Rh5DG495300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0015072
Physical Location & Seq
Reverse (-)
77679124 .. 77679447
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG495300.1

Sequence Viewer

Length: 324 bp
ATGCCGACGGTGGACAAGGCTAGGTGCTCGAACGCGAAGGAGAGAAGCGCTTCGCCGGCCAAAACTGCAACGTCTTCGCCGAAAACCTTGTGGTTGGTGGGCTTCCCGCGGCGGAGATCCTCGTTATCCATGTACGGCAAGTCGTCGTGGATCAACAACATGGTGTGGATCATCTTGACGGCGCAGGCCGCCGGCATGGTGACTGACGAGCTCGCACGCTGCGACACACAGAACCGGTCGGACCCTCTTGGCTCCGGCGAGGAAAGATTACCGCATCGCTTCGTGGATCGTAATCGGGTCTTTCAGCGAAACGGCGGCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.93

Weight (kDa)

10.54

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10860
fragaria_vesca FvH4_3g22060 FvH4_3g32110 FvH4_3g41290
malus_domestica MD03G1045900.v1.1 MD11G1048200.v1.1
prunus_persica Prupe.6G037200_v2.0.a1
pyrus_communis pycom11g03930
rosa_chinensis RchiOBHm_Chr5g0074091
rosa_laevigata RLG00000036454
rosa_multiflora Rmu_sc0000573.1_g000069
rosa_roxburghii Rroxscaffold_1G00007300
rosa_rugosa Rorug03G0243100
rosa_samantha Rh5DG495300 Rh5DG519500
rosa_wichuraiana Rw5G045180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 35, 109
AciI CCGC 6 cut(s) 107, 109, 112, 189, 272, 315
AclWI GGATC 4 cut(s) 111, 158, 176, 294
AcoI YGGCCR 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 1 cut(s) 134
AfeI AGCGCT 1 cut(s) 49
AgeI ACCGGT 1 cut(s) 234
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw21I GWGCWC 2 cut(s) 29, 213
AlwI GGATC 4 cut(s) 111, 158, 176, 294
Aor51HI AGCGCT 1 cut(s) 49
AoxI GGCC 2 cut(s) 57, 186
ApeKI GCWGC 1 cut(s) 219
AsiGI ACCGGT 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 49
AspLEI GCGC 2 cut(s) 50, 184
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 211
AvaII GGWCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 2 cut(s) 29, 213
BbvI GCAGC 1 cut(s) 206
BceAI ACGGC 2 cut(s) 151, 195
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BfaI CTAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 4 cut(s) 110, 189, 220, 316
BlsI GCNGC 4 cut(s) 111, 190, 221, 317
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 243, 253
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 234
Bse118I RCCGGY 3 cut(s) 55, 191, 234
Bse8I GATNNNNATC 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 291
BseXI GCAGC 1 cut(s) 206
Bsh1236I CGCG 2 cut(s) 35, 109
Bsh1285I CGRYCG 1 cut(s) 239
BshFI GGCC 2 cut(s) 59, 188
BshTI ACCGGT 1 cut(s) 234
BsiEI CGRYCG 1 cut(s) 239
BsiHKAI GWGCWC 2 cut(s) 29, 213
BsiSI CCGG 4 cut(s) 56, 192, 235, 255
BsnI GGCC 2 cut(s) 59, 188
Bsp1286I GDGCHC 2 cut(s) 29, 213
Bsp143I GATC 4 cut(s) 116, 150, 168, 286
BspACI CCGC 6 cut(s) 107, 109, 112, 189, 272, 315
BspANI GGCC 2 cut(s) 59, 188
BspFNI CGCG 2 cut(s) 35, 109
BspLI GGNNCC 2 cut(s) 243, 253
BspPI GGATC 4 cut(s) 111, 158, 176, 294
BsrFI RCCGGY 3 cut(s) 55, 191, 234
BssAI RCCGGY 3 cut(s) 55, 191, 234
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 4 cut(s) 116, 150, 168, 286
BssNI GRCGYC 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 10
BstACI GRCGYC 1 cut(s) 318
BstC8I GCNNGC 5 cut(s) 57, 186, 193, 213, 217
BstDSI CCRYGG 1 cut(s) 107
BstFNI CGCG 2 cut(s) 35, 109
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 2 cut(s) 50, 184
BstKTI GATC 4 cut(s) 119, 153, 171, 289
BstMBI GATC 4 cut(s) 116, 150, 168, 286
BstMCI CGRYCG 1 cut(s) 239
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 188
BstUI CGCG 2 cut(s) 35, 109
