Rh2BG291000

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000218
Physical Location & Seq
Reverse (-)
32480833 .. 32515551
34719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG291000.1

Sequence Viewer

Length: 1050 bp
ATGGAAGACATCTTCTTCTACACTTCTGTCTCCATCATCGTGTGCCTGCTGATCACTCTAAAGCTGTTTGAACGGCGACGTTACCCCAACCTCCCTCCAAGTCCTTCCTTATCTCTTCCGATTCTCAATCACCTCCACCTTCTCAAATCCCCGGTCCACCGCACCTTCCACCGCCTCTCCCAGAAATGCGGCCCCATCTTCTCCCTCTGGTTCGGCTCCCGCCGCGTGGTCATTATCTCCTCCTCCTCCGCCGTGCAAGAATGCTTCACCAAAAATGACATCGTCTTGGCAAACCGTCCCCCCACGCTCCTGAGTAAGCACTTTGCGTACAACAGCACCACCATTACGACCTCCCCCTACGGCGATCAATGGCGAAACGTTCGGCGTATCGGCACTGTCGAGGTCTTGTCCACCAGCCGGCTCAACTCTTTCTCAGATGTCAGAAAAGAAGAAGTAAAGCACTTGCTGCGCAAGCTTTTTCTAAACGCAGAAGAAGAAGAAGGTTGTTTTGTGAAAGTGGTGCTGAGGTCTATGTTATATGAGCTGACCTTCAACAACATAATGACAATGATGGCGGGGAAGAGGTATGTCGGGGACCATGTTGCGAACAAGAAAGAGGGGTTGGAGTTCATTGAGATCATGGATGAGGCGTTTTCGTACAGCTTGGGAACCAACCCCGGAGAATTCATGCCCTTTTTCAGATGGTTTGGTGGTAATGGTTATGAGAGGAAGGTGAAGAAGTTGGGTAAGAGAGCAGATATGTTCTTGCAACGTCTGATTGATGAGCACAGGAACAAGACTGCATCAGAGAGTAAAAATACCTTGATCGACCACATGCTTTCTCTGCAGGGGTCAGAACCTGAATATTACACTGATGAGATCTGTTTGAGCCCAAAAATAGACTTTGATTCTTGTGACTGCGAGTCTGTGAGGATTTTGGATACTTCAGCTCTGGATCCCGAGGCACATTTCATGGACCACTGCCTACTTGAAATCTTATTGTACAGGTGCGTTAATTGTCTGATCAAGTTTTATGGATTGTGCCCATGA

Protein Analysis

349

Amino Acids

40.3

Weight (kDa)

