Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015072

Physical Location & Seq

Genomic Coordinates Reverse (-)

3428842 .. 3430492

Gene Structure 1651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCAAGGTGTGATTCGATCCTTCGTCTCCGGTGGAAATGTTGTGAAAGGCTCTGTGCTGCAACATCTCCGTGTGATTAACCCGGCGATTCAGCCTTCTGTGTTTTGTTCACGCTCTGAATCAACTCAACCTGCACGTATGGAGGAATCTGGATTCGAGAGCACAACTATTTCCGATGTCATGAAATCCAAAGGCAAAAGTGCTGATGGATCTTGGCTTTGGTGTACTACTGATGACACTGTTTATGATGCTGTTAAATCCATGACACAACACAATGTTGGTGCCTTGGTGGTTGTGAAACCTGGTGAGCAACAAGCTCTTGCTGGTATCATTACAGAGAGAGATTATCTACGGAAGATCATTGTGCAAGGGAGATCATCCAAATCAACAAAAGTTGGAGACATTATGACTGAAGAGAATAAGCTTATCACTGTGACACCGGAGACCAAGGTCTTGCGTGCTATGCAACTGATGACAGATAACCGAATCAGGCATATTCCGGTAATCAAAGACAAGGGCATGATTGGAATGGTGTCCATAGGAGATGTTGTCCGTGCAGTGGTTCATGAGCATAGAGAGGAGCTTCAACGCCTAAATGCGTATATTCAGGGAGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

206

Amino Acids

22.73

Weight (kDa)

