Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000218

Physical Location & Seq

Genomic Coordinates Forward (+)

12278008 .. 12282549

Gene Structure 4542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0139300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTTCCAGCATCATTGTTGAGCTGATTAATTTGCCTAATGGCGACATAGTGCTTGAACAGGAAAACTATAATTCTGACCTCGAAACCACTGTTGACCGATTGAGCAAGTGGCTTGTACCTGGACTTTTTGCTGTTGGAATACTATGTAGGCATGATGCAGAAGCTATGCGGGCTGCCGTGGGGTATTTGGCGAATACTATGCTCGCTATCATGATCAAACGAATACTGACTCAACTCACTCAAGAGAGACGTGCAGCCTCTGGTGTATCTGAGCTTGGAGTGCCGTCTTTGCATGCGCAATCTATCTTCTACATTGTTATATTTGCCATTTCTTCAGTTGTGCATTCTCTAGGGATAACTGTGATCACGCTGACCATGAGTGGATTTGCAATGGCATTTAGCTCATATCTTTCATGGATACCAGTCTCACATCGACTTCATACTCTGAGCCAAGTGATTGTGGGTGGTACCCTTGGGACCATTTTCTCCATTCTATGGTACTGGTCATGGAATGTCGCTGTGCACGAACCATATGTATTTCGACTTCTGGGTTCAAATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

188

Amino Acids

20.71

Weight (kDa)