7.96

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 291 2.2e-27 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 470
AccII CGCG 1 cut(s) 225
AciI CCGC 7 cut(s) 160, 172, 189, 220, 223, 249, 575
AclI AACGTT 1 cut(s) 378
AclWI GGATC 2 cut(s) 950, 963
AcsI RAATTY 1 cut(s) 683
AcuI CTGAAG 1 cut(s) 930
AfaI GTAC 3 cut(s) 329, 659, 1004
AfiI CCNNNNNNNGG 2 cut(s) 226, 417
AgsI TTSAA 3 cut(s) 71, 553, 992
AhdI GACNNNNNGTC 1 cut(s) 922
AjuI GAANNNNNNNTTGG 2 cut(s) 605, 637
AluBI AGCT 5 cut(s) 64, 475, 544, 663, 950
AluI AGCT 5 cut(s) 64, 475, 544, 663, 950
Alw21I GWGCWC 1 cut(s) 789
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 2 cut(s) 950, 963
AlwNI CAGNNNCTG 1 cut(s) 860
Ama87I CYCGRG 1 cut(s) 959
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 466
ApoI RAATTY 1 cut(s) 683
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 4 cut(s) 154, 191, 595, 976
AsuC2I CCSGG 2 cut(s) 152, 678
AsuHPI GGTGA 3 cut(s) 122, 259, 745
AvaI CYCGRG 1 cut(s) 959
AvaII GGWCC 3 cut(s) 154, 595, 976
BaeGI GKGCMC 1 cut(s) 1046
BamHI GGATCC 1 cut(s) 955
BanII GRGCYC 1 cut(s) 893
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 789
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 1 cut(s) 453
BccI CCATC 4 cut(s) 41, 203, 565, 696
BceAI ACGGC 3 cut(s) 89, 236, 376
BciVI GTATCC 1 cut(s) 934
BclI TGATCA 2 cut(s) 51, 1023
BcnI CCSGG 2 cut(s) 152, 678
BcoDI GTCTC 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 845
BfuI GTATCC 1 cut(s) 934
BglII AGATCT 1 cut(s) 879
BisI GCNGC 3 cut(s) 190, 223, 467
BlsI GCNGC 3 cut(s) 191, 224, 468
Bme1390I CCNGG 2 cut(s) 152, 678
Bme18I GGWCC 3 cut(s) 154, 595, 976
BmeRI GACNNNNNGTC 1 cut(s) 922
BmeT110I CYCGRG 1 cut(s) 959
BmgT120I GGNCC 4 cut(s) 154, 191, 595, 976
BmiI GGNNCC 5 cut(s) 193, 217, 596, 670, 957
BmrFI CCNGG 2 cut(s) 152, 678
BmsI GCATC 1 cut(s) 812
BpiI GAAGAC 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 524
BpuMI CCSGG 2 cut(s) 152, 678
BsaJI CCNNGG 3 cut(s) 150, 676, 960
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 417
Bse118I RCCGGY 1 cut(s) 417
BseDI CCNNGG 3 cut(s) 150, 676, 960
BseGI GGATG 1 cut(s) 649
BseLI CCNNNNNNNGG 2 cut(s) 226, 417
BseMII CTCAG 3 cut(s) 302, 447, 515
BseRI GAGGAG 3 cut(s) 229, 232, 235
BseSI GKGCMC 1 cut(s) 1046
BseXI GCAGC 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 789
BsiHKCI CYCGRG 1 cut(s) 959
BsiSI CCGG 3 cut(s) 152, 418, 678
BslFI GGGAC 2 cut(s) 282, 608
BslI CCNNNNNNNGG 2 cut(s) 226, 417
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 282, 608
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 959
Bsp1286I GDGCHC 3 cut(s) 789, 893, 1046
Bsp1407I TGTACA 1 cut(s) 1002
Bsp143I GATC 7 cut(s) 51, 364, 636, 825, 879, 955, 1023
BspACI CCGC 7 cut(s) 160, 172, 189, 220, 223, 249, 575
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 3 cut(s) 303, 446, 516
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 5 cut(s) 193, 217, 596, 670, 957
BspMAI CTGCAG 1 cut(s) 849
