Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000573.1

Orthogroup ID

OG0015072

Physical Location & Seq

Genomic Coordinates Forward (+)

244697 .. 249456

Gene Structure 4760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000573.1_g000069.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atggaggacttatttgattctccattgatctccgacgaaccgaaattttcatctcagataaaaatgcaaggagcacttaaagccttttcatcgcaggggaactttgtgaaaaatgcagttttgcgacacgtccgtgttgtgaatcccctaattcagcctgctttgttttcacgctttgagtctgctgcgcctgcccgcatagaagagcaaggtttcgaaagcactaggattgcagacatcttgaactctaaaggtaaaggtgctgatggttcctggctgtggtgcactacagatgattctgtttatgatgctgttaagtcgatgacccagcacaatgttggagccttggtggtcgtgaaacctggagagcaaaaatctattgcaggaatcataacagagagagattatctcaggaagatcatagtgcagggaagatcatccaagtcaacaaaggttggggatatcatgactgaggagaacaagcttatcactgtcacccctgacaccaaagttctgcgggcaatgcagctgatgacagataaccgaattaggcacattccagttatagatgacaggggaatgcttggtatggtatccattggtgatgtggttcgtgctgtggtgagtgagcaccgagaggagctcgaccgcttgaatgcttttattcaaggcgagagaagtcaccctccaccttgctgtgctccggcgaccggactccgggaaccggtcaccgaaatccggaatccagctattattgccccccaagtggatatccagtcttcgccgataaccttgtggttggtgggcttcccgcggcggagatcgtcattatccatgcacggcaagtcgtcgtggatcaacaacatggtgtggatcatcttgacggcgcaggccgccggcatggtaactgactcagaccctctgacgatctcgcacgctgcgacacacagaacgggtcggaccctcttgcctccggcgaggaaacattaccgcttcgtggatcgtaatcgggtctttcagggaaatggcagcgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

345

Amino Acids

38.21

Weight (kDa)

