MD08G1089700.v1.1

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000218
Physical Location & Seq
Reverse (-)
7420537 .. 7421154
618 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1089700.v1.1.491

Sequence Viewer

Length: 618 bp
ATGCTATCAGCAGGGACAGAAACCTCAGCTGGAACAACGGAATGGGCTCTGTCACTCTTGCTCAACAACCCTGAAACCCTAGCCAAAGCCCGAACTGAAATCGACATCCAAATCGGAGAAAGCAGGCTGATTGAGGAGTCAGACTTTCCCAAGCTTCCCTACCTCCAGGGCATCATCAACGAGACCCTGCGGATGTACCCAGCAGACCCATTGTTGGTGCCCCACGAATCATCGGAGGAGTGCGCTGTGGGAGGGTTCCGTGTTCCACGTGGCGCAATGCTGTTGGTGAACACGTGGGCTATACAGAACAATCCCAAGCTGTGGGCACAGCCTAGGCAATTTAAGCCCGAGAGGTTTTTGAACGGTGGGGAAAGAGATGGTTTTGTGTTGTTGCCATTCGGGACCGGGAGGAGGGGGTGTCCTGGGGAAGGACTAGCAATAAGGATGGTTGGGCTGGCATTAGGGTCTTTGCTTCAGTGTTTTGAGTGGGAGAGAAGTGGTGAGGAAATGGTGGACATGAGTGAAGGGACTGGCCTCACCATGCCTAAAGCTCACCCTTTACTTGCAAAGTGTAGGCCACGCCCAACAAAGTTTGCCCTGCTATCTCAACTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

206

Amino Acids

22.62

Weight (kDa)

