FvH4_1g23681

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000218
Physical Location & Seq
Reverse (-)
15553756 .. 15555725
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23681.t1

Sequence Viewer

Length: 876 bp
ATGGACGAGGCCTTTTCGTACAGTGGGGGAACCAACCCCGGAGAATTCATGCCCTTTCTTAGATGGTTTGATGGTAATAATTATGAGAAGAAGGTAGAGAAATTGGGCAAGAGAGCAGATGCGTTCTTGCAACGTCTCATTGATGAACACAAGAACAGGAGTGCTTCGGAGGGTAGAAATACCATGATCGACCATTTGCTTTCCCGGCAGGAGTCACAACCTGAGTATTACAGCGATGAGATTATCAAAGGACTCATACAGAGTCTTCTAATTGCGGGAACAGATACATCGGCAGTGACATTAGAATGGGCTATGTCCAATTTGCTAAACCATCCGGATGTATTGAAGAAGGCTAGAGCTGAATTGGATGCTCAAATTGGTCAAGAACGCCTAGTAGAAGAATCAGACCTCTCTAAGCTTAACTACCTACAAAGTATCATCTCTGAGACTCTTCGACTGTACCCGGCGGCGCCAATGCTACTACCGCATTTCGCTTCCGATGATTGTATTGTCAGTGGATTCGATATACCAAGCGACACATTGGTATTGGTCAATGCATGGGCAATACATAGAGATCCCACGTTGTGGGATGATCCTGAAAGCTTCAAACCTGAGAGGTTTGTAATGGGCCGCAACAAGGATGAGGCACACAAGTTTATTCCGTTCGGAATGGGCAGGAGGGCTTGTCCTGGAGCAGGATTGGCACAACGTGAGGTAGGCTTGACTTTGGCCTCATTGATTCAATGCTTTGAGTGGAAGAGGGTAAGTGATAAGGAGTTTGATATGACGGAAGGAAAAGGACTCACCATGCCTAAACTTGTGCCATTGGAGGCCATGTGCAAACCACGCTCATGTTTTAACAAGCTTTCTCATTGA

Protein Analysis

292

Amino Acids

32.93

Weight (kDa)

