Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Reverse (-)

18321763 .. 18322713

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48097

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGATGGCGTTTTGTTCTACACATCTCTGTCCCTCATCTTCATCCTCTCAATCACTTTCAAATACTTTTTTCGAACAAAACAACACCGCCACACGAACCTCCCACCAAGCCCACCTTCTCTTCCAGTTCTTGGCCATCTCCATCTCCTAAGCCCCTCACTTCATCGAACCTTCCACCAACTCTCACAGAAGTATGGCCCCGTTGTTTCCCTCTGGTTTGGCTCACGTCGCGTGGTTGTAGTGTCTTCATCCTCAACAGCTCAAGAATGTTTCACCCAAAACGATCTTGTTCTGGCAAACCGTCCTCGCTTCATGCTCACAGGCAAGCACCTAGGCTACAACTACACCACCGTAGTGGAGTCTCCTTATGGCGATCACTGGCGCAACCTACGCCGCATTGGAACCACAGAGATCTACTCTACCAGTAGGCTCAACATTTTTTCAGGCATCAGAAAGGATGAGGTCAAGAAATTGCTGTTCAAACTTTCACGCAGCTCACGTGAAGATTTTGCAAAGGTGGACTTGAGATCCATGCTCTCTGAGATGACCTTCAACATCATAATGACAATGGTGGCAGGGAAGAGGTTTTACGGGGACGATGTTTCGGACAAAGATGAGTCCAAACAGTTCAGAGATATCATGAGGGAGGCTTTCACATATGGTGGCGTAACAAACCCCTCAGACTTTCTGCCTGCTTTGAAATGGTTTGGGAGTGGCGCCGGGTTTGAGAAGAAGGTGATGGACTTGAGTAAGAGGATGAATGCGTTCTTGCAAGGTTTGATCGATGAGCAGCAGCTGAGTAAAACTACATCAGGTCAGAGTGAAGCAAGTACGATGATCCACCATTTACTTTCTCTGCAAGAATCAGAGCCGGAATACTACACCGACCAAATTATCAAAGGGCATATACTGGTTAGTACAATTATTCAATCTCTGCATCAAGATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

316

Amino Acids

36.14

Weight (kDa)