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 2 cut(s) 59, 188
BtgI CCRYGG 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 260
Cac8I GCNNGC 5 cut(s) 57, 186, 193, 213, 217
CfoI GCGC 2 cut(s) 50, 184
Cfr10I RCCGGY 3 cut(s) 55, 191, 234
Cfr13I GGNCC 1 cut(s) 241
Cfr42I CCGCGG 1 cut(s) 110
CseI GACGC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 234
CviAII CATG 3 cut(s) 130, 160, 196
CviJI RGCY 6 cut(s) 20, 59, 102, 188, 211, 252
CviKI_1 RGCY 6 cut(s) 20, 59, 102, 188, 211, 252
CviQI GTAC 1 cut(s) 133
DpnI GATC 4 cut(s) 118, 152, 170, 288
DpnII GATC 4 cut(s) 116, 150, 168, 286
EaeI YGGCCR 1 cut(s) 57
EciI GGCGGA 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 241
Eco47III AGCGCT 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 3 cut(s) 133, 163, 199
FaiI YATR 3 cut(s) 131, 161, 197
FatI CATG 3 cut(s) 129, 159, 195
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 110, 189, 220, 316
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 4 cut(s) 110, 189, 220, 316
FspBI CTAG 1 cut(s) 21
GlaI GCGC 2 cut(s) 49, 183
GluI GCNGC 4 cut(s) 110, 189, 220, 316
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 2 cut(s) 59, 188
HapII CCGG 4 cut(s) 56, 192, 235, 255
HgaI GACGC 1 cut(s) 307
HhaI GCGC 2 cut(s) 50, 184
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 3 cut(s) 133, 163, 199
Hin6I GCGC 2 cut(s) 48, 182
HinP1I GCGC 2 cut(s) 48, 182
HpaII CCGG 4 cut(s) 56, 192, 235, 255
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 2 cut(s) 10, 148
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 188
HpySE526I ACGT 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 3 cut(s) 133, 163, 199
HspAI GCGC 2 cut(s) 48, 182
KroI GCCGGC 2 cut(s) 55, 191
KroNI GCCGGC 2 cut(s) 57, 193
KspI CCGCGG 1 cut(s) 110
Kzo9I GATC 4 cut(s) 116, 150, 168, 286
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 5 cut(s) 69, 170, 205, 248, 268
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 199
MalI GATC 4 cut(s) 118, 152, 170, 288
MboI GATC 4 cut(s) 116, 150, 168, 286
MboII GAAGA 1 cut(s) 66
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 29, 213
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 3 cut(s) 130, 253, 255
MroNI GCCGGC 2 cut(s) 55, 191
MroXI GAANNNNTTC 1 cut(s) 49
MspA1I CMGCKG 1 cut(s) 109
MspI CCGG 4 cut(s) 56, 192, 235, 255
MvnI CGCG 2 cut(s) 35, 109
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 188
NaeI GCCGGC 2 cut(s) 57, 193
NdeII GATC 4 cut(s) 116, 150, 168, 286
NgoMIV GCCGGC 2 cut(s) 55, 191
NlaIII CATG 3 cut(s) 133, 163, 199
NlaIV GGNNCC 2 cut(s) 243, 253
NmuCI GTSAC 1 cut(s) 199
PcsI WCGNNNNNNNCGW 2 cut(s) 77, 219
PdiI GCCGGC 2 cut(s) 57, 193
PdmI GAANNNNTTC 1 cut(s) 49
PinAI ACCGGT 1 cut(s) 234
PkrI GCNGC 4 cut(s) 111, 190, 221, 317
Psp124BI GAGCTC 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 243, 253
PspPI GGNCC 1 cut(s) 241
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacI GAGCTC 1 cut(s) 213
SacII CCGCGG 1 cut(s) 110
SatI GCNGC 4 cut(s) 110, 189, 220, 316
Sau3AI GATC 4 cut(s) 116, 150, 168, 286
Sau96I GGNCC 1 cut(s) 241
SduI GDGCHC 2 cut(s) 29, 213
SetI ASST 4 cut(s) 26, 74, 89, 213
SfaNI GCATC 1 cut(s) 283
Sfr303I CCGCGG 1 cut(s) 110
SgrBI CCGCGG 1 cut(s) 110
SinI GGWCC 1 cut(s) 241
SsiI CCGC 6 cut(s) 107, 109, 112, 189, 272, 315
SspMI CTAG 1 cut(s) 21
SstI GAGCTC 1 cut(s) 213
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 29
TauI GCSGC 3 cut(s) 112, 191, 318
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.