5.48

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 14 - 272 1.1e-75 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 469
AccB7I CCANNNNNTGG 1 cut(s) 585
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 4 cut(s) 275, 467, 485, 631
AclWI GGATC 2 cut(s) 569, 587
AcsI RAATTY 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 470
AdeI CACNNNGTG 2 cut(s) 585, 710
AfaI GTAC 2 cut(s) 20, 461
AfiI CCNNNNNNNGG 3 cut(s) 585, 637, 695
AgsI TTSAA 3 cut(s) 346, 607, 743
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 4 cut(s) 359, 418, 603, 865
AluI AGCT 4 cut(s) 359, 418, 603, 865
Alw26I GTCTC 2 cut(s) 140, 440
AlwI GGATC 2 cut(s) 569, 587
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 4 cut(s) 9, 628, 729, 831
ApoI RAATTY 1 cut(s) 44
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 1 cut(s) 628
AsuC2I CCSGG 3 cut(s) 39, 205, 464
AsuHPI GGTGA 1 cut(s) 796
BanI GGYRCC 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 257
BccI CCATC 3 cut(s) 57, 65, 339
BciT130I CCWGG 1 cut(s) 690
BcnI CCSGG 3 cut(s) 39, 205, 464
BcoDI GTCTC 2 cut(s) 140, 440
BfaI CTAG 2 cut(s) 354, 392
BfoI RGCGCY 1 cut(s) 473
BisI GCNGC 2 cut(s) 468, 631
BlsI GCNGC 2 cut(s) 469, 632
Bme1390I CCNGG 4 cut(s) 39, 205, 464, 690
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 2 cut(s) 31, 471
BmrFI CCNGG 4 cut(s) 39, 205, 464, 690
BmsI GCATC 2 cut(s) 109, 358
BpiI GAAGAC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 711
BpuMI CCSGG 3 cut(s) 39, 205, 464
BsaHI GRCGYC 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 4 cut(s) 670, 700, 821, 851
Bsc4I CCNNNNNNNGG 3 cut(s) 585, 637, 695
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 5 cut(s) 331, 343, 373, 595, 646
BseLI CCNNNNNNNGG 3 cut(s) 585, 637, 695
BseMII CTCAG 3 cut(s) 213, 435, 603
BshFI GGCC 4 cut(s) 11, 630, 731, 833
BshNI GGYRCC 1 cut(s) 469
BsiSI CCGG 4 cut(s) 39, 205, 335, 464
BslI CCNNNNNNNGG 3 cut(s) 585, 637, 695
BsmAI GTCTC 2 cut(s) 140, 440
BsmBI CGTCTC 1 cut(s) 140
BsnI GGCC 4 cut(s) 11, 630, 731, 833
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 3 cut(s) 186, 574, 592
BspACI CCGC 4 cut(s) 275, 467, 485, 631
BspANI GGCC 4 cut(s) 11, 630, 731, 833
BspCNI CTCAG 3 cut(s) 214, 436, 604
BspEI TCCGGA 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 31, 471
BspPI GGATC 2 cut(s) 569, 587
BspT107I GGYRCC 1 cut(s) 469
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 3 cut(s) 186, 574, 592
BssNI GRCGYC 1 cut(s) 470
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 2 cut(s) 23, 459
Bst6I CTCTTC 2 cut(s) 456, 752
BstACI GRCGYC 1 cut(s) 470
BstDEI CTNAG 5 cut(s) 59, 222, 414, 444, 612
BstENI CCTNNNNNAGG 1 cut(s) 693
BstF5I GGATG 5 cut(s) 331, 343, 373, 595, 646
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 3 cut(s) 189, 577, 595
BstMAI GTCTC 2 cut(s) 140, 440
BstMBI GATC 3 cut(s) 186, 574, 592
BstMWI GCNNNNNNNGC 4 cut(s) 205, 484, 701, 846
BstNI CCWGG 1 cut(s) 690
BstSCI CCNGG 4 cut(s) 37, 203, 462, 688
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 4 cut(s) 11, 630, 731, 833
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 5 cut(s) 331, 343, 373, 595, 646
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 3 cut(s) 28, 300, 520
CfoI GCGC 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 628
Csp6I GTAC 2 cut(s) 19, 460
CviAII CATG 6 cut(s) 49, 184, 558, 808, 835, 852
CviQI GTAC 2 cut(s) 19, 460
DdeI CTNAG 5 cut(s) 59, 222, 414, 444, 612
DinI GGCGCC 1 cut(s) 471
DpnI GATC 3 cut(s) 188, 576, 594
DpnII GATC 3 cut(s) 186, 574, 592
DraIII CACNNNGTG 2 cut(s) 585, 710
Eam1104I CTCTTC 2 cut(s) 456, 752
EarI CTCTTC 2 cut(s) 456, 752
Eco147I AGGCCT 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 693
EcoRI GAATTC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 688
EcoT22I ATGCAT 1 cut(s) 559
EgeI GGCGCC 1 cut(s) 471
EheI GGCGCC 1 cut(s) 471
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 6 cut(s) 52, 187, 561, 811, 838, 855
