Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013513

Physical Location & Seq

Genomic Coordinates Reverse (-)

19794918 .. 19796115

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G190800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAATAATCCACTTAATCTTCTCTTCAAAGCCACCAGAGCCATTATGCTTCTGCATTTTCTTCTTCTCTCTCCAGCCTCTTGTTTTAGCACTCATTCTCTCCGGGACCTTTTATTTGAGGAGAAAACCAGGCTGGGATCCACGCCGCCCAGCTGCCACAACAAGTGCAACCAGTGCCATCCATGCATGGCGGTCCAGGTGCCTACAATACCCAGCCACGATCGGGTCGAACCGGGCATGACCCGATCCTTCCCAATGATGTTCTTCGACCCATCTCATCCGGGTACCAACAACAAGTACTCCAATTACAAGCCTCTGGGTTGGAAATGCCACTGTGGTGATCACTTCTTCAACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048731 GO:0048856 GO:0048869 GO:0090558 GO:0090626 GO:0090627 GO:0090698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

120

Amino Acids

13.55

Weight (kDa)

8.77

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10310 AT5G10310
fragaria_vesca	FvH4_1g20560
malus_domestica	MD01G1033300.v1.1 MD15G1322000.v1.1
prunus_persica	Prupe.6G190800_v2.0.a1
pyrus_communis	pycom01g06080
rosa_chinensis	RchiOBHm_Chr2g0112781
rosa_laevigata	RLG00000018009
rosa_multiflora	Rmu_co8293215.1_g000001 Rmu_sc0001708.1_g000028 Rmu_sc0002351.1_g000005
rosa_roxburghii	Rroxscaffold_2G00131150
rosa_rugosa	Rorug02G0182700
rosa_samantha	Rh2AG237200 Rh2BG250000
rosa_wichuraiana	Rw2G018350 Rw2G018540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	2 cut(s)	199, 284
AciI	CCGC	2 cut(s)	146, 191
AclWI	GGATC	3 cut(s)	132, 145, 240
AfaI	GTAC	2 cut(s)	286, 299
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	2 cut(s)	28, 352
AjnI	CCWGG	2 cut(s)	128, 195
AleI	CACNNNNGTG	1 cut(s)	336
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
AlwI	GGATC	3 cut(s)	132, 145, 240
ApeKI	GCWGC	1 cut(s)	153
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
Asp718I	GGTACC	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	106, 193
AsuC2I	CCSGG	3 cut(s)	104, 234, 282
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	2 cut(s)	106, 193
BamHI	GGATCC	1 cut(s)	137
BanI	GGYRCC	2 cut(s)	199, 284
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	2 cut(s)	186, 280
BciT130I	CCWGG	2 cut(s)	130, 197
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	3 cut(s)	104, 234, 282
BisI	GCNGC	2 cut(s)	146, 154
BlsI	GCNGC	2 cut(s)	147, 155
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	5 cut(s)	104, 130, 197, 234, 282
Bme18I	GGWCC	2 cut(s)	106, 193
BmgT120I	GGNCC	2 cut(s)	106, 193
BmiI	GGNNCC	4 cut(s)	107, 139, 201, 286
BmrFI	CCNGG	5 cut(s)	104, 130, 197, 234, 282
BpmI	CTGGAG	1 cut(s)	57
BpuMI	CCSGG	3 cut(s)	104, 234, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	130, 197
BseGI	GGATG	2 cut(s)	178, 277
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	140
BseYI	CCCAGC	3 cut(s)	133, 149, 212
Bsh1285I	CGRYCG	1 cut(s)	223
BshNI	GGYRCC	2 cut(s)	199, 284
BsiEI	CGRYCG	1 cut(s)	223
BsiSI	CCGG	3 cut(s)	103, 233, 281
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	119
Bsp143I	GATC	4 cut(s)	137, 220, 245, 340
BspACI	CCGC	2 cut(s)	146, 191
BspLI	GGNNCC	4 cut(s)	107, 139, 201, 286
BspPI	GGATC	3 cut(s)	132, 145, 240
BspT107I	GGYRCC	2 cut(s)	199, 284
BsrI	ACTGG	1 cut(s)	172
BssMI	GATC	4 cut(s)	137, 220, 245, 340
Bst2UI	CCWGG	2 cut(s)	130, 197
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	178, 277
BstKTI	GATC	4 cut(s)	140, 223, 248, 343
