Rorug02G0238400

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
24032636 .. 24033637
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0238400.1

Sequence Viewer

Length: 927 bp
ATGAGTCGATATGGTGGAAATGGGGTAACACTAGAGTGGTTGAGATTAAGATTTCAGAGTGTTTCAGATGATAGTTCTCTTGAATTTATTGAGTTCCCAGCAAGAGGATTCTTGCTATATATATTAGGTTGCACACTTTTTGTGGACAAGACTGGGAATAGGATAAATGTGATTTACCTACATTTTTTACGGGATCTTAATAGGGTTGGTCGGTATGCCTGGGGAGTTGCAGGGTTATCATTTTTATATCGACAGTTAGGACTTGCATCTAGAGTTGGTAGTAGGAAAATTGGGGGTTATTTGACATTGCTTGAGGCTTGGATATATGAGCACTTCCGGAATGTAGTTTCCCCTCATCTTCGTGTTGAATATTCAGAGAATGAGCCACGAGTGAATCATTGGGAACCTCTAAAAGATGCAGGTTTGTCACTAGTTTACGTGCAAGCTCTTCGCCAACAGCTTGATCATATGCAAGCACACGAGGTCATATGGGATCCATATCGTGGTCATAGGGATGCTCATCCATTATTGGAAATCACATTTTACACAGGAATGCTTAAGTGTTTAGATATTGTGGAACCATATTATCCTGATAGGGTTCTAAGACAACGTGGTCGAGTTCAAACAATTCCTTGCAACCCTTACACCCCATCTCGTGTTCGACGAGTTTCTGATTCCAAATCGTACAAGGTTGTGTATGAGTACTTTGATGGATTGTGGCAAAGATGGCGAGATCACGTGTTAGCAGATGCCAACCGAAGCACTCCAGTTAAGTTTTCATATGACTGCACTCCAGAATACTTATCGTGGTACCAAAAGATCACACATCCCTATGTTCAACACCCTGATCGGGTGTCTGCTGCAGTTGATTCAAATGAGGAAAATCATGAAGTCATGTCGGACAAATATAAGACTTTTCTCAAATGA

Protein Analysis

308

Amino Acids

36.27

Weight (kDa)