9.1

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	74 - 120	5.3e-08	CBS domain
CBS	PF00571	132 - 188	1.5e-13	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10860
fragaria_vesca	FvH4_3g22060 FvH4_3g32110 FvH4_3g41290
malus_domestica	MD03G1045900.v1.1 MD11G1048200.v1.1
prunus_persica	Prupe.6G037200_v2.0.a1
pyrus_communis	pycom11g03930
rosa_chinensis	RchiOBHm_Chr5g0074091
rosa_laevigata	RLG00000036454
rosa_multiflora	Rmu_sc0000573.1_g000069
rosa_roxburghii	Rroxscaffold_1G00007300
rosa_rugosa	Rorug03G0243100
rosa_samantha	Rh5DG495300 Rh5DG519500
rosa_wichuraiana	Rw5G045180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	281
AclWI	GGATC	2 cut(s)	12, 217
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	1 cut(s)	587
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	3 cut(s)	317, 424, 583
AluI	AGCT	3 cut(s)	317, 424, 583
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	3 cut(s)	31, 393, 437
AlwI	GGATC	2 cut(s)	12, 217
ApeKI	GCWGC	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	31, 393, 437
BfaI	CTAG	1 cut(s)	619
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	2 cut(s)	83, 303
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	2 cut(s)	83, 303
BmsI	GCATC	1 cut(s)	238
BoxI	GACNNNNGTC	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	285, 447
BsaWI	WCCGGW	3 cut(s)	29, 439, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	285, 447
BseGI	GGATG	1 cut(s)	377
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	1 cut(s)	45
BsgI	GTGCAG	2 cut(s)	117, 576
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	4 cut(s)	30, 83, 440, 500
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	3 cut(s)	31, 393, 437
BsmBI	CGTCTC	1 cut(s)	31
Bso31I	GGTCTC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	4 cut(s)	17, 209, 357, 374
BspHI	TCATGA	2 cut(s)	180, 565
BspLI	GGNNCC	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	12, 217
BspT107I	GGYRCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	437
BssECI	CCNNGG	2 cut(s)	285, 447
BssMI	GATC	4 cut(s)	17, 209, 357, 374
BssT1I	CCWWGG	2 cut(s)	285, 447
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	241, 433
Bst6I	CTCTTC	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	377
BstKTI	GATC	4 cut(s)	20, 212, 360, 377
BstMAI	GTCTC	3 cut(s)	31, 393, 437
BstMBI	GATC	4 cut(s)	17, 209, 357, 374
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	1 cut(s)	303
BstPAI	GACNNNNGTC	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	81, 301
BstV1I	GCAGC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	377
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	3 cut(s)	237, 429, 564
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	459
CciI	TCATGA	2 cut(s)	180, 565
CsiI	ACCWGGT	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	4 cut(s)	181, 262, 520, 566
CviJI	RGCY	6 cut(s)	51, 94, 217, 317, 424, 583
CviKI_1	RGCY	6 cut(s)	51, 94, 217, 317, 424, 583
CviQI	GTAC	1 cut(s)	225
DpnI	GATC	4 cut(s)	19, 211, 359, 376
DpnII	GATC	4 cut(s)	17, 209, 357, 374
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	2 cut(s)	285, 447
Eco31I	GGTCTC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	2 cut(s)	285, 447
ErhI	CCWWGG	2 cut(s)	285, 447
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	4 cut(s)	184, 265, 523, 569
FatI	CATG	4 cut(s)	180, 261, 519, 565
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	1 cut(s)	619
GluI	GCNGC	1 cut(s)	59
HapII	CCGG	4 cut(s)	30, 83, 440, 500
Hin1II	CATG	4 cut(s)	184, 265, 523, 569
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	6 cut(s)	13, 88, 119, 146, 153, 486
HpaII	CCGG	4 cut(s)	30, 83, 440, 500
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	2 cut(s)	110, 225
Hpy188I	TCNGA	2 cut(s)	118, 175
Hpy188III	TCNNGA	4 cut(s)	150, 157, 181, 566
Hpy8I	GTNNAC	2 cut(s)	110, 225
HpyAV	CCTTC	2 cut(s)	31, 105
HpyCH4III	ACNGT	2 cut(s)	241, 433
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	6 cut(s)	4, 61, 134, 367, 466, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	4 cut(s)	184, 265, 523, 569
Kzo9I	GATC	4 cut(s)	17, 209, 357, 374
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	1 cut(s)	238
MabI	ACCWGGT	1 cut(s)	301
MaeI	CTAG	1 cut(s)	619
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	433, 614
MalI	GATC	4 cut(s)	19, 211, 359, 376
MboI	GATC	4 cut(s)	17, 209, 357, 374
MboII	GAAGA	2 cut(s)	367, 425
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	3 cut(s)	136, 571, 605
MseI	TTAA	2 cut(s)	78, 255
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	4 cut(s)	30, 83, 440, 500
MspR9I	CCNGG	2 cut(s)	83, 303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	463
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	4 cut(s)	17, 209, 357, 374
NlaIII	CATG	4 cut(s)	184, 265, 523, 569
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	433
PagI	TCATGA	2 cut(s)	180, 565
PfeI	GAWTC	6 cut(s)	13, 88, 119, 146, 153, 486
PkrI	GCNGC	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	137
PshAI	GACNNNNGTC	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	78, 255
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	4 cut(s)	17, 209, 357, 374
ScrFI	CCNGG	2 cut(s)	83, 303
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	9 cut(s)	10, 133, 139, 304, 319, 426, 453, 585, 616
SexAI	ACCWGGT	1 cut(s)	301
SfaNI	GCATC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	69
SspMI	CTAG	1 cut(s)	619
StyD4I	CCNGG	2 cut(s)	81, 301
StyI	CCWWGG	2 cut(s)	285, 447
TaaI	ACNGT	2 cut(s)	241, 433
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	2 cut(s)	16, 156
TatI	WGTACW	1 cut(s)	224
TfiI	GAWTC	6 cut(s)	13, 88, 119, 146, 153, 486
Tru1I	TTAA	2 cut(s)	78, 255
Tru9I	TTAA	2 cut(s)	78, 255
TscAI	CASTG	3 cut(s)	244, 436, 564
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	2 cut(s)	197, 554
TspGWI	ACGGA	3 cut(s)	59, 367, 542
TspRI	CASTG	3 cut(s)	244, 436, 564
XspI	CTAG	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.