Rmu_sc0007106.1_g000009

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007106.1
OG0000218
Physical Location & Seq
Forward (+)
31172 .. 32459
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007106.1_g000009.1.cds

Sequence Viewer

Length: 672 bp
atgtcaaatcttcttaaccatcctcatgtgttgaaagaggctagagccgaattggactctcatctcggcttggatcacttggtggatgaacccgatgtctccaaattgccttacctacagagcattatttctgaaacccttcggctttatccaccgctgcttttggtgccgcatttatcgtccgatgattgcacgatcgggggattcgatgtgcctcgtgacacaatggtaatggttaatgtgtgggcaatacatagagatgctgagttgtgcgatgatccggaaagctttaagcccgagaggttcaaaaatggcgagcatgactcatacaaactcatgccatttggactgggaagaagggcttgccctggaatgagtctagcccaacgtgtggagattttcaacgtcgttatgatgatggtggctgggaagaggtacaacaaagaccacatgtcggatgacagagaggctaggcaatttaaggatatcatgaaggcgaaaatgttcccctggggaacgagactgatcatgaaggaggctttggagtatggtggggtggcgaatccttcagactttttgcctgttctgatttgggttggagggtattggattgagaagaaactgatcgagggagttgggggaacaagacagattagcaacggatccacttaa

Protein Analysis

223

Amino Acids

25.27

Weight (kDa)

