MD01G1033300.v1.1

EPIDERMAL PATTERNING FACTOR-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0013513
Physical Location & Seq
Reverse (-)
11571417 .. 11572345
929 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1033300.v1.1.491

Sequence Viewer

Length: 390 bp
ATGAATAATTACTCCATTTATCTTCTTTTCAAAGTCACCAGAGCCATCATGCTTCTGCATTTTCTTATCTCTTCAATTCCAGCCGCCTCTTGTTTTACTTCTCATCTGCCTCAGCGTTTCACTCCTTCTCTTCGGGGAATATTATTTGAGGAGAAAACCAGGCTAGGATCCAAACCACCAAGCTGCCACAACAAGTGCAACGAGTGCCACCCATGCATGGCGGTTCAAGTGCCCACCATGCCCAGCTACGACCGGCAGATCGAACCGGGCATGACCCGAACCATGTCCATGATGTTCCTTGACCCATCTCATCCAGGTACCAACAAGTACTCCAATTACAAGCCTCTGGGTTGGAAATGCCACTGTGGTGACAACTTCTTCAATCCCTAG

Protein Analysis

130

Amino Acids

14.75

Weight (kDa)

9.06

Isoelectric Point (pI)

59.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 54 - 129 1.3e-20 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013513)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10310 AT5G10310
fragaria_vesca FvH4_1g20560
malus_domestica MD01G1033300.v1.1 MD15G1322000.v1.1
prunus_persica Prupe.6G190800_v2.0.a1
pyrus_communis pycom01g06080
rosa_chinensis RchiOBHm_Chr2g0112781
rosa_laevigata RLG00000018009
rosa_multiflora Rmu_co8293215.1_g000001 Rmu_sc0001708.1_g000028 Rmu_sc0002351.1_g000005
rosa_roxburghii Rroxscaffold_2G00131150
rosa_rugosa Rorug02G0182700
rosa_samantha Rh2AG237200 Rh2BG250000
rosa_wichuraiana Rw2G018350 Rw2G018540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 317
AciI CCGC 2 cut(s) 84, 221
AclWI GGATC 2 cut(s) 162, 175
AfaI GTAC 2 cut(s) 319, 329
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 4 cut(s) 31, 75, 227, 382
AjnI CCWGG 2 cut(s) 158, 313
AleI CACNNNNGTG 1 cut(s) 366
AluBI AGCT 2 cut(s) 183, 246
AluI AGCT 2 cut(s) 183, 246
AlwI GGATC 2 cut(s) 162, 175
ApeKI GCWGC 1 cut(s) 183
Asp718I GGTACC 1 cut(s) 317
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 28, 380
BaeGI GKGCMC 1 cut(s) 234
BamHI GGATCC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 317
BbvCI CCTCAGC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 53, 313
BciT130I CCWGG 2 cut(s) 160, 315
BcnI CCSGG 1 cut(s) 267
BfaI CTAG 2 cut(s) 164, 388
BisI GCNGC 2 cut(s) 84, 184
BlsI GCNGC 2 cut(s) 85, 185
BmcAI AGTACT 1 cut(s) 329
Bme1390I CCNGG 3 cut(s) 160, 267, 315
BmiI GGNNCC 2 cut(s) 169, 319
BmrFI CCNGG 3 cut(s) 160, 267, 315
Bpu10I CCTNAGC 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse118I RCCGGY 1 cut(s) 252
BseBI CCWGG 2 cut(s) 160, 315
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 253
BshNI GGYRCC 1 cut(s) 317
BsiEI CGRYCG 1 cut(s) 253
BsiSI CCGG 2 cut(s) 253, 266
BslI CCNNNNNNNGG 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 167, 258
BspACI CCGC 2 cut(s) 84, 221
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 169, 319
BspPI GGATC 2 cut(s) 162, 175
BspT107I GGYRCC 1 cut(s) 317
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssMI GATC 2 cut(s) 167, 258
Bst2UI CCWGG 2 cut(s) 160, 315
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 2 cut(s) 76, 135
BstAPI GCANNNNNTGC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 2 cut(s) 170, 261
BstMBI GATC 2 cut(s) 167, 258
