Rh2DG286200

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000218
Physical Location & Seq
Reverse (-)
33098123 .. 33101320
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG286200.1

Sequence Viewer

Length: 1078 bp
ATGGAACCCATCTTCTTCTACTCATCTCTCTCCATCATCGTCTGCGTGTTCATCTCTCTAAAGCTGTTTGGACGGTGTCGTTACCCCAACCTCCCTCCAAGCCCTTCCTTATCTCTTCCGATACTCGGCCACCTCCATCTTCTTAAACCCCCAATCCACCGCACCTTCCACCGCCTCTCGCAGAAACATGGCCCCATCATCTCCCTCTGGTTCGGCTCCCGCCGCGTGGTCATTATCTCCTCCCCCTCGGCTGTGCAAGAATGCTTCACCAAAAACGACATCGTGTTGGCGAACCGTCCCCCCACACTATTAAGCAAGCACTTTGGGTACAATCAAACCACCTTGGTGGCCGCCCCCTACGGCGATCACTGGCGCAACGTTCGCCGTATCGGCACTGTCGAGGTCTTGTCTGCCGGCCGGCTCAACTCGTTCTCCGAAATCAGAAAAGTCGAAGTGAATCATTTGCTGCGCAAGCTTTCCCGACATGCAGAAGAAGAAGAAGAAGGTCGTTTTGTGAAAGTGGAGCTGAGGTCTATGTTGTTTGAGCTGACCTTCAACAACATAATGACCATGGTGGCGGGGAAGAGGTATGTCGGGAACCATGTTGCGAACAAGGAAGAGGGGAAGGAATTCATTGAGATCATGGATGAAGCTTTATCGTACAGTGGGGGAACCAACCCCGGAGAATTCATGCCCTTTTTGAAATGTTTTGGCGGTAATGGTTATGAGAGGAAGTTGAAGAAGTTGGGCAGGAGAGCAGATTTGTTCTTGCAGCGTCTAATTGATGAGCACCGGAACAAGAGTGCTTCGGAGAGTAAAAACACCATGATTGACCATTTGCTTTCTCAGCAGGAGTCACAACCTGGGTATTATACTGATGAGATTATCAAAGGACTTATACTGAGTCTATTATTGGCTGGCACTGATACATCGGCTGTGACAATAGAATGGGCTATGTCTAATTTGCTAAACCATCCGGATGCCTTGGAGAAGGCTAGAGCTGAACTGGATGCTCAACTTGGTCAAGAACGCATAGTAGACGAACCAGACATCTCCAAACTTCACTACCTACAAATAG

Protein Analysis

359

Amino Acids

40.79

Weight (kDa)