8.72

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 7 - 272 3.4e-45 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66540 AT1G66540 AT4G37340 AT4G37360 AT4G37370 AT5G36220 AT5G36220
fragaria_vesca FvH4_1g16862 FvH4_1g16870 FvH4_1g16871 FvH4_1g16920 FvH4_1g16921 FvH4_1g16930 FvH4_1g23681 FvH4_1g23710
malus_domestica MD03G1281500.v1.1 MD08G1089700.v1.1 MD15G1074700.v1.1 MD15G1289800.v1.1 MD15G1290300.v1.1
prunus_persica Prupe.6G226600_v2.0.a1 Prupe.6G226800_v2.0.a1 Prupe.6G226900_v2.0.a1 Prupe.6G227000_v2.0.a1 Prupe.6G227100_v2.0.a1 Prupe.6G227300_v2.0.a1 Prupe.6G227400_v2.0.a1
pyrus_communis pycom15g25350 pycom15g25360 pycom15g25370 pycom15g25400
rosa_chinensis RchiOBHm_Chr2g0106831 RchiOBHm_Chr2g0106851 RchiOBHm_Chr2g0106901 RchiOBHm_Chr2g0106911 RchiOBHm_Chr2g0106971 RchiOBHm_Chr2g0106991 RchiOBHm_Chr2g0119331 RchiOBHm_Chr2g0119351 RchiOBHm_Chr2g0119391 RchiOBHm_Chr2g0119411 RchiOBHm_Chr2g0119481 RchiOBHm_Chr2g0119541 RchiOBHm_Chr5g0076421
rosa_laevigata RLG00000012204 RLG00000017542 RLG00000017543 RLG00000017547 RLG00000017549 RLG00000018145 RLG00000018146 RLG00000018148 RLG00000018462 RLG00000018464 RLG00000018465 RLG00000018468 RLG00000018470 RLG00000018471 RLG00000018539 RLG00000018540 RLG00000018592
rosa_multiflora Rmu_co8030410.1_g000001 Rmu_co8333451.1_g000001 Rmu_co8389363.1_g000001 Rmu_sc0001801.1_g000006 Rmu_sc0001801.1_g000023 Rmu_sc0001801.1_g000036 Rmu_sc0002788.1_g000013 Rmu_sc0002868.1_g000014 Rmu_sc0004344.1_g000013 Rmu_sc0004344.1_g000021 Rmu_sc0004344.1_g000027 Rmu_sc0004656.1_g000001 Rmu_sc0006098.1_g000002 Rmu_sc0006098.1_g000007 Rmu_sc0007106.1_g000005 Rmu_sc0007106.1_g000009 Rmu_sc0010912.1_g000001 Rmu_sc0021576.1_g000001 Rmu_sc0031470.1_g000001
rosa_roxburghii Rroxscaffold_2G00122810 Rroxscaffold_2G00123600 Rroxscaffold_2G00124270 Rroxscaffold_2G00124320 Rroxscaffold_2G00124350 Rroxscaffold_2G00136690 Rroxscaffold_2G00136740 Rroxscaffold_2G00136750 Rroxscaffold_2G00136760
rosa_rugosa Rorug02G0139000 Rorug02G0139100 Rorug02G0139200 Rorug02G0139300 Rorug02G0139700 Rorug02G0139900 Rorug02G0221400 Rorug02G0221900 Rorug02G0222100 Rorug02G0231700 Rorug02G0231800 Rorug02G0238400 Rorug02G0238500 Rorug05G0413800 Rorug06G0369500 Rorug07G0161900 Rorug07G0309500.1
rosa_samantha Rh2AG190700 Rh2AG279600 Rh2BG201600 Rh2BG201900 Rh2BG202200 Rh2BG288600 Rh2BG290400 Rh2BG290600 Rh2BG291000 Rh2BG291100 Rh2BG291200 Rh2BG291300 Rh2CG195400 Rh2DG196900 Rh2DG197400 Rh2DG197700 Rh2DG283900 Rh2DG285600 Rh2DG285700 Rh2DG286000 Rh2DG286100 Rh2DG286200 Rh2DG286300 Rh2DG305000 Rh2DG305100 Rh2DG305200 Rh2DG305400 Rh5DG500100 Rh6AG481700 Rh6BG491200 Rh6DG482200
rosa_wichuraiana Rw2G014970 Rw2G015010 Rw2G015030 Rw2G022240 Rw2G022250 Rw2G022290 Rw2G022300 Rw2G022310 Rw2G022320 Rw5G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 612
Acc36I ACCTGC 1 cut(s) 410
Acc65I GGTACC 1 cut(s) 810
AccB1I GGYRCC 1 cut(s) 810
AccB7I CCANNNNNTGG 1 cut(s) 503
AccIII TCCGGA 1 cut(s) 336
AclWI GGATC 3 cut(s) 201, 488, 501
AcsI RAATTY 1 cut(s) 83
AcvI CACGTG 1 cut(s) 739
AfaI GTAC 3 cut(s) 686, 704, 812
AfiI CCNNNNNNNGG 3 cut(s) 104, 503, 850
AflII CTTAAG 1 cut(s) 557
AflIII ACRYGT 1 cut(s) 738
AgsI TTSAA 5 cut(s) 83, 368, 623, 839, 873
AhlI ACTAGT 1 cut(s) 430
AjnI CCWGG 1 cut(s) 218
AleI CACNNNNGTG 1 cut(s) 34
AluBI AGCT 2 cut(s) 446, 460
AluI AGCT 2 cut(s) 446, 460
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 3 cut(s) 201, 488, 501
Aor13HI TCCGGA 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 860
ApoI RAATTY 1 cut(s) 83
Asp718I GGTACC 1 cut(s) 810
BamHI GGATCC 1 cut(s) 493
BanI GGYRCC 1 cut(s) 810
