Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8293215.1

Orthogroup ID

OG0013513

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 584

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8293215.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 380 bp

tgaattcttttttcaccatccccatgaattcttcaataaatcttcggtttttcaccgcaaccagagccattattgttcttcttcttcttgttctctctccagcctcttgttttacttctcttcggggactattgtttgctgagaaagccagattgggctcaacaccaccgagctgccacaacaagtgcaaccagtgccacccttgcatggcggtccaagtccccaccatgcccagccgcgaccgggtccgacccgtggggaagacccgacccgctaagcccatgatgctctttgacccgtctcatctggaaaacaggtactccaattacaagccactgggttggaaatgccattgtggtgaccacttcttcaatccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048731 GO:0048856 GO:0048869 GO:0090558 GO:0090626 GO:0090627 GO:0090698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

125

Amino Acids

14.1

Weight (kDa)

9.77

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10310 AT5G10310
fragaria_vesca	FvH4_1g20560
malus_domestica	MD01G1033300.v1.1 MD15G1322000.v1.1
prunus_persica	Prupe.6G190800_v2.0.a1
pyrus_communis	pycom01g06080
rosa_chinensis	RchiOBHm_Chr2g0112781
rosa_laevigata	RLG00000018009
rosa_multiflora	Rmu_co8293215.1_g000001 Rmu_sc0001708.1_g000028 Rmu_sc0002351.1_g000005
rosa_roxburghii	Rroxscaffold_2G00131150
rosa_rugosa	Rorug02G0182700
rosa_samantha	Rh2AG237200 Rh2BG250000
rosa_wichuraiana	Rw2G018350 Rw2G018540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	239
AciI	CCGC	4 cut(s)	56, 211, 237, 272
AcsI	RAATTY	2 cut(s)	3, 27
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	3 cut(s)	207, 243, 255
AgsI	TTSAA	2 cut(s)	35, 372
AjuI	GAANNNNNNNTTGG	2 cut(s)	136, 168
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	305
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	2 cut(s)	3, 27
AspS9I	GGNCC	2 cut(s)	213, 246
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	6, 45, 370
AvaII	GGWCC	2 cut(s)	213, 246
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	2 cut(s)	174, 237
BlpI	GCTNAGC	1 cut(s)	275
BlsI	GCNGC	2 cut(s)	175, 238
Bme1390I	CCNGG	1 cut(s)	244
Bme18I	GGWCC	2 cut(s)	213, 246
BmgT120I	GGNCC	2 cut(s)	213, 246
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	244
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	83
Bpu1102I	GCTNAGC	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 243, 255
Bse1I	ACTGG	2 cut(s)	192, 341
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	3 cut(s)	207, 243, 255
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	2 cut(s)	192, 341
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	2 cut(s)	140, 205
BslI	CCNNNNNNNGG	3 cut(s)	207, 243, 255
BsmAI	GTCTC	1 cut(s)	305
BsmBI	CGTCTC	1 cut(s)	305
BsmFI	GGGAC	2 cut(s)	140, 205
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp1720I	GCTNAGC	1 cut(s)	275
BspACI	CCGC	4 cut(s)	56, 211, 237, 272
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	192, 341
BssECI	CCNNGG	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	140, 275
BstDSI	CCRYGG	1 cut(s)	254
BstEII	GGTNACC	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	17
BstFNI	CGCG	1 cut(s)	239
BstMAI	GTCTC	1 cut(s)	305
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 145, 194, 203, 285
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	242
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	199, 334
Cfr13I	GGNCC	2 cut(s)	213, 246
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	4 cut(s)	24, 207, 228, 282
CviJI	RGCY	8 cut(s)	67, 103, 148, 158, 173, 236, 279, 333
CviKI_1	RGCY	8 cut(s)	67, 103, 148, 158, 173, 236, 279, 333
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	2 cut(s)	140, 275
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	213, 246
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
EcoRI	GAATTC	2 cut(s)	3, 27
EcoT38I	GRGCYC	1 cut(s)	160
Esp3I	CGTCTC	1 cut(s)	305
FaeI	CATG	4 cut(s)	27, 210, 231, 285
FaiI	YATR	4 cut(s)	25, 208, 229, 283
FaqI	GGGAC	2 cut(s)	140, 205
FatI	CATG	4 cut(s)	23, 206, 227, 281
FauI	CCCGC	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	174, 237
FokI	GGATG	1 cut(s)	4
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	2 cut(s)	174, 237
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	2 cut(s)	174, 237
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	83
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	4 cut(s)	27, 210, 231, 285
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	3 cut(s)	6, 45, 370
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	307
HpyCH4V	TGCA	2 cut(s)	188, 206
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 145, 194, 203, 285
HpyF3I	CTNAG	2 cut(s)	140, 275
Hsp92II	CATG	4 cut(s)	27, 210, 231, 285
LpnPI	CCDG	9 cut(s)	75, 113, 162, 205, 246, 256, 292, 300, 322
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	358
MboII	GAAGA	8 cut(s)	23, 34, 70, 73, 76, 112, 273, 360
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	3 cut(s)	3, 27, 324
MmeI	TCCRAC	2 cut(s)	273, 322
MnlI	CCTC	1 cut(s)	114
MslI	CAYNNNNRTG	2 cut(s)	22, 356
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	244
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	5 cut(s)	64, 145, 194, 203, 285
NciI	CCSGG	1 cut(s)	244
NlaIII	CATG	4 cut(s)	27, 210, 231, 285
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	358
PflFI	GACNNNGTC	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	175, 238
PspEI	GGTNACC	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	213, 246
PsyI	GACNNNGTC	1 cut(s)	244
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	2 cut(s)	22, 356
SatI	GCNGC	2 cut(s)	174, 237
Sau96I	GGNCC	2 cut(s)	213, 246
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	2 cut(s)	175, 319
SfaNI	GCATC	1 cut(s)	275
SinI	GGWCC	2 cut(s)	213, 246
SmiMI	CAYNNNNRTG	2 cut(s)	22, 356
Sse9I	AATT	3 cut(s)	3, 27, 324
SsiI	CCGC	4 cut(s)	56, 211, 237, 272
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	242
TasI	AATT	3 cut(s)	3, 27, 324
TauI	GCSGC	1 cut(s)	239
TscAI	CASTG	2 cut(s)	199, 341
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	199, 341
Tth111I	GACNNNGTC	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	213, 246
XapI	RAATTY	2 cut(s)	3, 27
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.