6.28

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca	FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica	MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica	Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis	pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis	RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata	RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora	Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa	Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha	Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana	Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	300
Acc65I	GGTACC	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	470
AccB7I	CCANNNNNTGG	1 cut(s)	498
AciI	CCGC	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	120, 472, 503
AfiI	CCNNNNNNNGG	1 cut(s)	498
AgsI	TTSAA	2 cut(s)	59, 558
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	4 cut(s)	25, 167, 277, 405
AluI	AGCT	4 cut(s)	25, 167, 277, 405
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	2 cut(s)	244, 433
Alw44I	GTGCAC	1 cut(s)	524
AlwNI	CAGNNNCTG	1 cut(s)	263
ApaLI	GTGCAC	1 cut(s)	524
ApeKI	GCWGC	2 cut(s)	176, 257
AseI	ATTAAT	1 cut(s)	30
Asp718I	GGTACC	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	480
AvaII	GGWCC	1 cut(s)	480
BaeGI	GKGCMC	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	470
BarI	GAAGNNNNNNTAC	2 cut(s)	531, 563
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	2 cut(s)	163, 269
BceAI	ACGGC	2 cut(s)	164, 271
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	123
BciVI	GTATCC	1 cut(s)	414
BclI	TGATCA	2 cut(s)	216, 366
BcoDI	GTCTC	2 cut(s)	244, 433
BfaI	CTAG	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	414
BisI	GCNGC	2 cut(s)	177, 258
BlsI	GCNGC	2 cut(s)	178, 259
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	480
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	2 cut(s)	472, 481
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	21, 148
BpuEI	CTTGAG	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	180, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse1I	ACTGG	2 cut(s)	425, 509
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	180, 475
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	264, 440
BseNI	ACTGG	2 cut(s)	425, 509
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	2 cut(s)	163, 269
BsgI	GTGCAG	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	1 cut(s)	498
BsmAI	GTCTC	2 cut(s)	244, 433
BsmBI	CGTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	2 cut(s)	216, 366
BspACI	CCGC	1 cut(s)	172
BspCNI	CTCAG	2 cut(s)	265, 441
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	472, 481
BspT107I	GGYRCC	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	425, 509
BssECI	CCNNGG	2 cut(s)	180, 475
BssMI	GATC	2 cut(s)	216, 366
BssT1I	CCWWGG	1 cut(s)	475
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	94, 364
BstC8I	GCNNGC	3 cut(s)	174, 207, 297
BstDEI	CTNAG	2 cut(s)	273, 449
BstDSI	CCRYGG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	2 cut(s)	219, 369
BstMAI	GTCTC	2 cut(s)	244, 433
BstMBI	GATC	2 cut(s)	216, 366
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 283, 292
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	163, 269
BsuI	GTATCC	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	3 cut(s)	174, 207, 297
CaiI	CAGNNNCTG	1 cut(s)	263
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	480
Csp6I	GTAC	3 cut(s)	119, 471, 502
CviAII	CATG	6 cut(s)	155, 214, 296, 379, 417, 510
CviJI	RGCY	9 cut(s)	5, 25, 115, 167, 176, 260, 277, 405, 453
CviKI_1	RGCY	9 cut(s)	5, 25, 115, 167, 176, 260, 277, 405, 453
CviQI	GTAC	3 cut(s)	119, 471, 502
DdeI	CTNAG	2 cut(s)	273, 449
DpnI	GATC	2 cut(s)	218, 368
DpnII	GATC	2 cut(s)	216, 366
Eco130I	CCWWGG	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	475
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	6 cut(s)	158, 217, 299, 382, 420, 513
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	6 cut(s)	154, 213, 295, 378, 416, 509
FauI	CCCGC	1 cut(s)	165
FauNDI	CATATG	1 cut(s)	535
FbaI	TGATCA	2 cut(s)	216, 366
Fnu4HI	GCNGC	2 cut(s)	177, 258
Fsp4HI	GCNGC	2 cut(s)	177, 258
FspBI	CTAG	1 cut(s)	353
FspI	TGCGCA	1 cut(s)	300
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	2 cut(s)	177, 258
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	6 cut(s)	158, 217, 299, 382, 420, 513
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	97, 526
Hpy188I	TCNGA	3 cut(s)	79, 274, 450
Hpy188III	TCNNGA	2 cut(s)	214, 245
Hpy8I	GTNNAC	2 cut(s)	97, 526
HpyCH4III	ACNGT	2 cut(s)	94, 364
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	6 cut(s)	161, 257, 295, 346, 392, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 283, 292
HpyF3I	CTNAG	2 cut(s)	273, 449
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	6 cut(s)	158, 217, 299, 382, 420, 513
HspAI	GCGC	1 cut(s)	299
KpnI	GGTACC	1 cut(s)	474
Ksp22I	TGATCA	2 cut(s)	216, 366
Kzo9I	GATC	2 cut(s)	216, 366
LpnPI	CCDG	8 cut(s)	22, 47, 108, 135, 249, 438, 490, 536
Lsp1109I	GCAGC	2 cut(s)	163, 269
LweI	GCATC	2 cut(s)	21, 148
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	253
MalI	GATC	2 cut(s)	218, 368
MboI	GATC	2 cut(s)	216, 366
MboII	GAAGA	2 cut(s)	301, 327
MhlI	GDGCHC	1 cut(s)	528
MluCI	AATT	2 cut(s)	31, 73
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	92, 271
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	173, 283, 292
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	2 cut(s)	216, 366
NlaIII	CATG	6 cut(s)	158, 217, 299, 382, 420, 513
NlaIV	GGNNCC	2 cut(s)	472, 481
NsbI	TGCGCA	1 cut(s)	300
NspI	RCATGY	1 cut(s)	299
PaeI	GCATGC	1 cut(s)	299
PagI	TCATGA	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PctI	GAATGC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	498
PkrI	GCNGC	2 cut(s)	178, 259
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	472, 481
PspPI	GGNCC	1 cut(s)	480
PstNI	CAGNNNCTG	1 cut(s)	263
RsaI	GTAC	3 cut(s)	120, 472, 503
RsaNI	GTAC	3 cut(s)	119, 471, 502
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	177, 258
Sau3AI	GATC	2 cut(s)	216, 366
Sau96I	GGNCC	1 cut(s)	480
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	528
SetI	ASST	7 cut(s)	27, 84, 124, 169, 256, 279, 407
SfaNI	GCATC	2 cut(s)	21, 148
SinI	GGWCC	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	2 cut(s)	31, 73
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	2 cut(s)	94, 364
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	3 cut(s)	84, 436, 544
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	31, 73
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	2 cut(s)	176, 257
TspDTI	ATGAA	2 cut(s)	405, 431
TspRI	CASTG	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	498
VneI	GTGCAC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	480
VspI	ATTAAT	1 cut(s)	30
XceI	RCATGY	1 cut(s)	299
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.