BauI CACGAG 3 cut(s) 387, 479, 654
BbrPI CACGTG 1 cut(s) 739
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 847
BccI CCATC 3 cut(s) 658, 704, 720
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 1 cut(s) 220
BclI TGATCA 1 cut(s) 463
BcuI ACTAGT 1 cut(s) 430
BfaI CTAG 3 cut(s) 32, 270, 431
BfmI CTRYAG 1 cut(s) 861
BfrI CTTAAG 1 cut(s) 557
BfuAI ACCTGC 1 cut(s) 410
BisI GCNGC 1 cut(s) 861
BlsI GCNGC 1 cut(s) 862
BmcAI AGTACT 1 cut(s) 704
Bme1390I CCNGG 1 cut(s) 220
BmiI GGNNCC 4 cut(s) 405, 495, 579, 812
BmrFI CCNGG 1 cut(s) 220
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 4 cut(s) 275, 406, 505, 739
BmuI ACTGGG 1 cut(s) 162
BpmI CTGGAG 2 cut(s) 750, 777
BpuEI CTTGAG 1 cut(s) 332
BsaAI YACGTR 2 cut(s) 439, 739
BsaBI GATNNNNATC 2 cut(s) 498, 519
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 336
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 503, 850
Bse1I ACTGG 2 cut(s) 157, 767
Bse3DI GCAATG 1 cut(s) 305
Bse8I GATNNNNATC 2 cut(s) 498, 519
BseAI TCCGGA 1 cut(s) 336
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 3 cut(s) 520, 520, 826
BseJI GATNNNNATC 2 cut(s) 498, 519
BseLI CCNNNNNNNGG 3 cut(s) 104, 503, 850
BseMI GCAATG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 157, 767
BseXI GCAGC 1 cut(s) 847
BseYI CCCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 772
BshNI GGYRCC 1 cut(s) 810
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 337
BslI CCNNNNNNNGG 3 cut(s) 104, 503, 850
BsmI GAATGC 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 333
Bsp13I TCCGGA 1 cut(s) 336
Bsp143I GATC 6 cut(s) 193, 463, 493, 733, 819, 847
BspEI TCCGGA 1 cut(s) 336
BspHI TCATGA 1 cut(s) 886
BspLI GGNNCC 4 cut(s) 405, 495, 579, 812
BspMAI CTGCAG 1 cut(s) 865
BspMI ACCTGC 1 cut(s) 410
BspPI GGATC 3 cut(s) 201, 488, 501
BspQI GCTCTTC 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 810
BspTI CTTAAG 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 305
BsrI ACTGG 2 cut(s) 157, 767
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 6 cut(s) 193, 463, 493, 733, 819, 847
BssSI CACGAG 3 cut(s) 387, 479, 654
Bst2BI CACGAG 3 cut(s) 387, 479, 654
Bst2UI CCWGG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 453
BstAFI CTTAAG 1 cut(s) 557
BstBAI YACGTR 2 cut(s) 439, 739
BstC8I GCNNGC 2 cut(s) 444, 474
BstDEI CTNAG 1 cut(s) 602
BstF5I GGATG 3 cut(s) 520, 520, 826
BstKTI GATC 6 cut(s) 196, 466, 496, 736, 822, 850
BstMBI GATC 6 cut(s) 193, 463, 493, 733, 819, 847
BstMWI GCNNNNNNNGC 1 cut(s) 727
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 861
BstV1I GCAGC 1 cut(s) 847
BstX2I RGATCY 2 cut(s) 193, 493
BstYI RGATCY 2 cut(s) 193, 493
BtsCI GGATG 3 cut(s) 520, 520, 826
BveI ACCTGC 1 cut(s) 410
Cac8I GCNNGC 2 cut(s) 444, 474
CciI TCATGA 1 cut(s) 886
Csp6I GTAC 3 cut(s) 685, 703, 811
CviAII CATG 2 cut(s) 887, 895
CviJI RGCY 4 cut(s) 317, 385, 446, 460
CviKI_1 RGCY 4 cut(s) 317, 385, 446, 460
CviQI GTAC 3 cut(s) 685, 703, 811
DdeI CTNAG 1 cut(s) 602
DpnI GATC 6 cut(s) 195, 465, 495, 735, 821, 849
DpnII GATC 6 cut(s) 193, 463, 493, 733, 819, 847
DrdI GACNNNNNNGTC 1 cut(s) 612
DseDI GACNNNNNNGTC 1 cut(s) 612
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Eco72I CACGTG 1 cut(s) 739
EcoRII CCWGG 1 cut(s) 218
FaeI CATG 2 cut(s) 890, 898
FatI CATG 2 cut(s) 886, 894
FauNDI CATATG 3 cut(s) 468, 488, 781
FbaI TGATCA 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 861
FokI GGATG 3 cut(s) 507, 527, 813
Fsp4HI GCNGC 1 cut(s) 861
FspBI CTAG 3 cut(s) 32, 270, 431
GluI GCNGC 1 cut(s) 861
GsaI CCCAGC 1 cut(s) 101
GsuI CTGGAG 2 cut(s) 750, 777
HapII CCGG 1 cut(s) 337