BspPI GGATC 2 cut(s) 950, 963
BsrFI RCCGGY 1 cut(s) 417
BsrGI TGTACA 1 cut(s) 1002
BssAI RCCGGY 1 cut(s) 417
BssECI CCNNGG 3 cut(s) 150, 676, 960
BssMI GATC 7 cut(s) 51, 364, 636, 825, 879, 955, 1023
Bst4CI ACNGT 2 cut(s) 296, 397
Bst6I CTCTTC 2 cut(s) 120, 575
BstAPI GCANNNNNTGC 1 cut(s) 466
BstAUI TGTACA 1 cut(s) 1002
BstC8I GCNNGC 3 cut(s) 47, 419, 473
BstDEI CTNAG 3 cut(s) 311, 433, 524
BstF5I GGATG 1 cut(s) 649
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 7 cut(s) 54, 367, 639, 828, 882, 958, 1026
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 7 cut(s) 51, 364, 636, 825, 879, 955, 1023
BstMWI GCNNNNNNNGC 4 cut(s) 222, 466, 472, 844
BstNSI RCATGY 1 cut(s) 838
BstSCI CCNGG 2 cut(s) 150, 676
BstSFI CTRYAG 1 cut(s) 845
BstSLI GKGCMC 1 cut(s) 1046
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 453
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 879, 955
BstYI RGATCY 2 cut(s) 879, 955
BsuI GTATCC 1 cut(s) 934
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 649
BtsI GCAGTG 1 cut(s) 979
BtsIMutI CAGTG 3 cut(s) 393, 870, 979
Cac8I GCNNGC 3 cut(s) 47, 419, 473
CaiI CAGNNNCTG 1 cut(s) 860
CfoI GCGC 1 cut(s) 471
Cfr10I RCCGGY 1 cut(s) 417
Cfr13I GGNCC 4 cut(s) 154, 191, 595, 976
Csp6I GTAC 3 cut(s) 328, 658, 1003
CviAII CATG 6 cut(s) 599, 640, 688, 835, 973, 1047
CviQI GTAC 3 cut(s) 328, 658, 1003
DdeI CTNAG 3 cut(s) 311, 433, 524
DpnI GATC 7 cut(s) 53, 366, 638, 827, 881, 957, 1025
DpnII GATC 7 cut(s) 51, 364, 636, 825, 879, 955, 1023
DriI GACNNNNNGTC 1 cut(s) 922
Eam1104I CTCTTC 2 cut(s) 120, 575
Eam1105I GACNNNNNGTC 1 cut(s) 922
EarI CTCTTC 2 cut(s) 120, 575
EciI GGCGGA 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 893
Eco47I GGWCC 3 cut(s) 154, 595, 976
Eco57I CTGAAG 1 cut(s) 930
Eco88I CYCGRG 1 cut(s) 959
EcoRI GAATTC 1 cut(s) 683
EcoT38I GRGCYC 1 cut(s) 893
FaeI CATG 6 cut(s) 602, 643, 691, 838, 976, 1050
FaqI GGGAC 2 cut(s) 282, 608
FatI CATG 6 cut(s) 598, 639, 687, 834, 972, 1046
FauI CCCGC 2 cut(s) 227, 568
FbaI TGATCA 2 cut(s) 51, 1023
Fnu4HI GCNGC 3 cut(s) 190, 223, 467
FokI GGATG 1 cut(s) 656
FriOI GRGCYC 1 cut(s) 893
Fsp4HI GCNGC 3 cut(s) 190, 223, 467
FspI TGCGCA 1 cut(s) 470
GlaI GCGC 1 cut(s) 470
GluI GCNGC 3 cut(s) 190, 223, 467
HaeIII GGCC 1 cut(s) 192
HapII CCGG 3 cut(s) 152, 418, 678
HhaI GCGC 1 cut(s) 471
Hin1II CATG 6 cut(s) 602, 643, 691, 838, 976, 1050
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 3 cut(s) 121, 908, 923
HpaII CCGG 3 cut(s) 152, 418, 678
HphI GGTGA 3 cut(s) 122, 259, 745
Hpy166II GTNNAC 2 cut(s) 157, 411
Hpy188I TCNGA 8 cut(s) 120, 436, 443, 701, 777, 808, 856, 1023
Hpy188III TCNNGA 3 cut(s) 310, 953, 959
Hpy8I GTNNAC 2 cut(s) 157, 411
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 6 cut(s) 114, 149, 175, 494, 559, 724
HpyCH4III ACNGT 2 cut(s) 296, 397
HpyCH4IV ACGT 3 cut(s) 79, 378, 772
HpyCH4V TGCA 4 cut(s) 256, 769, 803, 847
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 466, 472, 844