9.4

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10860
fragaria_vesca	FvH4_3g22060 FvH4_3g32110 FvH4_3g41290
malus_domestica	MD03G1045900.v1.1 MD11G1048200.v1.1
prunus_persica	Prupe.6G037200_v2.0.a1
pyrus_communis	pycom11g03930
rosa_chinensis	RchiOBHm_Chr5g0074091
rosa_laevigata	RLG00000036454
rosa_multiflora	Rmu_sc0000573.1_g000069
rosa_roxburghii	Rroxscaffold_1G00007300
rosa_rugosa	Rorug03G0243100
rosa_samantha	Rh5DG495300 Rh5DG519500
rosa_wichuraiana	Rw5G045180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	814
AccIII	TCCGGA	1 cut(s)	738
AciI	CCGC	8 cut(s)	196, 517, 649, 812, 814, 817, 894, 991
AclWI	GGATC	3 cut(s)	863, 881, 1008
AcsI	RAATTY	1 cut(s)	44
AfiI	CCNNNNNNNGG	7 cut(s)	279, 710, 717, 724, 738, 766, 997
AflIII	ACRYGT	1 cut(s)	127
AgeI	ACCGGT	1 cut(s)	724
AgsI	TTSAA	3 cut(s)	244, 655, 668
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	272, 361
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	4 cut(s)	484, 529, 643, 749
AluI	AGCT	4 cut(s)	484, 529, 643, 749
Alw21I	GWGCWC	5 cut(s)	76, 287, 633, 645, 703
Alw44I	GTGCAC	1 cut(s)	283
AlwI	GGATC	3 cut(s)	863, 881, 1008
Aor13HI	TCCGGA	1 cut(s)	738
AoxI	GGCC	1 cut(s)	891
ApaLI	GTGCAC	1 cut(s)	283
ApeKI	GCWGC	4 cut(s)	185, 526, 938, 1029
ApoI	RAATTY	1 cut(s)	44
AsiGI	ACCGGT	1 cut(s)	724
AspLEI	GCGC	2 cut(s)	190, 889
AspS9I	GGNCC	1 cut(s)	960
AsuC2I	CCSGG	1 cut(s)	719
AsuHPI	GGTGA	5 cut(s)	487, 614, 634, 674, 721
AsuII	TTCGAA	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	960
BaeGI	GKGCMC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	645
BbsI	GAAGAC	1 cut(s)	771
Bbv12I	GWGCWC	5 cut(s)	76, 287, 633, 645, 703
BbvI	GCAGC	3 cut(s)	172, 538, 925
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	2 cut(s)	856, 900
BciT130I	CCWGG	2 cut(s)	274, 363
BciVI	GTATCC	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	719
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	604
BisI	GCNGC	6 cut(s)	186, 527, 815, 894, 939, 1030
BlsI	GCNGC	6 cut(s)	187, 528, 816, 895, 940, 1031
Bme1390I	CCNGG	3 cut(s)	274, 363, 719
Bme18I	GGWCC	1 cut(s)	960
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	960
BmiI	GGNNCC	4 cut(s)	271, 343, 723, 962
BmrFI	CCNGG	3 cut(s)	274, 363, 719
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	771
BplI	GAGNNNNNCTC	4 cut(s)	393, 425, 627, 659
BpmI	CTGGAG	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	1005
BsaJI	CCNNGG	2 cut(s)	345, 812
BsaWI	WCCGGW	3 cut(s)	710, 724, 738
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	7 cut(s)	279, 710, 717, 724, 738, 766, 997
Bse118I	RCCGGY	2 cut(s)	724, 896
Bse1I	ACTGG	2 cut(s)	560, 775
Bse3DI	GCAATG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	1005
BseAI	TCCGGA	1 cut(s)	738
BseBI	CCWGG	2 cut(s)	274, 363
BseDI	CCNNGG	2 cut(s)	345, 812
BseGI	GGATG	1 cut(s)	437
BseJI	GATNNNNATC	1 cut(s)	1005
BseLI	CCNNNNNNNGG	7 cut(s)	279, 710, 717, 724, 738, 766, 997
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	4 cut(s)	68, 424, 462, 927
BseNI	ACTGG	2 cut(s)	560, 775
BseRI	GAGGAG	2 cut(s)	488, 653
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	3 cut(s)	172, 538, 925
BseYI	CCCAGC	1 cut(s)	327
BsgI	GTGCAG	1 cut(s)	446
Bsh1236I	CGCG	1 cut(s)	814
Bsh1285I	CGRYCG	2 cut(s)	649, 711
BshFI	GGCC	1 cut(s)	893
BshTI	ACCGGT	1 cut(s)	724
BsiEI	CGRYCG	2 cut(s)	649, 711
BsiHKAI	GWGCWC	5 cut(s)	76, 287, 633, 645, 703
BsiSI	CCGG	7 cut(s)	704, 711, 718, 725, 739, 897, 974
BslI	CCNNNNNNNGG	7 cut(s)	279, 710, 717, 724, 738, 766, 997
BsmI	GAATGC	2 cut(s)	585, 661
BsnI	GGCC	1 cut(s)	893
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	5 cut(s)	76, 287, 633, 645, 703
Bsp13I	TCCGGA	1 cut(s)	738
Bsp143I	GATC	8 cut(s)	27, 417, 434, 821, 855, 873, 927, 1000
BspACI	CCGC	8 cut(s)	196, 517, 649, 812, 814, 817, 894, 991
BspANI	GGCC	1 cut(s)	893
BspCNI	CTCAG	4 cut(s)	67, 423, 463, 926
BspEI	TCCGGA	1 cut(s)	738
BspFNI	CGCG	1 cut(s)	814
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	4 cut(s)	271, 343, 723, 962
BspPI	GGATC	3 cut(s)	863, 881, 1008
BspQI	GCTCTTC	1 cut(s)	198
BspT104I	TTCGAA	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	528
BsrFI	RCCGGY	2 cut(s)	724, 896
BsrI	ACTGG	2 cut(s)	560, 775
BssAI	RCCGGY	2 cut(s)	724, 896
