGGTTTTGAAGAGAAGGTGAAGAAGTTGGCCAAAAGAGCAGATGCGTTCTTTCAACATCTGATTGATGAACACAGGAACAAAAGTGCTTCGGAGAGTAAAATTACCATGATCGACCATTTGCTTTCCCAGCAGGAGTCACAGCCTCAGTACTACACCGATGACATTATCAAAGGACTAATACAGGTTTATTATTGGCGGGCACAGATACATCTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

196

Amino Acids

22.54

Weight (kDa)

7.94

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	7 - 182	2.5e-16	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	50
AciI	CCGC	2 cut(s)	366, 568
AclI	AACGTT	1 cut(s)	36
AcoI	YGGCCR	2 cut(s)	73, 399
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	4 cut(s)	208, 262, 380, 425
AluBI	AGCT	3 cut(s)	133, 178, 199
AluI	AGCT	3 cut(s)	133, 178, 199
Alw26I	GTCTC	1 cut(s)	296
AoxI	GGCC	2 cut(s)	73, 399
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	2 cut(s)	33, 129
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	2 cut(s)	247, 333
AsuHPI	GGTGA	2 cut(s)	3, 400
AvaII	GGWCC	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	574
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	111
BceAI	ACGGC	2 cut(s)	27, 34
BcnI	CCSGG	2 cut(s)	247, 333
BcoDI	GTCTC	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
BmcAI	AGTACT	1 cut(s)	521
Bme1390I	CCNGG	2 cut(s)	247, 333
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	3 cut(s)	52, 251, 325
BmrFI	CCNGG	2 cut(s)	247, 333
BmsI	GCATC	1 cut(s)	403
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
Bpu10I	CCTNAGC	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	247, 333
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	2 cut(s)	32, 76
BseDI	CCNNGG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	170, 530
BseNI	ACTGG	2 cut(s)	32, 76
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	498
BshFI	GGCC	2 cut(s)	75, 401
BshNI	GGYRCC	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	76, 246, 333
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	75, 401
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	2 cut(s)	291, 480
BspACI	CCGC	2 cut(s)	366, 568
BspANI	GGCC	2 cut(s)	75, 401
BspCNI	CTCAG	2 cut(s)	171, 529
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	3 cut(s)	52, 251, 325
BspMAI	CTGCAG	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	32, 76
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	2 cut(s)	291, 480
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	375
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	77, 131, 570
BstDEI	CTNAG	2 cut(s)	179, 516
BstHHI	GCGC	2 cut(s)	33, 129
BstKTI	GATC	2 cut(s)	294, 483
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	291, 480
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 48, 124, 130, 407, 499
BstSCI	CCNGG	2 cut(s)	245, 331
BstSFI	CTRYAG	1 cut(s)	584
BstSLI	GKGCMC	1 cut(s)	574
BstV1I	GCAGC	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	75, 401
BtsIMutI	CAGTG	2 cut(s)	25, 69
Cac8I	GCNNGC	3 cut(s)	77, 131, 570
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	2 cut(s)	33, 129
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	4 cut(s)	254, 295, 343, 478
CviJI	RGCY	7 cut(s)	75, 79, 133, 178, 199, 401, 514
CviKI_1	RGCY	7 cut(s)	75, 79, 133, 178, 199, 401, 514
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	2 cut(s)	179, 516
DpnI	GATC	2 cut(s)	293, 482
DpnII	GATC	2 cut(s)	291, 480
EaeI	YGGCCR	2 cut(s)	73, 399
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	338
FaeI	CATG	4 cut(s)	257, 298, 346, 481
FaiI	YATR	7 cut(s)	188, 195, 215, 255, 296, 344, 479
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	4 cut(s)	253, 294, 342, 477
FauI	CCCGC	1 cut(s)	561
Fnu4HI	GCNGC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	125
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	2 cut(s)	32, 128
GluI	GCNGC	1 cut(s)	125
GsaI	CCCAGC	1 cut(s)	502
HaeIII	GGCC	2 cut(s)	75, 401
HapII	CCGG	3 cut(s)	76, 246, 333
HhaI	GCGC	2 cut(s)	33, 129
Hin1II	CATG	4 cut(s)	257, 298, 346, 481
Hin6I	GCGC	2 cut(s)	31, 127
HinP1I	GCGC	2 cut(s)	31, 127
HinfI	GANTC	2 cut(s)	304, 506
HpaII	CCGG	3 cut(s)	76, 246, 333
HphI	GGTGA	2 cut(s)	3, 400
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	4 cut(s)	94, 101, 432, 463
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	1 cut(s)	69
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	149, 163, 214, 271, 379
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	586
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 48, 124, 130, 407, 499
HpyF3I	CTNAG	2 cut(s)	179, 516
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	257, 298, 346, 481
HspAI	GCGC	2 cut(s)	31, 127
KroI	GCCGGC	1 cut(s)	75
KroNI	GCCGGC	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	291, 480
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	1 cut(s)	403
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	2 cut(s)	293, 482
MboI	GATC	2 cut(s)	291, 480
MboII	GAAGA	3 cut(s)	164, 392, 403
MfeI	CAATTG	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	574
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	3 cut(s)	338, 355, 471
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	2 cut(s)	298, 515
MnlI	CCTC	6 cut(s)	16, 19, 52, 174, 231, 525
Mox20I	TGGCCA	1 cut(s)	401
MroNI	GCCGGC	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	401
MspI	CCGG	3 cut(s)	76, 246, 333
MspR9I	CCNGG	2 cut(s)	247, 333
MunI	CAATTG	1 cut(s)	355
MwoI	GCNNNNNNNGC	6 cut(s)	39, 48, 124, 130, 407, 499
NaeI	GCCGGC	1 cut(s)	77
NciI	CCSGG	2 cut(s)	247, 333
NdeII	GATC	2 cut(s)	291, 480
NgoMIV	GCCGGC	1 cut(s)	75
NlaIII	CATG	4 cut(s)	257, 298, 346, 481
NlaIV	GGNNCC	3 cut(s)	52, 251, 325
NmuCI	GTSAC	1 cut(s)	507
NsbI	TGCGCA	1 cut(s)	128
PagI	TCATGA	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	281
PflFI	GACNNNGTC	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	2 cut(s)	298, 514
PpsI	GAGTC	2 cut(s)	298, 514
Psp1406I	AACGTT	1 cut(s)	36
PspFI	CCCAGC	1 cut(s)	498
PspN4I	GGNNCC	3 cut(s)	52, 251, 325
PspPI	GGNCC	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	588
PsyI	GACNNNGTC	1 cut(s)	110
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	2 cut(s)	291, 480
Sau96I	GGNCC	1 cut(s)	250
ScaI	AGTACT	1 cut(s)	521
SchI	GAGTC	2 cut(s)	298, 515
ScrFI	CCNGG	2 cut(s)	247, 333
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	1 cut(s)	584
SinI	GGWCC	1 cut(s)	250
Sse9I	AATT	3 cut(s)	338, 355, 471
SsiI	CCGC	2 cut(s)	366, 568
StyD4I	CCNGG	2 cut(s)	245, 331
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	57, 483
TasI	AATT	3 cut(s)	338, 355, 471
TatI	WGTACW	1 cut(s)	519
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	32, 76
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	4 cut(s)	274, 311, 331, 453
TspRI	CASTG	2 cut(s)	32, 76
Tth111I	GACNNNGTC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	281
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.