5.55

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 184 4.3e-58 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 217
AccB7I CCANNNNNTGG 1 cut(s) 321
AciI CCGC 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 458
AcvI CACGTG 2 cut(s) 269, 294
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 4 cut(s) 214, 321, 411, 428
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 2 cut(s) 361, 614
AjnI CCWGG 2 cut(s) 165, 421
AluBI AGCT 4 cut(s) 29, 154, 319, 551
AluI AGCT 4 cut(s) 29, 154, 319, 551
Alw26I GTCTC 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 2 cut(s) 532, 575
AspA2I CCTAGG 1 cut(s) 332
AspLEI GCGC 2 cut(s) 245, 275
AspS9I GGNCC 1 cut(s) 402
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 4 cut(s) 298, 512, 529, 545
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 1 cut(s) 402
AvrII CCTAGG 1 cut(s) 332
BaeGI GKGCMC 2 cut(s) 222, 328
BanI GGYRCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 49
BbrPI CACGTG 2 cut(s) 269, 294
BbvCI CCTCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 371, 439
BciT130I CCWGG 2 cut(s) 167, 423
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 3 cut(s) 80, 333, 434
BlnI CCTAGG 1 cut(s) 332
Bme1390I CCNGG 3 cut(s) 167, 406, 423
Bme18I GGWCC 1 cut(s) 402
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 3 cut(s) 219, 257, 403
BmrFI CCNGG 3 cut(s) 167, 406, 423
BmsI GCATC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 406
BsaAI YACGTR 2 cut(s) 269, 294
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 166, 332, 422
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 321, 411, 428
Bse1I ACTGG 1 cut(s) 535
Bse3DI GCAATG 1 cut(s) 282
BseBI CCWGG 2 cut(s) 167, 423
BseDI CCNNGG 3 cut(s) 166, 332, 422
BseGI GGATG 3 cut(s) 105, 198, 450
BseLI CCNNNNNNNGG 4 cut(s) 214, 321, 411, 428
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 535
BseRI GAGGAG 3 cut(s) 149, 251, 424
BseSI GKGCMC 2 cut(s) 222, 328
BseYI CCCAGC 1 cut(s) 199
BshFI GGCC 2 cut(s) 534, 577
BshNI GGYRCC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 3 cut(s) 28, 415, 541
BslI CCNNNNNNNGG 4 cut(s) 214, 321, 411, 428
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 3 cut(s) 28, 415, 541
BsnI GGCC 2 cut(s) 534, 577
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 3 cut(s) 49, 222, 328
BspACI CCGC 1 cut(s) 190
BspANI GGCC 2 cut(s) 534, 577
BspCNI CTCAG 1 cut(s) 38
BspLI GGNNCC 3 cut(s) 219, 257, 403
BspT107I GGYRCC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 1 cut(s) 535
BssECI CCNNGG 3 cut(s) 166, 332, 422
BssT1I CCWWGG 1 cut(s) 332
Bst2UI CCWGG 2 cut(s) 167, 423
Bst4CI ACNGT 1 cut(s) 365
BstBAI YACGTR 2 cut(s) 269, 294
BstC8I GCNNGC 2 cut(s) 125, 456
BstDEI CTNAG 1 cut(s) 25
BstENI CCTNNNNNAGG 1 cut(s) 426
BstF5I GGATG 3 cut(s) 105, 198, 450
BstHHI GCGC 2 cut(s) 245, 275
BstMAI GTCTC 1 cut(s) 176
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstNI CCWGG 2 cut(s) 167, 423
BstSCI CCNGG 3 cut(s) 165, 404, 421
BstSLI GKGCMC 2 cut(s) 222, 328
BsuRI GGCC 2 cut(s) 534, 577
BtsCI GGATG 3 cut(s) 105, 198, 450
BtsIMutI CAGTG 1 cut(s) 482
Cac8I GCNNGC 2 cut(s) 125, 456
CfoI GCGC 2 cut(s) 245, 275
Cfr13I GGNCC 1 cut(s) 402
Csp6I GTAC 1 cut(s) 196
CviAII CATG 2 cut(s) 517, 541
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 402
Eco57I CTGAAG 1 cut(s) 458
Eco72I CACGTG 2 cut(s) 269, 294
Eco88I CYCGRG 1 cut(s) 347
EcoNI CCTNNNNNAGG 1 cut(s) 426
EcoRII CCWGG 2 cut(s) 165, 421
EcoT14I CCWWGG 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 2 cut(s) 520, 544
FaiI YATR 3 cut(s) 302, 518, 542
FaqI GGGAC 3 cut(s) 28, 415, 541
FatI CATG 2 cut(s) 516, 540
FokI GGATG 3 cut(s) 92, 205, 457
FriOI GRGCYC 1 cut(s) 49
FspBI CTAG 3 cut(s) 80, 333, 434
GlaI GCGC 2 cut(s) 244, 274
GsaI CCCAGC 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 2 cut(s) 534, 577
HapII CCGG 1 cut(s) 405
HhaI GCGC 2 cut(s) 245, 275
Hin1II CATG 2 cut(s) 520, 544
Hin6I GCGC 2 cut(s) 243, 273
HinP1I GCGC 2 cut(s) 243, 273
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 2 cut(s) 137, 227
HpaII CCGG 1 cut(s) 405
HphI GGTGA 4 cut(s) 298, 512, 529, 545
Hpy166II GTNNAC 2 cut(s) 289, 514
Hpy188I TCNGA 3 cut(s) 116, 142, 235
Hpy188III TCNNGA 1 cut(s) 400
Hpy8I GTNNAC 2 cut(s) 289, 514
HpyAV CCTTC 2 cut(s) 422, 518
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 2 cut(s) 268, 293
HpyCH4V TGCA 1 cut(s) 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 2 cut(s) 268, 293
Hsp92II CATG 2 cut(s) 520, 544
HspAI GCGC 2 cut(s) 243, 273
LweI GCATC 1 cut(s) 180
MaeI CTAG 3 cut(s) 80, 333, 434
MaeII ACGT 2 cut(s) 268, 293
MaeIII GTNAC 1 cut(s) 51
MhlI GDGCHC 3 cut(s) 49, 222, 328
MluCI AATT 1 cut(s) 338
MlyI GAGTC 1 cut(s) 146
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 3 cut(s) 167, 406, 423
MvaI CCWGG 2 cut(s) 167, 423
MwoI GCNNNNNNNGC 1 cut(s) 343
NciI CCSGG 1 cut(s) 406
NlaIII CATG 2 cut(s) 520, 544
NlaIV GGNNCC 3 cut(s) 219, 257, 403
NmuCI GTSAC 1 cut(s) 51
PfeI GAWTC 1 cut(s) 227
PflMI CCANNNNNTGG 1 cut(s) 321
PleI GAGTC 1 cut(s) 145
PmaCI CACGTG 2 cut(s) 269, 294
PmlI CACGTG 2 cut(s) 269, 294
PpsI GAGTC 1 cut(s) 145
Ppu21I YACGTR 2 cut(s) 269, 294
Psp6I CCWGG 2 cut(s) 165, 421
PspCI CACGTG 2 cut(s) 269, 294
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 2 cut(s) 165, 421
PspN4I GGNNCC 3 cut(s) 219, 257, 403
PspPI GGNCC 1 cut(s) 402
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 342
Sau96I GGNCC 1 cut(s) 402
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 3 cut(s) 167, 406, 423
SduI GDGCHC 3 cut(s) 49, 222, 328
SetI ASST 9 cut(s) 26, 31, 156, 165, 271, 296, 321, 356, 553
SfaNI GCATC 1 cut(s) 180
SinI GGWCC 1 cut(s) 402
Sse9I AATT 1 cut(s) 338
SsiI CCGC 1 cut(s) 190
SspMI CTAG 3 cut(s) 80, 333, 434
StyD4I CCNGG 3 cut(s) 165, 404, 421
StyI CCWWGG 1 cut(s) 332
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 2 cut(s) 271, 296
TaqI TCGA 1 cut(s) 102
TasI AATT 1 cut(s) 338
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 482
TseFI GTSAC 1 cut(s) 51
Tsp45I GTSAC 1 cut(s) 51
TspGWI ACGGA 2 cut(s) 53, 248
TspRI CASTG 1 cut(s) 482
Van91I CCANNNNNTGG 1 cut(s) 321
VpaK11BI GGWCC 1 cut(s) 402
XagI CCTNNNNNAGG 1 cut(s) 426
XmaJI CCTAGG 1 cut(s) 332
XspI CTAG 3 cut(s) 80, 333, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.