9.35

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	35 - 301	2.8e-27	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	716
AccB7I	CCANNNNNTGG	1 cut(s)	131
AccII	CGCG	1 cut(s)	231
AciI	CCGC	2 cut(s)	88, 394
AclWI	GGATC	2 cut(s)	522, 832
AcoI	YGGCCR	1 cut(s)	133
AcvI	CACGTG	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	717
AfaI	GTAC	2 cut(s)	832, 919
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	5 cut(s)	61, 481, 553, 700, 929
AjiI	CACGTC	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	3 cut(s)	260, 495, 796
AluI	AGCT	3 cut(s)	260, 495, 796
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	2 cut(s)	522, 832
AlwNI	CAGNNNCTG	1 cut(s)	796
AoxI	GGCC	2 cut(s)	133, 196
ApeKI	GCWGC	3 cut(s)	492, 790, 793
Asp700I	GAANNNNTTC	1 cut(s)	764
AspA2I	CCTAGG	1 cut(s)	331
AspLEI	GCGC	2 cut(s)	384, 719
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	721
AsuHPI	GGTGA	2 cut(s)	265, 748
AsuII	TTCGAA	1 cut(s)	73
AvrII	CCTAGG	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	716
BarI	GAAGNNNNNNTAC	2 cut(s)	572, 604
BbrPI	CACGTG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	504, 802, 805
BccI	CCATC	3 cut(s)	144, 150, 733
BcnI	CCSGG	1 cut(s)	721
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	720
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	4 cut(s)	394, 493, 791, 794
BlnI	CCTAGG	1 cut(s)	331
BlsI	GCNGC	4 cut(s)	395, 494, 792, 795
Bme1390I	CCNGG	1 cut(s)	721
BmgBI	CACGTC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	3 cut(s)	199, 403, 718
BmrFI	CCNGG	1 cut(s)	721
BmsI	GCATC	2 cut(s)	456, 946
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
Bpu10I	CCTNAGC	1 cut(s)	149
Bpu14I	TTCGAA	1 cut(s)	73
BpuEI	CTTGAG	3 cut(s)	246, 544, 766
BpuMI	CCSGG	1 cut(s)	721
Bsa29I	ATCGAT	1 cut(s)	783
BsaAI	YACGTR	1 cut(s)	500
BsaHI	GRCGYC	1 cut(s)	717
BsaJI	CCNNGG	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	4 cut(s)	125, 383, 423, 915
BseCI	ATCGAT	1 cut(s)	783
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	5 cut(s)	10, 42, 248, 463, 762
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	3 cut(s)	531, 693, 788
BseNI	ACTGG	4 cut(s)	125, 383, 423, 915
BseXI	GCAGC	3 cut(s)	504, 802, 805
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	135, 198
BshNI	GGYRCC	1 cut(s)	716
BshVI	ATCGAT	1 cut(s)	783
BsiSI	CCGG	2 cut(s)	720, 872
BslFI	GGGAC	2 cut(s)	16, 608
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	2 cut(s)	16, 608
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	135, 198
Bsp119I	TTCGAA	1 cut(s)	73
Bsp143I	GATC	6 cut(s)	283, 373, 411, 527, 780, 837
BspACI	CCGC	2 cut(s)	88, 394
BspANI	GGCC	2 cut(s)	135, 198
BspCNI	CTCAG	3 cut(s)	532, 692, 789
BspDI	ATCGAT	1 cut(s)	783
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	3 cut(s)	199, 403, 718
BspPI	GGATC	2 cut(s)	522, 832
BspT104I	TTCGAA	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	716
BsrI	ACTGG	4 cut(s)	125, 383, 423, 915
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	6 cut(s)	283, 373, 411, 527, 780, 837
BssNI	GRCGYC	1 cut(s)	717
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	3 cut(s)	302, 352, 627
Bst6I	CTCTTC	2 cut(s)	126, 575
BstACI	GRCGYC	1 cut(s)	717
BstBAI	YACGTR	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	326, 693
BstDEI	CTNAG	4 cut(s)	149, 540, 679, 797
BstF5I	GGATG	5 cut(s)	10, 42, 248, 463, 762
BstFNI	CGCG	1 cut(s)	231
BstH2I	RGCGCY	1 cut(s)	720
BstHHI	GCGC	2 cut(s)	384, 719
BstKTI	GATC	6 cut(s)	286, 376, 414, 530, 783, 840
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	6 cut(s)	283, 373, 411, 527, 780, 837
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 390
BstSCI	CCNGG	1 cut(s)	719
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	504, 802, 805
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	411, 527
BstXI	CCANNNNNNTGG	1 cut(s)	355
BstYI	RGATCY	2 cut(s)	411, 527
Bsu15I	ATCGAT	1 cut(s)	783
BsuRI	GGCC	2 cut(s)	135, 198
BsuTUI	ATCGAT	1 cut(s)	783
BtrI	CACGTC	1 cut(s)	227
BtsCI	GGATG	5 cut(s)	10, 42, 248, 463, 762
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	326, 693
CaiI	CAGNNNCTG	1 cut(s)	796
CciI	TCATGA	1 cut(s)	639
CfoI	GCGC	2 cut(s)	384, 719
Cfr13I	GGNCC	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	783
Csp6I	GTAC	2 cut(s)	831, 918
CviAII	CATG	3 cut(s)	313, 532, 640
CviQI	GTAC	2 cut(s)	831, 918
DdeI	CTNAG	4 cut(s)	149, 540, 679, 797
DinI	GGCGCC	1 cut(s)	718
DpnI	GATC	6 cut(s)	285, 375, 413, 529, 782, 839
DpnII	GATC	6 cut(s)	283, 373, 411, 527, 780, 837