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 3 cut(s) 204, 213, 238
BstNI CCWGG 2 cut(s) 160, 315
BstSCI CCNGG 3 cut(s) 158, 265, 313
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 252
Csp6I GTAC 2 cut(s) 318, 328
CviAII CATG 7 cut(s) 49, 213, 217, 238, 271, 283, 289
CviJI RGCY 6 cut(s) 44, 83, 163, 183, 246, 343
CviKI_1 RGCY 6 cut(s) 44, 83, 163, 183, 246, 343
CviQI GTAC 2 cut(s) 318, 328
DdeI CTNAG 1 cut(s) 111
DpnI GATC 2 cut(s) 169, 260
DpnII GATC 2 cut(s) 167, 258
Eam1104I CTCTTC 2 cut(s) 76, 135
EarI CTCTTC 2 cut(s) 76, 135
EcoRII CCWGG 2 cut(s) 158, 313
EcoT22I ATGCAT 1 cut(s) 218
FaeI CATG 7 cut(s) 52, 216, 220, 241, 274, 286, 292
FaiI YATR 7 cut(s) 50, 214, 218, 239, 272, 284, 290
FatI CATG 7 cut(s) 48, 212, 216, 237, 270, 282, 288
Fnu4HI GCNGC 2 cut(s) 84, 184
FokI GGATG 1 cut(s) 297
Fsp4HI GCNGC 2 cut(s) 84, 184
FspBI CTAG 2 cut(s) 164, 388
GluI GCNGC 2 cut(s) 84, 184
GsaI CCCAGC 1 cut(s) 246
HapII CCGG 2 cut(s) 253, 266
Hin1II CATG 7 cut(s) 52, 216, 220, 241, 274, 286, 292
HpaII CCGG 2 cut(s) 253, 266
HphI GGTGA 2 cut(s) 28, 380
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4V TGCA 3 cut(s) 58, 198, 216
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 213, 238
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 7 cut(s) 52, 216, 220, 241, 274, 286, 292
KpnI GGTACC 1 cut(s) 321
Kzo9I GATC 2 cut(s) 167, 258
Lsp1109I GCAGC 1 cut(s) 170
MaeI CTAG 2 cut(s) 164, 388
MaeIII GTNAC 2 cut(s) 34, 368
MalI GATC 2 cut(s) 169, 260
MboI GATC 2 cut(s) 167, 258
MboII GAAGA 4 cut(s) 14, 63, 122, 370
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 3 cut(s) 7, 75, 334
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 4 cut(s) 97, 120, 142, 354
Mph1103I ATGCAT 1 cut(s) 218
MslI CAYNNNNRTG 2 cut(s) 287, 366
MspI CCGG 2 cut(s) 253, 266
MspR9I CCNGG 3 cut(s) 160, 267, 315
MvaI CCWGG 2 cut(s) 160, 315
MwoI GCNNNNNNNGC 3 cut(s) 204, 213, 238
NciI CCSGG 1 cut(s) 267
NdeII GATC 2 cut(s) 167, 258
NlaIII CATG 7 cut(s) 52, 216, 220, 241, 274, 286, 292
NlaIV GGNNCC 2 cut(s) 169, 319
NmuCI GTSAC 2 cut(s) 34, 368
NsiI ATGCAT 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 366
PkrI GCNGC 2 cut(s) 85, 185
Psp6I CCWGG 2 cut(s) 158, 313
PspFI CCCAGC 1 cut(s) 242
PspGI CCWGG 2 cut(s) 158, 313
PspN4I GGNNCC 2 cut(s) 169, 319
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 2 cut(s) 319, 329
RsaNI GTAC 2 cut(s) 318, 328
RseI CAYNNNNRTG 2 cut(s) 287, 366
SatI GCNGC 2 cut(s) 84, 184
Sau3AI GATC 2 cut(s) 167, 258
ScaI AGTACT 1 cut(s) 329
ScrFI CCNGG 3 cut(s) 160, 267, 315
SduI GDGCHC 1 cut(s) 234
SetI ASST 3 cut(s) 185, 248, 319
SmiMI CAYNNNNRTG 2 cut(s) 287, 366
Sse9I AATT 3 cut(s) 7, 75, 334
SsiI CCGC 2 cut(s) 84, 221
SspI AATATT 1 cut(s) 141
SspMI CTAG 2 cut(s) 164, 388
StyD4I CCNGG 3 cut(s) 158, 265, 313
TaaI ACNGT 1 cut(s) 365
TaqI TCGA 1 cut(s) 261
TasI AATT 3 cut(s) 7, 75, 334
TatI WGTACW 1 cut(s) 327
TauI GCSGC 1 cut(s) 86
TscAI CASTG 1 cut(s) 368
TseFI GTSAC 2 cut(s) 34, 368
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 2 cut(s) 34, 368
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 368
XspI CTAG 2 cut(s) 164, 388
ZrmI AGTACT 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.