FatI CATG 6 cut(s) 48, 183, 557, 807, 834, 851
FauI CCCGC 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 468, 631
FokI GGATG 5 cut(s) 318, 350, 380, 602, 653
Fsp4HI GCNGC 2 cut(s) 468, 631
FspBI CTAG 2 cut(s) 354, 392
GlaI GCGC 1 cut(s) 471
GluI GCNGC 2 cut(s) 468, 631
GsuI CTGGAG 1 cut(s) 711
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 4 cut(s) 11, 630, 731, 833
HapII CCGG 4 cut(s) 39, 205, 335, 464
HhaI GCGC 1 cut(s) 472
Hin1I GRCGYC 1 cut(s) 470
Hin1II CATG 6 cut(s) 52, 187, 561, 811, 838, 855
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HindIII AAGCTT 3 cut(s) 416, 601, 863
HinfI GANTC 8 cut(s) 212, 252, 262, 401, 448, 519, 739, 801
HpaII CCGG 4 cut(s) 39, 205, 335, 464
HphI GGTGA 1 cut(s) 796
Hpy188I TCNGA 5 cut(s) 169, 406, 445, 499, 668
Hpy188III TCNNGA 3 cut(s) 335, 383, 596
HpyAV CCTTC 3 cut(s) 85, 343, 785
HpyCH4III ACNGT 2 cut(s) 23, 459
HpyCH4IV ACGT 3 cut(s) 133, 581, 709
HpyCH4V TGCA 3 cut(s) 130, 557, 840
HpyF10VI GCNNNNNNNGC 4 cut(s) 205, 484, 701, 846
HpyF3I CTNAG 5 cut(s) 59, 222, 414, 444, 612
HpySE526I ACGT 3 cut(s) 133, 581, 709
Hsp92I GRCGYC 1 cut(s) 470
Hsp92II CATG 6 cut(s) 52, 187, 561, 811, 838, 855
HspAI GCGC 1 cut(s) 470
KasI GGCGCC 1 cut(s) 469
Kpn2I TCCGGA 1 cut(s) 334
Kzo9I GATC 3 cut(s) 186, 574, 592
LmnI GCTCC 1 cut(s) 692
LweI GCATC 2 cut(s) 109, 358
MaeI CTAG 2 cut(s) 354, 392
MaeII ACGT 3 cut(s) 133, 581, 709
MaeIII GTNAC 2 cut(s) 213, 295
MalI GATC 3 cut(s) 188, 576, 594
MboI GATC 3 cut(s) 186, 574, 592
MboII GAAGA 6 cut(s) 100, 257, 358, 410, 443, 769
MflI RGATCY 1 cut(s) 574
MluCI AATT 7 cut(s) 44, 79, 101, 270, 319, 362, 375
Mly113I GGCGCC 1 cut(s) 470
MlyI GAGTC 5 cut(s) 221, 246, 271, 442, 795
MnlI CCTC 9 cut(s) 163, 419, 609, 637, 672, 706, 742, 753, 823
Mph1103I ATGCAT 1 cut(s) 559
MroI TCCGGA 1 cut(s) 334
MseI TTAA 2 cut(s) 420, 858
MslI CAYNNNNRTG 3 cut(s) 304, 336, 850
MspI CCGG 4 cut(s) 39, 205, 335, 464
MspR9I CCNGG 4 cut(s) 39, 205, 464, 690
MvaI CCWGG 1 cut(s) 690
MwoI GCNNNNNNNGC 4 cut(s) 205, 484, 701, 846
NarI GGCGCC 1 cut(s) 470
NciI CCSGG 3 cut(s) 39, 205, 464
NdeII GATC 3 cut(s) 186, 574, 592
NlaIII CATG 6 cut(s) 52, 187, 561, 811, 838, 855
NlaIV GGNNCC 2 cut(s) 31, 471
NmuCI GTSAC 2 cut(s) 213, 295
NsiI ATGCAT 1 cut(s) 559
PceI AGGCCT 1 cut(s) 11
PfeI GAWTC 3 cut(s) 401, 519, 739
PflMI CCANNNNNTGG 1 cut(s) 585
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 2 cut(s) 469, 632
PleI GAGTC 5 cut(s) 220, 246, 270, 442, 795
PluTI GGCGCC 1 cut(s) 473
PpsI GAGTC 5 cut(s) 220, 246, 270, 442, 795
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 2 cut(s) 31, 471
PspPI GGNCC 1 cut(s) 628
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 2 cut(s) 20, 461
RsaNI GTAC 2 cut(s) 19, 460
RseI CAYNNNNRTG 3 cut(s) 304, 336, 850
SaqAI TTAA 2 cut(s) 420, 858
SatI GCNGC 2 cut(s) 468, 631
Sau3AI GATC 3 cut(s) 186, 574, 592
Sau96I GGNCC 1 cut(s) 628
SchI GAGTC 5 cut(s) 221, 246, 271, 442, 795
ScrFI CCNGG 4 cut(s) 39, 205, 464, 690
SfaNI GCATC 2 cut(s) 109, 358
SfoI GGCGCC 1 cut(s) 471
SmiMI CAYNNNNRTG 3 cut(s) 304, 336, 850
Sse9I AATT 7 cut(s) 44, 79, 101, 270, 319, 362, 375
SseBI AGGCCT 1 cut(s) 11
SsiI CCGC 4 cut(s) 275, 467, 485, 631
SspDI GGCGCC 1 cut(s) 469
SspMI CTAG 2 cut(s) 354, 392
StuI AGGCCT 1 cut(s) 11
StyD4I CCNGG 4 cut(s) 37, 203, 462, 688
TaaI ACNGT 2 cut(s) 23, 459
TaiI ACGT 3 cut(s) 136, 584, 712
TaqI TCGA 3 cut(s) 189, 454, 522
TasI AATT 7 cut(s) 44, 79, 101, 270, 319, 362, 375
TauI GCSGC 2 cut(s) 470, 633
TfiI GAWTC 3 cut(s) 401, 519, 739
Tru1I TTAA 2 cut(s) 420, 858
Tru9I TTAA 2 cut(s) 420, 858
TscAI CASTG 3 cut(s) 28, 300, 520
TseFI GTSAC 2 cut(s) 213, 295
Tsp45I GTSAC 2 cut(s) 213, 295
TspDTI ATGAA 2 cut(s) 37, 159
TspGWI ACGGA 2 cut(s) 651, 803
TspRI CASTG 3 cut(s) 28, 300, 520
Van91I CCANNNNNTGG 1 cut(s) 585
XagI CCTNNNNNAGG 1 cut(s) 693
XapI RAATTY 1 cut(s) 44
XspI CTAG 2 cut(s) 354, 392
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.