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	126, 575
EarI	CTCTTC	2 cut(s)	126, 575
Eco130I	CCWWGG	1 cut(s)	331
Eco32I	GATATC	1 cut(s)	637
Eco72I	CACGTG	1 cut(s)	500
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	331
EgeI	GGCGCC	1 cut(s)	718
EheI	GGCGCC	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	3 cut(s)	316, 535, 643
FalI	AAGNNNNNCTT	4 cut(s)	100, 132, 506, 538
FaqI	GGGAC	2 cut(s)	16, 608
FatI	CATG	3 cut(s)	312, 531, 639
FauNDI	CATATG	1 cut(s)	658
Fnu4HI	GCNGC	4 cut(s)	394, 493, 791, 794
FokI	GGATG	5 cut(s)	17, 29, 235, 470, 769
Fsp4HI	GCNGC	4 cut(s)	394, 493, 791, 794
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	2 cut(s)	383, 718
GluI	GCNGC	4 cut(s)	394, 493, 791, 794
HaeII	RGCGCY	1 cut(s)	720
HaeIII	GGCC	2 cut(s)	135, 198
HapII	CCGG	2 cut(s)	720, 872
HhaI	GCGC	2 cut(s)	384, 719
Hin1I	GRCGYC	1 cut(s)	717
Hin1II	CATG	3 cut(s)	316, 535, 643
Hin6I	GCGC	2 cut(s)	382, 717
HinP1I	GCGC	2 cut(s)	382, 717
HinfI	GANTC	3 cut(s)	359, 617, 863
HpaII	CCGG	2 cut(s)	720, 872
HphI	GGTGA	2 cut(s)	265, 748
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	7 cut(s)	452, 541, 607, 632, 682, 819, 868
Hpy188III	TCNNGA	4 cut(s)	263, 466, 640, 941
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	4 cut(s)	126, 181, 559, 727
HpyCH4III	ACNGT	3 cut(s)	302, 352, 627
HpyCH4IV	ACGT	2 cut(s)	226, 499
HpyCH4V	TGCA	4 cut(s)	512, 772, 859, 937
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 390
HpyF3I	CTNAG	4 cut(s)	149, 540, 679, 797
HpySE526I	ACGT	2 cut(s)	226, 499
Hsp92I	GRCGYC	1 cut(s)	717
Hsp92II	CATG	3 cut(s)	316, 535, 643
HspAI	GCGC	2 cut(s)	382, 717
KasI	GGCGCC	1 cut(s)	716
Kzo9I	GATC	6 cut(s)	283, 373, 411, 527, 780, 837
Lsp1109I	GCAGC	3 cut(s)	504, 802, 805
LweI	GCATC	2 cut(s)	456, 946
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	226, 499
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	6 cut(s)	285, 375, 413, 529, 782, 839
MboI	GATC	6 cut(s)	283, 373, 411, 527, 780, 837
MboII	GAAGA	6 cut(s)	31, 113, 237, 515, 592, 742
MflI	RGATCY	2 cut(s)	411, 527
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	3 cut(s)	470, 891, 921
MluNI	TGGCCA	1 cut(s)	135
Mly113I	GGCGCC	1 cut(s)	717
MlyI	GAGTC	2 cut(s)	368, 626
Mox20I	TGGCCA	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	764
MscI	TGGCCA	1 cut(s)	135
MslI	CAYNNNNRTG	2 cut(s)	353, 560
Msp20I	TGGCCA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	796
MspI	CCGG	2 cut(s)	720, 872
MspR9I	CCNGG	1 cut(s)	721
Mva1269I	GAATGC	1 cut(s)	766
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	228, 390
NarI	GGCGCC	1 cut(s)	717
NciI	CCSGG	1 cut(s)	721
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	6 cut(s)	283, 373, 411, 527, 780, 837
NlaIII	CATG	3 cut(s)	316, 535, 643
NlaIV	GGNNCC	3 cut(s)	199, 403, 718
NspV	TTCGAA	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	353
PagI	TCATGA	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	764
PfeI	GAWTC	1 cut(s)	863
PflMI	CCANNNNNTGG	1 cut(s)	131
PkrI	GCNGC	4 cut(s)	395, 494, 792, 795
PleI	GAGTC	2 cut(s)	367, 625
PluTI	GGCGCC	1 cut(s)	720
PmaCI	CACGTG	1 cut(s)	500
PmlI	CACGTG	1 cut(s)	500
PpsI	GAGTC	2 cut(s)	367, 625
Ppu21I	YACGTR	1 cut(s)	500
PspCI	CACGTG	1 cut(s)	500
PspN4I	GGNNCC	3 cut(s)	199, 403, 718
PspPI	GGNCC	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	2 cut(s)	411, 527
PvuII	CAGCTG	1 cut(s)	796
RsaI	GTAC	2 cut(s)	832, 919
RsaNI	GTAC	2 cut(s)	831, 918
RseI	CAYNNNNRTG	2 cut(s)	353, 560
SatI	GCNGC	4 cut(s)	394, 493, 791, 794
Sau3AI	GATC	6 cut(s)	283, 373, 411, 527, 780, 837
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	2 cut(s)	368, 626
ScrFI	CCNGG	1 cut(s)	721
SfaNI	GCATC	2 cut(s)	456, 946
SfoI	GGCGCC	1 cut(s)	718
SfuI	TTCGAA	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	353, 560
SmlI	CTYRAG	3 cut(s)	261, 523, 745
SmoI	CTYRAG	3 cut(s)	261, 523, 745
Sse9I	AATT	3 cut(s)	470, 891, 921
SsiI	CCGC	2 cut(s)	88, 394
SspDI	GGCGCC	1 cut(s)	716
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	719
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	3 cut(s)	302, 352, 627
TaiI	ACGT	2 cut(s)	229, 502
TaqI	TCGA	3 cut(s)	73, 166, 783
TasI	AATT	3 cut(s)	470, 891, 921
TatI	WGTACW	1 cut(s)	917
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	863
TscAI	CASTG	1 cut(s)	383
TseI	GCWGC	3 cut(s)	492, 790, 793
TspDTI	ATGAA	5 cut(s)	31, 152, 237, 301, 773
TspRI	CASTG	1 cut(s)	383
Van91I	CCANNNNNTGG	1 cut(s)	131
XmaJI	CCTAGG	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.