8.75

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 33 - 358 8.2e-52 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 470
AccI GTMKAC 1 cut(s) 1038
AccII CGCG 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 976
AciI CCGC 7 cut(s) 160, 172, 220, 223, 351, 578, 714
AclI AACGTT 1 cut(s) 378
AcoI YGGCCR 3 cut(s) 127, 348, 415
AcsI RAATTY 2 cut(s) 629, 686
AfaI GTAC 2 cut(s) 329, 662
AfiI CCNNNNNNNGG 2 cut(s) 125, 226
AgsI TTSAA 3 cut(s) 556, 703, 739
AjnI CCWGG 1 cut(s) 862
AleI CACNNNNGTG 1 cut(s) 344
AluBI AGCT 6 cut(s) 64, 475, 526, 547, 653, 1001
AluI AGCT 6 cut(s) 64, 475, 526, 547, 653, 1001
Alw21I GWGCWC 1 cut(s) 792
Aor13HI TCCGGA 1 cut(s) 976
AoxI GGCC 4 cut(s) 127, 190, 348, 415
ApeKI GCWGC 2 cut(s) 466, 772
ApoI RAATTY 2 cut(s) 629, 686
Asp700I GAANNNNTTC 1 cut(s) 629
AspLEI GCGC 2 cut(s) 375, 471
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 681
AsuHPI GGTGA 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 792
BbvCI CCTCAGC 1 cut(s) 527
BbvI GCAGC 2 cut(s) 453, 784
BccI CCATC 5 cut(s) 17, 41, 144, 203, 981
BceAI ACGGC 2 cut(s) 369, 376
BciT130I CCWGG 1 cut(s) 864
BcnI CCSGG 1 cut(s) 681
BfaI CTAG 1 cut(s) 996
BglI GCCNNNNNGGC 1 cut(s) 390
BisI GCNGC 4 cut(s) 223, 351, 467, 773
BlsI GCNGC 4 cut(s) 224, 352, 468, 774
Bme1390I CCNGG 2 cut(s) 681, 864
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 5 cut(s) 6, 193, 217, 599, 673
BmrFI CCNGG 2 cut(s) 681, 864
BmsI GCATC 2 cut(s) 970, 1000
Bpu10I CCTNAGC 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 681
BsaJI CCNNGG 6 cut(s) 246, 342, 570, 679, 863, 984
BsaWI WCCGGW 2 cut(s) 792, 976
BsaXI ACNNNNNCTCC 4 cut(s) 416, 446, 515, 545
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 226
Bse118I RCCGGY 2 cut(s) 413, 417
Bse1I ACTGG 2 cut(s) 374, 1011
BseAI TCCGGA 1 cut(s) 976
BseBI CCWGG 1 cut(s) 864
BseDI CCNNGG 6 cut(s) 246, 342, 570, 679, 863, 984
BseGI GGATG 4 cut(s) 652, 973, 985, 1015
BseLI CCNNNNNNNGG 2 cut(s) 125, 226
BseMII CTCAG 3 cut(s) 518, 860, 893
BseNI ACTGG 2 cut(s) 374, 1011
BseRI GAGGAG 1 cut(s) 229
BseX3I CGGCCG 1 cut(s) 415
BseXI GCAGC 2 cut(s) 453, 784
Bsh1236I CGCG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 4 cut(s) 129, 192, 350, 417
BsiEI CGRYCG 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 792
BsiSI CCGG 5 cut(s) 414, 418, 681, 793, 977
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 2 cut(s) 125, 226
BsmFI GGGAC 1 cut(s) 282
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 4 cut(s) 129, 192, 350, 417
Bsp1286I GDGCHC 1 cut(s) 792
Bsp13I TCCGGA 1 cut(s) 976
Bsp143I GATC 2 cut(s) 364, 639
Bsp19I CCATGG 1 cut(s) 570
BspACI CCGC 7 cut(s) 160, 172, 220, 223, 351, 578, 714
BspANI GGCC 4 cut(s) 129, 192, 350, 417
BspCNI CTCAG 3 cut(s) 519, 859, 894
BspEI TCCGGA 1 cut(s) 976
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 5 cut(s) 6, 193, 217, 599, 673
BsrFI RCCGGY 2 cut(s) 413, 417
BsrI ACTGG 2 cut(s) 374, 1011
BssAI RCCGGY 2 cut(s) 413, 417
BssECI CCNNGG 6 cut(s) 246, 342, 570, 679, 863, 984