BstMBI	GATC	4 cut(s)	137, 220, 245, 340
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 174, 183
BstNI	CCWGG	2 cut(s)	130, 197
BstSCI	CCNGG	5 cut(s)	102, 128, 195, 232, 280
BstV1I	GCAGC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	178, 277
BtsIMutI	CAGTG	2 cut(s)	179, 331
Cfr13I	GGNCC	2 cut(s)	106, 193
Csp6I	GTAC	2 cut(s)	285, 298
CviAII	CATG	3 cut(s)	183, 187, 238
CviJI	RGCY	7 cut(s)	32, 41, 77, 133, 153, 216, 313
CviKI_1	RGCY	7 cut(s)	32, 41, 77, 133, 153, 216, 313
CviQI	GTAC	2 cut(s)	285, 298
DpnI	GATC	4 cut(s)	139, 222, 247, 342
DpnII	GATC	4 cut(s)	137, 220, 245, 340
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	106, 193
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	128, 195
EcoT22I	ATGCAT	1 cut(s)	188
FaeI	CATG	3 cut(s)	186, 190, 241
FaiI	YATR	4 cut(s)	47, 184, 188, 239
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	3 cut(s)	182, 186, 237
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	146, 154
FokI	GGATG	2 cut(s)	165, 264
Fsp4HI	GCNGC	2 cut(s)	146, 154
GluI	GCNGC	2 cut(s)	146, 154
GsaI	CCCAGC	3 cut(s)	137, 153, 216
GsuI	CTGGAG	1 cut(s)	57
HapII	CCGG	3 cut(s)	103, 233, 281
Hin1II	CATG	3 cut(s)	186, 190, 241
HpaII	CCGG	3 cut(s)	103, 233, 281
HphI	GGTGA	1 cut(s)	350
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	3 cut(s)	55, 168, 186
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 174, 183
Hsp92II	CATG	3 cut(s)	186, 190, 241
KpnI	GGTACC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	137, 220, 245, 340
Lsp1109I	GCAGC	1 cut(s)	140
MalI	GATC	4 cut(s)	139, 222, 247, 342
MboI	GATC	4 cut(s)	137, 220, 245, 340
MboII	GAAGA	6 cut(s)	11, 16, 53, 56, 256, 340
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	3 cut(s)	88, 112, 324
Mph1103I	ATGCAT	1 cut(s)	188
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	3 cut(s)	103, 233, 281
MspR9I	CCNGG	5 cut(s)	104, 130, 197, 234, 282
MvaI	CCWGG	2 cut(s)	130, 197
MwoI	GCNNNNNNNGC	3 cut(s)	38, 174, 183
NciI	CCSGG	3 cut(s)	104, 234, 282
NdeII	GATC	4 cut(s)	137, 220, 245, 340
NlaIII	CATG	3 cut(s)	186, 190, 241
NlaIV	GGNNCC	4 cut(s)	107, 139, 201, 286
NsiI	ATGCAT	1 cut(s)	188
OliI	CACNNNNGTG	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	147, 155
Ple19I	CGATCG	1 cut(s)	223
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	128, 195
PspFI	CCCAGC	3 cut(s)	133, 149, 212
PspGI	CCWGG	2 cut(s)	128, 195
PspN4I	GGNNCC	4 cut(s)	107, 139, 201, 286
PspPI	GGNCC	2 cut(s)	106, 193
PspPPI	RGGWCCY	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	137
PvuI	CGATCG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	153
RsaI	GTAC	2 cut(s)	286, 299
RsaNI	GTAC	2 cut(s)	285, 298
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	2 cut(s)	146, 154
Sau3AI	GATC	4 cut(s)	137, 220, 245, 340
Sau96I	GGNCC	2 cut(s)	106, 193
ScaI	AGTACT	1 cut(s)	299
ScrFI	CCNGG	5 cut(s)	104, 130, 197, 234, 282
SetI	ASST	3 cut(s)	111, 155, 201
SinI	GGWCC	2 cut(s)	106, 193
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	2 cut(s)	146, 191
StyD4I	CCNGG	5 cut(s)	102, 128, 195, 232, 280
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	2 cut(s)	228, 267
TasI	AATT	1 cut(s)	304
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	179, 338
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	179, 338
VpaK11BI	GGWCC	2 cut(s)	106, 193
ZrmI	AGTACT	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.