FvH4_3g22060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015072
Physical Location & Seq
Forward (+)
15115873 .. 15116261
389 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22060.t1

Sequence Viewer

Length: 309 bp
ATGGTGTGGATCATCTCGACAGTGCAGGCCGCCGACATCACCACGGACTCGTCGCCTCTAACGAGCTGGCACGCCGTGAGACACAAAACGGGTCAGACCCGCTTGCCTCCGGCGAGGAGAGAGTACCGCATCGCCTCGTGGATCGTGACCGGGTCTTTCAGTGACACGGTGGCGTCCAAGGCCCGGTTGACGGACTCGGCCTTCTCCACCATAGCTACGGCGGCGATTAGGGGAAGCGAAGGAAACGGGTCGGGTCGGGTGGAGGAGGAGGAGGAGAGATGGGGAGGGTCTGGATCAGTTCAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.03

Weight (kDa)

6.83

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10860
fragaria_vesca FvH4_3g22060 FvH4_3g32110 FvH4_3g41290
malus_domestica MD03G1045900.v1.1 MD11G1048200.v1.1
prunus_persica Prupe.6G037200_v2.0.a1
pyrus_communis pycom11g03930
rosa_chinensis RchiOBHm_Chr5g0074091
rosa_laevigata RLG00000036454
rosa_multiflora Rmu_sc0000573.1_g000069
rosa_roxburghii Rroxscaffold_1G00007300
rosa_rugosa Rorug03G0243100
rosa_samantha Rh5DG495300 Rh5DG519500
rosa_wichuraiana Rw5G045180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 30, 100, 127, 221
AclWI GGATC 3 cut(s) 17, 149, 301
AcyI GRCGYC 1 cut(s) 173
AdeI CACNNNGTG 1 cut(s) 76
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 183, 190
AgsI TTSAA 1 cut(s) 302
AluBI AGCT 2 cut(s) 66, 215
AluI AGCT 2 cut(s) 66, 215
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 3 cut(s) 17, 149, 301
AoxI GGCC 3 cut(s) 27, 180, 198
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 2 cut(s) 151, 184
AsuHPI GGTGA 1 cut(s) 31
BauI CACGAG 1 cut(s) 136
BccI CCATC 1 cut(s) 273
BceAI ACGGC 2 cut(s) 59, 234
BcnI CCSGG 2 cut(s) 151, 184
BcoDI GTCTC 1 cut(s) 73
BisI GCNGC 2 cut(s) 30, 222
BlsI GCNGC 2 cut(s) 31, 223
Bme1390I CCNGG 2 cut(s) 151, 184
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 151, 184
BmsI GCATC 1 cut(s) 138
BpuMI CCSGG 2 cut(s) 151, 184
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 42, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 190
BseDI CCNNGG 2 cut(s) 42, 177
BseLI CCNNNNNNNGG 2 cut(s) 183, 190
BseRI GAGGAG 5 cut(s) 130, 278, 281, 284, 287
BsgI GTGCAG 1 cut(s) 44
BshFI GGCC 3 cut(s) 29, 182, 200
BsiSI CCGG 3 cut(s) 110, 150, 184
BslI CCNNNNNNNGG 2 cut(s) 183, 190
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 3 cut(s) 29, 182, 200
Bsp143I GATC 3 cut(s) 9, 141, 293
BspACI CCGC 4 cut(s) 30, 100, 127, 221
BspANI GGCC 3 cut(s) 29, 182, 200
BspPI GGATC 3 cut(s) 17, 149, 301
BssECI CCNNGG 2 cut(s) 42, 177
BssMI GATC 3 cut(s) 9, 141, 293
BssNI GRCGYC 1 cut(s) 173
BssSI CACGAG 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 22, 169
BstACI GRCGYC 1 cut(s) 173
BstC8I GCNNGC 4 cut(s) 27, 68, 72, 104
BstDSI CCRYGG 1 cut(s) 42
BstKTI GATC 3 cut(s) 12, 144, 296
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 3 cut(s) 9, 141, 293
BstMWI GCNNNNNNNGC 2 cut(s) 179, 221
BstSCI CCNGG 2 cut(s) 149, 182
BsuRI GGCC 3 cut(s) 29, 182, 200
BtgI CCRYGG 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 27, 166
Cac8I GCNNGC 4 cut(s) 27, 68, 72, 104
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 5 cut(s) 29, 66, 182, 200, 215
CviKI_1 RGCY 5 cut(s) 29, 66, 182, 200, 215
CviQI GTAC 1 cut(s) 124
DpnI GATC 3 cut(s) 11, 143, 295
DpnII GATC 3 cut(s) 9, 141, 293
DraIII CACNNNGTG 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaiI YATR 1 cut(s) 212
FauI CCCGC 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 30, 222
Fsp4HI GCNGC 2 cut(s) 30, 222
GluI GCNGC 2 cut(s) 30, 222
HaeIII GGCC 3 cut(s) 29, 182, 200
HapII CCGG 3 cut(s) 110, 150, 184
HgaI GACGC 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 2 cut(s) 47, 194
HpaII CCGG 3 cut(s) 110, 150, 184
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 3 cut(s) 16, 145, 291
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 211, 233
HpyCH4III ACNGT 2 cut(s) 22, 169
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 221
Hsp92I GRCGYC 1 cut(s) 173
Kzo9I GATC 3 cut(s) 9, 141, 293
LpnPI CCDG 6 cut(s) 11, 52, 123, 163, 197, 276
LweI GCATC 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 145, 161
MalI GATC 3 cut(s) 11, 143, 295
MboI GATC 3 cut(s) 9, 141, 293
MlyI GAGTC 2 cut(s) 41, 188
MnlI CCTC 9 cut(s) 66, 108, 117, 145, 256, 259, 262, 265, 278
MspI CCGG 3 cut(s) 110, 150, 184
MspR9I CCNGG 2 cut(s) 151, 184
MwoI GCNNNNNNNGC 2 cut(s) 179, 221
NciI CCSGG 2 cut(s) 151, 184
NdeII GATC 3 cut(s) 9, 141, 293
NmeAIII GCCGAG 1 cut(s) 176
NmuCI GTSAC 2 cut(s) 145, 161
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PflFI GACNNNGTC 1 cut(s) 151
PkrI GCNGC 2 cut(s) 31, 223
PleI GAGTC 2 cut(s) 41, 188
PpsI GAGTC 2 cut(s) 41, 188
PspPI GGNCC 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 151
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 2 cut(s) 30, 222
Sau3AI GATC 3 cut(s) 9, 141, 293
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 2 cut(s) 41, 188
ScrFI CCNGG 2 cut(s) 151, 184
SetI ASST 2 cut(s) 68, 217
SfaNI GCATC 1 cut(s) 138
SsiI CCGC 4 cut(s) 30, 100, 127, 221
StyD4I CCNGG 2 cut(s) 149, 182
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 22, 169
TaqI TCGA 1 cut(s) 17
TauI GCSGC 2 cut(s) 32, 224
TscAI CASTG 2 cut(s) 27, 166
TseFI GTSAC 2 cut(s) 145, 161
Tsp45I GTSAC 2 cut(s) 145, 161
TspGWI ACGGA 2 cut(s) 59, 206
TspRI CASTG 2 cut(s) 27, 166
Tth111I GACNNNGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.