Rmu_sc0006098.1_g000002

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006098.1
Physical Location & Seq
Reverse (-)
459 .. 713
255 bp
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UTR
Exon/CDS
Intron
Rmu_sc0006098.1_g000002.1.cds

Sequence Viewer

Length: 255 bp
atgcttttggctggtactgattcatcatccatgacactggaatgggccatgttcaatctgctcaaccatcctgaggtgctaaaaagggctagagctgaactggatgctgaatttggacaagaacgcttactagacgaaccagatatcttcaaactaccttacctacaaagtatcatctccgagactctccaattgtaccctacagcgccactactagtaccacattatacatctgatgactgcaccattggatga

Protein Analysis

84

Amino Acids

9.5

Weight (kDa)

4.35

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 3 cut(s) 16, 197, 219
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 55, 151
AhlI ACTAGT 1 cut(s) 214
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 176
AoxI GGCC 1 cut(s) 45
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 45
AxyI CCTNAGG 1 cut(s) 72
BccI CCATC 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 176
BcuI ACTAGT 1 cut(s) 214
BfaI CTAG 3 cut(s) 90, 131, 215
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 45
BmsI GCATC 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 42, 105
Bse21I CCTNAGG 1 cut(s) 72
BseGI GGATG 3 cut(s) 26, 67, 109
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 2 cut(s) 42, 105
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 1 cut(s) 47
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 64
BsrI ACTGG 2 cut(s) 42, 105
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 3 cut(s) 26, 67, 109
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 176
BstSFI CTRYAG 1 cut(s) 201
BstXI CCANNNNNNTGG 1 cut(s) 37
Bsu36I CCTNAGG 1 cut(s) 72
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 3 cut(s) 26, 67, 109
BtsIMutI CAGTG 1 cut(s) 35
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 45
Csp6I GTAC 3 cut(s) 15, 196, 218
CviAII CATG 2 cut(s) 31, 49
CviJI RGCY 4 cut(s) 11, 47, 89, 95
CviKI_1 RGCY 4 cut(s) 11, 47, 89, 95
CviQI GTAC 3 cut(s) 15, 196, 218
DdeI CTNAG 1 cut(s) 72
Eco32I GATATC 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 72
EcoRV GATATC 1 cut(s) 145
FaeI CATG 2 cut(s) 34, 52
FaiI YATR 3 cut(s) 32, 50, 228
FatI CATG 2 cut(s) 30, 48
FokI GGATG 3 cut(s) 13, 54, 116
FspBI CTAG 3 cut(s) 90, 131, 215
GlaI GCGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 1 cut(s) 47
HhaI GCGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 34, 52
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 2 cut(s) 20, 184
Hpy188I TCNGA 2 cut(s) 181, 235
Hpy188III TCNNGA 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 243
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 2 cut(s) 34, 52
HspAI GCGC 1 cut(s) 206
LpnPI CCDG 4 cut(s) 23, 84, 86, 153
LweI GCATC 1 cut(s) 94
MaeI CTAG 3 cut(s) 90, 131, 215
MboII GAAGA 1 cut(s) 139
MfeI CAATTG 1 cut(s) 191
MluCI AATT 2 cut(s) 110, 191
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 1 cut(s) 67
MslI CAYNNNNRTG 1 cut(s) 40
MunI CAATTG 1 cut(s) 191
NlaIII CATG 2 cut(s) 34, 52
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 45
RsaI GTAC 3 cut(s) 16, 197, 219
RsaNI GTAC 3 cut(s) 15, 196, 218
RseI CAYNNNNRTG 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 1 cut(s) 178
SetI ASST 4 cut(s) 78, 97, 160, 165
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 40
SpeI ACTAGT 1 cut(s) 214
Sse9I AATT 2 cut(s) 110, 191
SspMI CTAG 3 cut(s) 90, 131, 215
TasI AATT 2 cut(s) 110, 191
TfiI GAWTC 1 cut(s) 20
TscAI CASTG 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 12
TspRI CASTG 1 cut(s) 42
XapI RAATTY 1 cut(s) 110
XspI CTAG 3 cut(s) 90, 131, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.