BssMI GATC 2 cut(s) 364, 639
BssT1I CCWWGG 3 cut(s) 342, 570, 984
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 4 cut(s) 75, 296, 397, 665
Bst6I CTCTTC 3 cut(s) 120, 578, 612
BstC8I GCNNGC 5 cut(s) 317, 415, 419, 473, 919
BstDEI CTNAG 3 cut(s) 527, 846, 902
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 4 cut(s) 652, 973, 985, 1015
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 2 cut(s) 375, 471
BstKTI GATC 2 cut(s) 367, 642
BstMBI GATC 2 cut(s) 364, 639
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 5 cut(s) 222, 381, 390, 472, 847
BstNI CCWGG 1 cut(s) 864
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 679, 862
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 453, 784
BstXI CCANNNNNNTGG 1 cut(s) 346
BstZI CGGCCG 1 cut(s) 415
BsuRI GGCC 4 cut(s) 129, 192, 350, 417
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 4 cut(s) 652, 973, 985, 1015
BtsIMutI CAGTG 4 cut(s) 367, 393, 670, 921
Cac8I GCNNGC 5 cut(s) 317, 415, 419, 473, 919
CfoI GCGC 2 cut(s) 375, 471
Cfr10I RCCGGY 2 cut(s) 413, 417
Cfr13I GGNCC 1 cut(s) 191
CseI GACGC 1 cut(s) 764
Csp6I GTAC 2 cut(s) 328, 661
CviAII CATG 7 cut(s) 188, 485, 571, 602, 643, 691, 826
CviQI GTAC 2 cut(s) 328, 661
DdeI CTNAG 3 cut(s) 527, 846, 902
DpnI GATC 2 cut(s) 366, 641
DpnII GATC 2 cut(s) 364, 639
EaeI YGGCCR 3 cut(s) 127, 348, 415
EagI CGGCCG 1 cut(s) 415
Eam1104I CTCTTC 3 cut(s) 120, 578, 612
EarI CTCTTC 3 cut(s) 120, 578, 612
EclXI CGGCCG 1 cut(s) 415
Eco130I CCWWGG 3 cut(s) 342, 570, 984
Eco52I CGGCCG 1 cut(s) 415
EcoRI GAATTC 2 cut(s) 629, 686
EcoRII CCWGG 1 cut(s) 862
EcoT14I CCWWGG 3 cut(s) 342, 570, 984
ErhI CCWWGG 3 cut(s) 342, 570, 984
FaeI CATG 7 cut(s) 191, 488, 574, 605, 646, 694, 829
FaqI GGGAC 1 cut(s) 282
FatI CATG 7 cut(s) 187, 484, 570, 601, 642, 690, 825
FauI CCCGC 2 cut(s) 227, 571
FblI GTMKAC 1 cut(s) 1038
Fnu4HI GCNGC 4 cut(s) 223, 351, 467, 773
FokI GGATG 4 cut(s) 659, 960, 992, 1022
Fsp4HI GCNGC 4 cut(s) 223, 351, 467, 773
FspBI CTAG 1 cut(s) 996
FspI TGCGCA 1 cut(s) 470
GlaI GCGC 2 cut(s) 374, 470
GluI GCNGC 4 cut(s) 223, 351, 467, 773
HaeIII GGCC 4 cut(s) 129, 192, 350, 417
HapII CCGG 5 cut(s) 414, 418, 681, 793, 977
HgaI GACGC 1 cut(s) 764
HhaI GCGC 2 cut(s) 375, 471
Hin1II CATG 7 cut(s) 191, 488, 574, 605, 646, 694, 829
Hin6I GCGC 2 cut(s) 373, 469
HinP1I GCGC 2 cut(s) 373, 469
HindIII AAGCTT 2 cut(s) 473, 651
HinfI GANTC 3 cut(s) 457, 854, 904
HpaII CCGG 5 cut(s) 414, 418, 681, 793, 977
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 1039
Hpy188I TCNGA 4 cut(s) 120, 436, 443, 811
Hpy188III TCNNGA 4 cut(s) 480, 595, 977, 1025
Hpy8I GTNNAC 1 cut(s) 1039
HpyAV CCTTC 6 cut(s) 114, 175, 497, 562, 619, 985
HpyCH4III ACNGT 4 cut(s) 75, 296, 397, 665
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 3 cut(s) 256, 488, 772
HpyF10VI GCNNNNNNNGC 5 cut(s) 222, 381, 390, 472, 847
HpyF3I CTNAG 3 cut(s) 527, 846, 902
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 7 cut(s) 191, 488, 574, 605, 646, 694, 829