5.9

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AccB7I CCANNNNNTGG 1 cut(s) 391
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 2 cut(s) 155, 170
AclWI GGATC 4 cut(s) 81, 272, 657, 670
AcuI CTGAAG 1 cut(s) 552
AdeI CACNNNGTG 1 cut(s) 82
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 2 cut(s) 391, 454
AflIII ACRYGT 2 cut(s) 388, 450
AgsI TTSAA 3 cut(s) 34, 307, 403
AhdI GACNNNNNGTC 1 cut(s) 451
AjnI CCWGG 2 cut(s) 367, 509
AjuI GAANNNNNNNTTGG 2 cut(s) 524, 556
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 103, 514
AlwI GGATC 4 cut(s) 81, 272, 657, 670
Ama87I CYCGRG 1 cut(s) 296
Aor13HI TCCGGA 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 157
Asp700I GAANNNNTTC 2 cut(s) 138, 503
AvaI CYCGRG 1 cut(s) 296
BamHI GGATCC 1 cut(s) 662
BanI GGYRCC 1 cut(s) 166
BauI CACGAG 1 cut(s) 216
BbvI GCAGC 1 cut(s) 144
BccI CCATC 2 cut(s) 27, 412
BciT130I CCWGG 2 cut(s) 369, 511
BclI TGATCA 1 cut(s) 525
BcoDI GTCTC 2 cut(s) 103, 514
BfaI CTAG 3 cut(s) 42, 380, 471
BfmI CTRYAG 1 cut(s) 116
BisI GCNGC 2 cut(s) 158, 170
BlsI GCNGC 2 cut(s) 159, 171
Bme1390I CCNGG 2 cut(s) 369, 511
BmeRI GACNNNNNGTC 1 cut(s) 451
BmeT110I CYCGRG 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 168, 664
BmrFI CCNGG 2 cut(s) 369, 511
BmrI ACTGGG 1 cut(s) 359
BmsI GCATC 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 359
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BsaJI CCNNGG 3 cut(s) 367, 509, 510
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 454
Bse1I ACTGG 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 2 cut(s) 369, 511
BseDI CCNNGG 3 cut(s) 367, 509, 510
BseGI GGATG 3 cut(s) 19, 91, 463
BseLI CCNNNNNNNGG 2 cut(s) 391, 454
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 354
BseXI GCAGC 1 cut(s) 144
BseYI CCCAGC 1 cut(s) 425
Bsh1285I CGRYCG 1 cut(s) 198
BshNI GGYRCC 1 cut(s) 166
BsiEI CGRYCG 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 391, 454
BsmAI GTCTC 2 cut(s) 103, 514
BsoBI CYCGRG 1 cut(s) 296
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 6 cut(s) 73, 195, 277, 525, 624, 662
BspACI CCGC 2 cut(s) 155, 170
BspCNI CTCAG 1 cut(s) 256
BspEI TCCGGA 1 cut(s) 280
BspHI TCATGA 2 cut(s) 489, 528
BspLI GGNNCC 2 cut(s) 168, 664
BspPI GGATC 4 cut(s) 81, 272, 657, 670
BspT107I GGYRCC 1 cut(s) 166
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 3 cut(s) 367, 509, 510
BssMI GATC 6 cut(s) 73, 195, 277, 525, 624, 662
BssSI CACGAG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 369, 511
Bst6I CTCTTC 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 317, 364
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 3 cut(s) 19, 91, 463
BstKTI GATC 6 cut(s) 76, 198, 280, 528, 627, 665
BstMAI GTCTC 2 cut(s) 103, 514
BstMBI GATC 6 cut(s) 73, 195, 277, 525, 624, 662
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 2 cut(s) 369, 511
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 2 cut(s) 367, 509
BstSFI CTRYAG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 662
BstYI RGATCY 1 cut(s) 662
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 3 cut(s) 19, 91, 463
Cac8I GCNNGC 2 cut(s) 317, 364
CciI TCATGA 2 cut(s) 489, 528
Csp6I GTAC 1 cut(s) 436
CviAII CATG 6 cut(s) 26, 320, 337, 451, 490, 529
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 264
DpnI GATC 6 cut(s) 75, 197, 279, 527, 626, 664
DpnII GATC 6 cut(s) 73, 195, 277, 525, 624, 662
DraIII CACNNNGTG 1 cut(s) 82
DriI GACNNNNNGTC 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 425
Eam1105I GACNNNNNGTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 425
Eco32I GATATC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 296
EcoRII CCWGG 2 cut(s) 367, 509
EcoRV GATATC 1 cut(s) 487
FaeI CATG 6 cut(s) 29, 323, 340, 454, 493, 532
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FatI CATG 6 cut(s) 25, 319, 336, 450, 489, 528
FbaI TGATCA 1 cut(s) 525
Fnu4HI GCNGC 2 cut(s) 158, 170
FokI GGATG 3 cut(s) 6, 98, 470
Fsp4HI GCNGC 2 cut(s) 158, 170
FspBI CTAG 3 cut(s) 42, 380, 471
GluI GCNGC 2 cut(s) 158, 170
GsaI CCCAGC 1 cut(s) 429
HapII CCGG 1 cut(s) 281
Hin1II CATG 6 cut(s) 29, 323, 340, 454, 493, 532
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 5 cut(s) 56, 204, 323, 376, 562
HpaII CCGG 1 cut(s) 281
Hpy188I TCNGA 5 cut(s) 133, 184, 457, 571, 588
Hpy188III TCNNGA 4 cut(s) 218, 281, 490, 529
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 5 cut(s) 149, 351, 487, 526, 576
HpyCH4IV ACGT 2 cut(s) 388, 405
HpyCH4V TGCA 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 2 cut(s) 388, 405
Hsp92II CATG 6 cut(s) 29, 323, 340, 454, 493, 532
Kpn2I TCCGGA 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 6 cut(s) 73, 195, 277, 525, 624, 662
LpnPI CCDG 8 cut(s) 294, 335, 354, 381, 411, 496, 523, 594
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 1 cut(s) 250
MaeI CTAG 3 cut(s) 42, 380, 471
MaeII ACGT 2 cut(s) 388, 405
MaeIII GTNAC 1 cut(s) 218
MalI GATC 6 cut(s) 75, 197, 279, 527, 626, 664
MboI GATC 6 cut(s) 73, 195, 277, 525, 624, 662
MboII GAAGA 3 cut(s) 366, 442, 628
MflI RGATCY 1 cut(s) 662
MluCI AATT 3 cut(s) 50, 104, 476
MlyI GAGTC 3 cut(s) 50, 317, 385
MmeI TCCRAC 2 cut(s) 435, 577
MnlI CCTC 9 cut(s) 31, 33, 225, 294, 426, 460, 529, 593, 622
MroI TCCGGA 1 cut(s) 280
MroXI GAANNNNTTC 2 cut(s) 138, 503
MseI TTAA 5 cut(s) 15, 237, 291, 480, 670
MslI CAYNNNNRTG 2 cut(s) 24, 258
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 369, 511
MvaI CCWGG 2 cut(s) 369, 511
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 6 cut(s) 73, 195, 277, 525, 624, 662
NlaIII CATG 6 cut(s) 29, 323, 340, 454, 493, 532
NlaIV GGNNCC 2 cut(s) 168, 664
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 218
NspI RCATGY 1 cut(s) 454
PagI TCATGA 2 cut(s) 489, 528
PasI CCCWGGG 1 cut(s) 510
PciI ACATGT 1 cut(s) 450
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdmI GAANNNNTTC 2 cut(s) 138, 503
PfeI GAWTC 2 cut(s) 204, 562
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 2 cut(s) 159, 171
Ple19I CGATCG 1 cut(s) 198
PleI GAGTC 3 cut(s) 50, 317, 384
PpsI GAGTC 3 cut(s) 50, 317, 384
PscI ACATGT 1 cut(s) 450
Psp6I CCWGG 2 cut(s) 367, 509
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 2 cut(s) 367, 509
PspN4I GGNNCC 2 cut(s) 168, 664
PsuI RGATCY 1 cut(s) 662
PvuI CGATCG 1 cut(s) 198
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 2 cut(s) 24, 258
SaqAI TTAA 5 cut(s) 15, 237, 291, 480, 670
SatI GCNGC 2 cut(s) 158, 170
Sau3AI GATC 6 cut(s) 73, 195, 277, 525, 624, 662
SchI GAGTC 3 cut(s) 50, 317, 385
ScrFI CCNGG 2 cut(s) 369, 511
SetI ASST 6 cut(s) 117, 290, 305, 391, 408, 437
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 116
SmiMI CAYNNNNRTG 2 cut(s) 24, 258
Sse9I AATT 3 cut(s) 50, 104, 476
SsiI CCGC 2 cut(s) 155, 170
SspMI CTAG 3 cut(s) 42, 380, 471
StyD4I CCNGG 2 cut(s) 367, 509
TaiI ACGT 2 cut(s) 391, 408
TaqI TCGA 2 cut(s) 207, 627
TasI AATT 3 cut(s) 50, 104, 476
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 2 cut(s) 204, 562
Tru1I TTAA 5 cut(s) 15, 237, 291, 480, 670
Tru9I TTAA 5 cut(s) 15, 237, 291, 480, 670
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 3 cut(s) 102, 506, 545
Van91I CCANNNNNTGG 1 cut(s) 391
XceI RCATGY 1 cut(s) 454
XmnI GAANNNNTTC 2 cut(s) 138, 503
XspI CTAG 3 cut(s) 42, 380, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.