HpyF3I CTNAG 3 cut(s) 311, 433, 524
HpySE526I ACGT 3 cut(s) 79, 378, 772
Hsp92II CATG 6 cut(s) 602, 643, 691, 838, 976, 1050
HspAI GCGC 1 cut(s) 469
KroI GCCGGC 1 cut(s) 417
KroNI GCCGGC 1 cut(s) 419
Ksp22I TGATCA 2 cut(s) 51, 1023
Kzo9I GATC 7 cut(s) 51, 364, 636, 825, 879, 955, 1023
LmnI GCTCC 2 cut(s) 221, 312
Lsp1109I GCAGC 1 cut(s) 453
LweI GCATC 1 cut(s) 812
MaeII ACGT 3 cut(s) 79, 378, 772
MaeIII GTNAC 2 cut(s) 80, 914
MalI GATC 7 cut(s) 53, 366, 638, 827, 881, 957, 1025
MboI GATC 7 cut(s) 51, 364, 636, 825, 879, 955, 1023
MflI RGATCY 2 cut(s) 879, 955
MhlI GDGCHC 3 cut(s) 789, 893, 1046
MluCI AATT 2 cut(s) 683, 1015
MlyI GAGTC 1 cut(s) 932
MmeI TCCRAC 1 cut(s) 603
MroNI GCCGGC 1 cut(s) 417
MseI TTAA 1 cut(s) 1014
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 3 cut(s) 152, 418, 678
MspR9I CCNGG 2 cut(s) 152, 678
Mva1269I GAATGC 1 cut(s) 266
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 4 cut(s) 222, 466, 472, 844
NaeI GCCGGC 1 cut(s) 419
NciI CCSGG 2 cut(s) 152, 678
NdeII GATC 7 cut(s) 51, 364, 636, 825, 879, 955, 1023
NgoMIV GCCGGC 1 cut(s) 417
NlaIII CATG 6 cut(s) 602, 643, 691, 838, 976, 1050
NlaIV GGNNCC 5 cut(s) 193, 217, 596, 670, 957
NmuCI GTSAC 1 cut(s) 914
NsbI TGCGCA 1 cut(s) 470
NspI RCATGY 1 cut(s) 838
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 1 cut(s) 266
PdiI GCCGGC 1 cut(s) 419
PfeI GAWTC 2 cut(s) 121, 908
PflFI GACNNNGTC 1 cut(s) 281
PkrI GCNGC 3 cut(s) 191, 224, 468
PleI GAGTC 1 cut(s) 931
PpsI GAGTC 1 cut(s) 931
Psp1406I AACGTT 1 cut(s) 378
PspN4I GGNNCC 5 cut(s) 193, 217, 596, 670, 957
PspPI GGNCC 4 cut(s) 154, 191, 595, 976
PstI CTGCAG 1 cut(s) 849
PstNI CAGNNNCTG 1 cut(s) 860
PsuI RGATCY 2 cut(s) 879, 955
PsyI GACNNNGTC 1 cut(s) 281
RsaI GTAC 3 cut(s) 329, 659, 1004
RsaNI GTAC 3 cut(s) 328, 658, 1003
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 1014
SatI GCNGC 3 cut(s) 190, 223, 467
Sau3AI GATC 7 cut(s) 51, 364, 636, 825, 879, 955, 1023
Sau96I GGNCC 4 cut(s) 154, 191, 595, 976
SchI GAGTC 1 cut(s) 932
ScrFI CCNGG 2 cut(s) 152, 678
SduI GDGCHC 3 cut(s) 789, 893, 1046
SfaNI GCATC 1 cut(s) 812
SfcI CTRYAG 1 cut(s) 845
SinI GGWCC 3 cut(s) 154, 595, 976
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 2 cut(s) 683, 1015
SsiI CCGC 7 cut(s) 160, 172, 189, 220, 223, 249, 575
SspI AATATT 1 cut(s) 866
StyD4I CCNGG 2 cut(s) 150, 676
TaaI ACNGT 2 cut(s) 296, 397
TaiI ACGT 3 cut(s) 82, 381, 775
TaqI TCGA 2 cut(s) 399, 828
TasI AATT 2 cut(s) 683, 1015
TatI WGTACW 1 cut(s) 1002
TauI GCSGC 2 cut(s) 192, 225
TfiI GAWTC 2 cut(s) 121, 908
Tru1I TTAA 1 cut(s) 1014
Tru9I TTAA 1 cut(s) 1014
TscAI CASTG 3 cut(s) 400, 877, 986
TseFI GTSAC 1 cut(s) 914
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 914
TspDTI ATGAA 3 cut(s) 619, 676, 961
TspRI CASTG 3 cut(s) 400, 877, 986
Tth111I GACNNNGTC 1 cut(s) 281
VpaK11BI GGWCC 3 cut(s) 154, 595, 976
XapI RAATTY 1 cut(s) 683
XceI RCATGY 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.