Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Reverse (-)

33027705 .. 33063942

Gene Structure 36238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG286000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAAGACATCTTCTTCTACACTTCTGTCTCCATCATCGTGTGCCTGCTGATCACTCTAAAGCTGTTTGAACGGCGACGTTACCCCAACCTCCCTCCAAGTCCTTCCTTATCTCTTCCGATTCTCAATCACCTCCACCTTCTCAAATCCCCGGTCCACCGCACCTTCCACCGCCTCTCCCAGAAATGCGGCCCCATCTTCTCCCTCTGGTTCGGCTCCCGCCGCGTGGTCATTATCTCCTCCTCCTCCGCCGTGCAAGAATGCTTCACCAAAAATGACATCGTCTTGGCAAACCGTCCCCCCACGCTCCTGAGTAAGCACTTTGCGTACAACAGCACCACCATTACGACCTCCCCCTACGGCGATCAATGGCGAAACGTTCGGCGTATCGGCACTGTCGAGGTCTTGTCCACCAGCCGGCTCAACTCTTTCTCAGATGTCAGAAAAGAAGAACCAAAGAGAGAGGTGGAGGTTGGTTATGATCCTGAGCTTGAATCCTATCCACCCTGGCTACTCTCTCAGCCCTATTCACGACTTTTACCTTATGTTAGAGCTCCTGGAACTTCAATCGGTCATTTGAAAGAGGACATTAGATCGGATTTTGGTACAATTTTCTTGCAATTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

209

Amino Acids

23.98

Weight (kDa)

9.48

Isoelectric Point (pI)

