AT5G10310

EPIDERMAL PATTERNING FACTOR-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013513
Physical Location & Seq
Reverse (-)
3241439 .. 3242380
942 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10310.1

Sequence Viewer

Length: 369 bp
ATGTTTGCTATATACAAATCAACCCTTCTTCTTCTTCCTCTCATTCTCATTCTTCTCATCACTCCACAAGTCTCATCCTTTCTTCAACCTATCCAACCTCCTATTTCTCCTCAAGTCGCTTTGATTGAAGATAAAGCAAGATTAGGTTCAACACCACCAAGCTGCCACAACAGATGCAACAACTGCCATCCTTGCATGGCTATTCAAGTACCAACTCTCCCGACTCGCTCCCGCTTCACACGAGTTAACCCGTTTTCCGGTGGATTCGTACGACCTCCTTCTTCTCTAACCACCGTTCTTGATCAGTACTCTAATTACAAACCTATGGGATGGAAATGTCATTGCAATGGCCACTTTTATAATCCTTAA

Protein Analysis

122

Amino Acids

13.65

Weight (kDa)

9.42

Isoelectric Point (pI)

67.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 47 - 122 2.3e-20 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013513)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10310 AT5G10310
fragaria_vesca FvH4_1g20560
malus_domestica MD01G1033300.v1.1 MD15G1322000.v1.1
prunus_persica Prupe.6G190800_v2.0.a1
pyrus_communis pycom01g06080
rosa_chinensis RchiOBHm_Chr2g0112781
rosa_laevigata RLG00000018009
rosa_multiflora Rmu_co8293215.1_g000001 Rmu_sc0001708.1_g000028 Rmu_sc0002351.1_g000005
rosa_roxburghii Rroxscaffold_2G00131150
rosa_rugosa Rorug02G0182700
rosa_samantha Rh2AG237200 Rh2BG250000
rosa_wichuraiana Rw2G018350 Rw2G018540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AciI CCGC 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 349
AfaI GTAC 3 cut(s) 210, 270, 308
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 4 cut(s) 86, 128, 150, 206
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 76
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 162
BalI TGGCCA 1 cut(s) 351
BauI CACGAG 1 cut(s) 240
BbvI GCAGC 1 cut(s) 149
BccI CCATC 2 cut(s) 195, 324
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 76
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 308
BmsI GCATC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse3DI GCAATG 2 cut(s) 340, 352
BseGI GGATG 3 cut(s) 74, 187, 335
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 2 cut(s) 340, 352
BseRI GAGGAG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 149
BshFI GGCC 1 cut(s) 351
BsiSI CCGG 1 cut(s) 258
BsiWI CGTACG 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 1 cut(s) 351
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 1 cut(s) 232
BspANI GGCC 1 cut(s) 351
BsrDI GCAATG 2 cut(s) 340, 352
BssMI GATC 1 cut(s) 301
BssSI CACGAG 1 cut(s) 240
Bst2BI CACGAG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 295
BstAPI GCANNNNNTGC 1 cut(s) 183
BstF5I GGATG 3 cut(s) 74, 187, 335
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 2 cut(s) 183, 192
BstV1I GCAGC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 351
BtsCI GGATG 3 cut(s) 74, 187, 335
Csp6I GTAC 3 cut(s) 209, 269, 307
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 1 cut(s) 196
CviJI RGCY 3 cut(s) 162, 200, 351
CviKI_1 RGCY 3 cut(s) 162, 200, 351
CviQI GTAC 3 cut(s) 209, 269, 307
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 349
FaeI CATG 1 cut(s) 199
FaiI YATR 5 cut(s) 11, 13, 197, 326, 360
FatI CATG 1 cut(s) 195
FauI CCCGC 1 cut(s) 239
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 163
FokI GGATG 3 cut(s) 61, 174, 342
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
HaeIII GGCC 1 cut(s) 351
HapII CCGG 1 cut(s) 258
Hin1II CATG 1 cut(s) 199
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 2 cut(s) 223, 264
HpaI GTTAAC 1 cut(s) 247
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 220, 299
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 2 cut(s) 35, 288
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 3 cut(s) 177, 195, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 192
Hsp92II CATG 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 301
KspAI GTTAAC 1 cut(s) 247
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 1 cut(s) 271
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 164
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 7 cut(s) 20, 23, 26, 44, 74, 140, 273
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 1 cut(s) 313
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 4 cut(s) 48, 108, 120, 285
Mox20I TGGCCA 1 cut(s) 351
MscI TGGCCA 1 cut(s) 351
MseI TTAA 2 cut(s) 246, 367
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 351
MspI CCGG 1 cut(s) 258
MwoI GCNNNNNNNGC 2 cut(s) 183, 192
NdeII GATC 1 cut(s) 301
NlaIII CATG 1 cut(s) 199
PfeI GAWTC 1 cut(s) 264
Pfl23II CGTACG 1 cut(s) 268
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PsiI TTATAA 1 cut(s) 360
PspLI CGTACG 1 cut(s) 268
RsaI GTAC 3 cut(s) 210, 270, 308
RsaNI GTAC 3 cut(s) 209, 269, 307
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 2 cut(s) 246, 367
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 1 cut(s) 301
ScaI AGTACT 1 cut(s) 308
SchI GAGTC 1 cut(s) 217
SetI ASST 6 cut(s) 91, 100, 148, 164, 277, 325
SfaNI GCATC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 1 cut(s) 313
SsiI CCGC 1 cut(s) 232
TaaI ACNGT 1 cut(s) 295
TasI AATT 1 cut(s) 313
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 2 cut(s) 246, 367
Tru9I TTAA 2 cut(s) 246, 367
TseI GCWGC 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.