HspAI GCGC 2 cut(s) 373, 469
Kpn2I TCCGGA 1 cut(s) 976
KroI GCCGGC 2 cut(s) 413, 417
KroNI GCCGGC 2 cut(s) 415, 419
Kzo9I GATC 2 cut(s) 364, 639
LmnI GCTCC 2 cut(s) 221, 523
Lsp1109I GCAGC 2 cut(s) 453, 784
LweI GCATC 2 cut(s) 970, 1000
MaeI CTAG 1 cut(s) 996
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 3 cut(s) 80, 855, 937
MalI GATC 2 cut(s) 366, 641
MboI GATC 2 cut(s) 364, 639
MhlI GDGCHC 1 cut(s) 792
MluCI AATT 4 cut(s) 629, 686, 780, 961
MlyI GAGTC 2 cut(s) 863, 913
MroI TCCGGA 1 cut(s) 976
MroNI GCCGGC 2 cut(s) 413, 417
MroXI GAANNNNTTC 1 cut(s) 629
MseI TTAA 2 cut(s) 144, 311
MslI CAYNNNNRTG 2 cut(s) 344, 978
MspI CCGG 5 cut(s) 414, 418, 681, 793, 977
MspR9I CCNGG 2 cut(s) 681, 864
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 1 cut(s) 864
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 5 cut(s) 222, 381, 390, 472, 847
NaeI GCCGGC 2 cut(s) 415, 419
NciI CCSGG 1 cut(s) 681
NcoI CCATGG 1 cut(s) 570
NdeII GATC 2 cut(s) 364, 639
NgoMIV GCCGGC 2 cut(s) 413, 417
NlaIII CATG 7 cut(s) 191, 488, 574, 605, 646, 694, 829
NlaIV GGNNCC 5 cut(s) 6, 193, 217, 599, 673
NmeAIII GCCGAG 2 cut(s) 105, 227
NmuCI GTSAC 2 cut(s) 855, 937
NsbI TGCGCA 1 cut(s) 470
NspI RCATGY 1 cut(s) 488
OliI CACNNNNGTG 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 1 cut(s) 266
PdiI GCCGGC 2 cut(s) 415, 419
PdmI GAANNNNTTC 1 cut(s) 629
PfeI GAWTC 1 cut(s) 457
PflFI GACNNNGTC 1 cut(s) 75
PkrI GCNGC 4 cut(s) 224, 352, 468, 774
PleI GAGTC 2 cut(s) 862, 912
PpsI GAGTC 2 cut(s) 862, 912
Psp1406I AACGTT 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 862
PspGI CCWGG 1 cut(s) 862
PspN4I GGNNCC 5 cut(s) 6, 193, 217, 599, 673
PspPI GGNCC 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 75
RsaI GTAC 2 cut(s) 329, 662
RsaNI GTAC 2 cut(s) 328, 661
RseI CAYNNNNRTG 2 cut(s) 344, 978
SaqAI TTAA 2 cut(s) 144, 311
SatI GCNGC 4 cut(s) 223, 351, 467, 773
Sau3AI GATC 2 cut(s) 364, 639
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 2 cut(s) 863, 913
ScrFI CCNGG 2 cut(s) 681, 864
SduI GDGCHC 1 cut(s) 792
SfaNI GCATC 2 cut(s) 970, 1000
SmiMI CAYNNNNRTG 2 cut(s) 344, 978
Sse9I AATT 4 cut(s) 629, 686, 780, 961
SsiI CCGC 7 cut(s) 160, 172, 220, 223, 351, 578, 714
SspMI CTAG 1 cut(s) 996
StyD4I CCNGG 2 cut(s) 679, 862
StyI CCWWGG 3 cut(s) 342, 570, 984
TaaI ACNGT 4 cut(s) 75, 296, 397, 665
TaiI ACGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 399, 450
TasI AATT 4 cut(s) 629, 686, 780, 961
TauI GCSGC 2 cut(s) 225, 353
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 2 cut(s) 144, 311
Tru9I TTAA 2 cut(s) 144, 311
TscAI CASTG 4 cut(s) 374, 400, 670, 928
TseFI GTSAC 2 cut(s) 855, 937
TseI GCWGC 2 cut(s) 466, 772
Tsp45I GTSAC 2 cut(s) 855, 937
TspDTI ATGAA 4 cut(s) 40, 622, 663, 679
TspRI CASTG 4 cut(s) 374, 400, 670, 928
Tth111I GACNNNGTC 1 cut(s) 75
XapI RAATTY 2 cut(s) 629, 686
XceI RCATGY 1 cut(s) 488
XmiI GTMKAC 1 cut(s) 1038
XmnI GAANNNNTTC 1 cut(s) 629
XspI CTAG 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.