61.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	32 - 151	2.5e-14	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AciI	CCGC	6 cut(s)	160, 172, 189, 220, 223, 249
AclI	AACGTT	1 cut(s)	378
AclWI	GGATC	1 cut(s)	476
AfaI	GTAC	2 cut(s)	329, 607
AfiI	CCNNNNNNNGG	2 cut(s)	226, 417
AgsI	TTSAA	4 cut(s)	71, 494, 567, 580
AjnI	CCWGG	2 cut(s)	506, 556
AluBI	AGCT	3 cut(s)	64, 490, 554
AluI	AGCT	3 cut(s)	64, 490, 554
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	476
AoxI	GGCC	1 cut(s)	190
ArsI	GACNNNNNNTTYG	2 cut(s)	138, 170
AspS9I	GGNCC	2 cut(s)	154, 191
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	122, 259
AvaII	GGWCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	556
BccI	CCATC	2 cut(s)	41, 203
BceAI	ACGGC	3 cut(s)	89, 236, 376
BciT130I	CCWGG	2 cut(s)	508, 558
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	34
BisI	GCNGC	2 cut(s)	190, 223
BlsI	GCNGC	2 cut(s)	191, 224
Bme1390I	CCNGG	3 cut(s)	152, 508, 558
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	2 cut(s)	154, 191
BmiI	GGNNCC	2 cut(s)	193, 217
BmrFI	CCNGG	3 cut(s)	152, 508, 558
BpiI	GAAGAC	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	150, 506
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 417
Bse118I	RCCGGY	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	508, 558
BseDI	CCNNGG	2 cut(s)	150, 506
BseLI	CCNNNNNNNGG	2 cut(s)	226, 417
BseMII	CTCAG	4 cut(s)	302, 447, 477, 533
BseRI	GAGGAG	3 cut(s)	229, 232, 235
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	152, 418
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	2 cut(s)	226, 417
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	4 cut(s)	51, 364, 481, 593
BspACI	CCGC	6 cut(s)	160, 172, 189, 220, 223, 249
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	4 cut(s)	303, 446, 478, 532
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	193, 217
BspPI	GGATC	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	417
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	2 cut(s)	150, 506
BssMI	GATC	4 cut(s)	51, 364, 481, 593
Bst2UI	CCWGG	2 cut(s)	508, 558
Bst4CI	ACNGT	2 cut(s)	296, 397
Bst6I	CTCTTC	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	47, 419
BstDEI	CTNAG	4 cut(s)	311, 433, 486, 519
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	4 cut(s)	54, 367, 484, 596
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	4 cut(s)	51, 364, 481, 593
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	2 cut(s)	508, 558
BstSCI	CCNGG	3 cut(s)	150, 506, 556
BstUI	CGCG	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	2 cut(s)	47, 419
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	154, 191
Csp6I	GTAC	2 cut(s)	328, 606
CviJI	RGCY	9 cut(s)	64, 192, 216, 417, 421, 490, 511, 523, 554
CviKI_1	RGCY	9 cut(s)	64, 192, 216, 417, 421, 490, 511, 523, 554
CviQI	GTAC	2 cut(s)	328, 606
DdeI	CTNAG	4 cut(s)	311, 433, 486, 519
DpnI	GATC	4 cut(s)	53, 366, 483, 595
DpnII	GATC	4 cut(s)	51, 364, 481, 593
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	506, 556
EcoT38I	GRGCYC	1 cut(s)	556
FaiI	YATR	3 cut(s)	480, 546, 628
FaqI	GGGAC	1 cut(s)	282
FauI	CCCGC	1 cut(s)	227
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	190, 223
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	2 cut(s)	190, 223
GluI	GCNGC	2 cut(s)	190, 223
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	2 cut(s)	152, 418
HinfI	GANTC	2 cut(s)	121, 494
HpaII	CCGG	2 cut(s)	152, 418
HphI	GGTGA	2 cut(s)	122, 259
Hpy166II	GTNNAC	2 cut(s)	157, 411
Hpy188I	TCNGA	4 cut(s)	120, 436, 443, 598
Hpy188III	TCNNGA	3 cut(s)	310, 485, 531
Hpy8I	GTNNAC	2 cut(s)	157, 411
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	3 cut(s)	114, 149, 175
HpyCH4III	ACNGT	2 cut(s)	296, 397
HpyCH4IV	ACGT	2 cut(s)	79, 378
HpyCH4V	TGCA	2 cut(s)	256, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	4 cut(s)	311, 433, 486, 519
HpySE526I	ACGT	2 cut(s)	79, 378
KroI	GCCGGC	1 cut(s)	417
KroNI	GCCGGC	1 cut(s)	419
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	51, 364, 481, 593
LmnI	GCTCC	3 cut(s)	221, 312, 559
MaeII	ACGT	2 cut(s)	79, 378
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	4 cut(s)	53, 366, 483, 595
MboI	GATC	4 cut(s)	51, 364, 481, 593
MboII	GAAGA	6 cut(s)	4, 7, 17, 107, 190, 461
MfeI	CAATTG	1 cut(s)	620
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	2 cut(s)	609, 620
MroNI	GCCGGC	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	2 cut(s)	152, 418
MspR9I	CCNGG	3 cut(s)	152, 508, 558
MunI	CAATTG	1 cut(s)	620
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	2 cut(s)	508, 558
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	222
NaeI	GCCGGC	1 cut(s)	419
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	51, 364, 481, 593
NgoMIV	GCCGGC	1 cut(s)	417
NlaIV	GGNNCC	2 cut(s)	193, 217
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PctI	GAATGC	1 cut(s)	266
PdiI	GCCGGC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	121, 494
PflFI	GACNNNGTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	2 cut(s)	191, 224
Psp124BI	GAGCTC	1 cut(s)	556
Psp1406I	AACGTT	1 cut(s)	378
Psp6I	CCWGG	2 cut(s)	506, 556
PspGI	CCWGG	2 cut(s)	506, 556
PspN4I	GGNNCC	2 cut(s)	193, 217
PspPI	GGNCC	2 cut(s)	154, 191
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	2 cut(s)	329, 607
RsaNI	GTAC	2 cut(s)	328, 606
RseI	CAYNNNNRTG	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	556
SatI	GCNGC	2 cut(s)	190, 223
Sau3AI	GATC	4 cut(s)	51, 364, 481, 593
Sau96I	GGNCC	2 cut(s)	154, 191
ScrFI	CCNGG	3 cut(s)	152, 508, 558
SduI	GDGCHC	1 cut(s)	556
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	609, 620
SsiI	CCGC	6 cut(s)	160, 172, 189, 220, 223, 249
SstI	GAGCTC	1 cut(s)	556
StyD4I	CCNGG	3 cut(s)	150, 506, 556
TaaI	ACNGT	2 cut(s)	296, 397
TaiI	ACGT	2 cut(s)	82, 381
TaqI	TCGA	1 cut(s)	399
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	2 cut(s)	609, 620
TauI	GCSGC	2 cut(s)	192, 225
TfiI	GAWTC	2 cut(s)	121, 494
TscAI	CASTG	1 cut(s)	400
TspRI	CASTG	1 cut(s)	400
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.