Hin1II CATG 2 cut(s) 890, 898
HinfI GANTC 5 cut(s) 4, 108, 394, 674, 869
HpaII CCGG 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 145, 436
Hpy188I TCNGA 5 cut(s) 57, 67, 376, 673, 901
Hpy188III TCNNGA 6 cut(s) 80, 270, 337, 590, 794, 887
Hpy8I GTNNAC 2 cut(s) 145, 436
Hpy99I CGWCG 1 cut(s) 666
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4IV ACGT 3 cut(s) 438, 610, 738
HpyCH4V TGCA 9 cut(s) 132, 230, 266, 419, 442, 472, 636, 789, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 727
HpyF3I CTNAG 1 cut(s) 602
HpySE526I ACGT 3 cut(s) 438, 610, 738
Hsp92II CATG 2 cut(s) 890, 898
Kpn2I TCCGGA 1 cut(s) 336
KpnI GGTACC 1 cut(s) 814
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 6 cut(s) 193, 463, 493, 733, 819, 847
LguI GCTCTTC 1 cut(s) 453
Lsp1109I GCAGC 1 cut(s) 847
LweI GCATC 4 cut(s) 275, 406, 505, 739
MaeI CTAG 3 cut(s) 32, 270, 431
MaeII ACGT 3 cut(s) 438, 610, 738
MaeIII GTNAC 2 cut(s) 25, 426
MalI GATC 6 cut(s) 195, 465, 495, 735, 821, 849
MboI GATC 6 cut(s) 193, 463, 493, 733, 819, 847
MboII GAAGA 2 cut(s) 350, 440
MflI RGATCY 2 cut(s) 193, 493
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 3 cut(s) 83, 288, 627
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 879
MnlI CCTC 6 cut(s) 98, 307, 363, 417, 475, 871
MroI TCCGGA 1 cut(s) 336
MseI TTAA 4 cut(s) 47, 198, 558, 771
MslI CAYNNNNRTG 5 cut(s) 34, 360, 513, 551, 831
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 1 cut(s) 220
Mva1269I GAATGC 1 cut(s) 558
MvaI CCWGG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 727
NdeI CATATG 3 cut(s) 468, 488, 781
NdeII GATC 6 cut(s) 193, 463, 493, 733, 819, 847
NlaIII CATG 2 cut(s) 890, 898
NlaIV GGNNCC 4 cut(s) 405, 495, 579, 812
NmuCI GTSAC 1 cut(s) 426
OliI CACNNNNGTG 1 cut(s) 34
PagI TCATGA 1 cut(s) 886
PciSI GCTCTTC 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 661
PctI GAATGC 1 cut(s) 558
PfeI GAWTC 4 cut(s) 108, 394, 674, 869
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 1 cut(s) 862
PleI GAGTC 1 cut(s) 12
PmaCI CACGTG 1 cut(s) 739
PmlI CACGTG 1 cut(s) 739
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 2 cut(s) 439, 739
Psp6I CCWGG 1 cut(s) 218
PspCI CACGTG 1 cut(s) 739
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 4 cut(s) 405, 495, 579, 812
PstI CTGCAG 1 cut(s) 865
PsuI RGATCY 2 cut(s) 193, 493
RsaI GTAC 3 cut(s) 686, 704, 812
RsaNI GTAC 3 cut(s) 685, 703, 811
RseI CAYNNNNRTG 5 cut(s) 34, 360, 513, 551, 831
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 4 cut(s) 47, 198, 558, 771
SatI GCNGC 1 cut(s) 861
Sau3AI GATC 6 cut(s) 193, 463, 493, 733, 819, 847
ScaI AGTACT 1 cut(s) 704
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 1 cut(s) 333
SfaNI GCATC 4 cut(s) 275, 406, 505, 739
SfcI CTRYAG 1 cut(s) 861
SmiMI CAYNNNNRTG 5 cut(s) 34, 360, 513, 551, 831
SmlI CTYRAG 2 cut(s) 311, 557
SmoI CTYRAG 2 cut(s) 311, 557
SpeI ACTAGT 1 cut(s) 430
Sse9I AATT 3 cut(s) 83, 288, 627
SspI AATATT 1 cut(s) 371
SspMI CTAG 3 cut(s) 32, 270, 431
StyD4I CCNGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 255
TaiI ACGT 3 cut(s) 441, 613, 741
TaqI TCGA 4 cut(s) 7, 250, 616, 661
TasI AATT 3 cut(s) 83, 288, 627
TatI WGTACW 1 cut(s) 702
TfiI GAWTC 4 cut(s) 108, 394, 674, 869
Tru1I TTAA 4 cut(s) 47, 198, 558, 771
Tru9I TTAA 4 cut(s) 47, 198, 558, 771
TseFI GTSAC 1 cut(s) 426
TseI GCWGC 1 cut(s) 860
Tsp45I GTSAC 1 cut(s) 426
TspDTI ATGAA 2 cut(s) 768, 903
Van91I CCANNNNNTGG 1 cut(s) 503
Vha464I CTTAAG 1 cut(s) 557
XapI RAATTY 1 cut(s) 83
XbaI TCTAGA 1 cut(s) 269
XspI CTAG 3 cut(s) 32, 270, 431
ZrmI AGTACT 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.