BssECI	CCNNGG	2 cut(s)	345, 812
BssMI	GATC	8 cut(s)	27, 417, 434, 821, 855, 873, 927, 1000
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	274, 363
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	7 cut(s)	159, 192, 196, 519, 891, 898, 936
BstDEI	CTNAG	4 cut(s)	54, 410, 471, 913
BstDSI	CCRYGG	1 cut(s)	812
BstEII	GGTNACC	1 cut(s)	727
BstF5I	GGATG	1 cut(s)	437
BstFNI	CGCG	1 cut(s)	814
BstHHI	GCGC	2 cut(s)	190, 889
BstKTI	GATC	8 cut(s)	30, 420, 437, 824, 858, 876, 930, 1003
BstMBI	GATC	8 cut(s)	27, 417, 434, 821, 855, 873, 927, 1000
BstMCI	CGRYCG	2 cut(s)	649, 711
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 191, 523, 755, 893
BstNI	CCWGG	2 cut(s)	274, 363
BstPI	GGTNACC	1 cut(s)	727
BstSCI	CCNGG	3 cut(s)	272, 361, 717
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	287
BstUI	CGCG	1 cut(s)	814
BstV1I	GCAGC	3 cut(s)	172, 538, 925
BstV2I	GAAGAC	1 cut(s)	771
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	893
BtgI	CCRYGG	1 cut(s)	812
BtgZI	GCGATG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	437
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	7 cut(s)	159, 192, 196, 519, 891, 898, 936
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	2 cut(s)	190, 889
Cfr10I	RCCGGY	2 cut(s)	724, 896
Cfr13I	GGNCC	1 cut(s)	960
Cfr42I	CCGCGG	1 cut(s)	815
CseI	GACGC	1 cut(s)	1021
CspAI	ACCGGT	1 cut(s)	724
CviAII	CATG	4 cut(s)	466, 835, 865, 901
DdeI	CTNAG	4 cut(s)	54, 410, 471, 913
DpnI	GATC	8 cut(s)	29, 419, 436, 823, 857, 875, 929, 1002
DpnII	GATC	8 cut(s)	27, 417, 434, 821, 855, 873, 927, 1000
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	832
Ecl136II	GAGCTC	1 cut(s)	643
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	645
Eco32I	GATATC	2 cut(s)	463, 772
Eco47I	GGWCC	1 cut(s)	960
Eco53kI	GAGCTC	1 cut(s)	643
Eco91I	GGTNACC	1 cut(s)	727
EcoICRI	GAGCTC	1 cut(s)	643
EcoO65I	GGTNACC	1 cut(s)	727
EcoRII	CCWGG	2 cut(s)	272, 361
EcoRV	GATATC	2 cut(s)	463, 772
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	4 cut(s)	469, 838, 868, 904
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	4 cut(s)	465, 834, 864, 900
FauI	CCCGC	3 cut(s)	203, 510, 819
Fnu4HI	GCNGC	6 cut(s)	186, 527, 815, 894, 939, 1030
FokI	GGATG	1 cut(s)	424
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	6 cut(s)	186, 527, 815, 894, 939, 1030
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	2 cut(s)	189, 888
GluI	GCNGC	6 cut(s)	186, 527, 815, 894, 939, 1030
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	893
HapII	CCGG	7 cut(s)	704, 711, 718, 725, 739, 897, 974
HgaI	GACGC	1 cut(s)	1021
HhaI	GCGC	2 cut(s)	190, 889
Hin1II	CATG	4 cut(s)	469, 838, 868, 904
Hin6I	GCGC	2 cut(s)	188, 887
HinP1I	GCGC	2 cut(s)	188, 887
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	8 cut(s)	17, 142, 179, 296, 387, 714, 742, 911
HpaII	CCGG	7 cut(s)	704, 711, 718, 725, 739, 897, 974
HphI	GGTGA	5 cut(s)	487, 614, 634, 674, 721
Hpy166II	GTNNAC	2 cut(s)	285, 447
Hpy188I	TCNGA	5 cut(s)	34, 57, 916, 924, 960
Hpy188III	TCNNGA	6 cut(s)	241, 355, 412, 466, 739, 880
Hpy8I	GTNNAC	2 cut(s)	285, 447
Hpy99I	CGWCG	2 cut(s)	38, 853
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	8 cut(s)	67, 116, 233, 285, 383, 427, 526, 838
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 191, 523, 755, 893
HpyF3I	CTNAG	4 cut(s)	54, 410, 471, 913
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	469, 838, 868, 904
HspAI	GCGC	2 cut(s)	188, 887
Kpn2I	TCCGGA	1 cut(s)	738
KroI	GCCGGC	1 cut(s)	896
KroNI	GCCGGC	1 cut(s)	898
KspI	CCGCGG	1 cut(s)	815
Kzo9I	GATC	8 cut(s)	27, 417, 434, 821, 855, 873, 927, 1000
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	4 cut(s)	71, 341, 640, 706
Lsp1109I	GCAGC	3 cut(s)	172, 538, 925
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	4 cut(s)	493, 680, 727, 904
MalI	GATC	8 cut(s)	29, 419, 436, 823, 857, 875, 929, 1002
MboI	GATC	8 cut(s)	27, 417, 434, 821, 855, 873, 927, 1000
MboII	GAAGA	4 cut(s)	215, 427, 444, 771
MhlI	GDGCHC	5 cut(s)	76, 287, 633, 645, 703
MluCI	AATT	3 cut(s)	44, 150, 546
MlyI	GAGTC	3 cut(s)	188, 708, 905
MmeI	TCCRAC	3 cut(s)	57, 319, 938
MnlI	CCTC	7 cut(s)	466, 631, 696, 930, 972, 974, 981
MroI	TCCGGA	1 cut(s)	738
MroNI	GCCGGC	1 cut(s)	896
MseI	TTAA	2 cut(s)	78, 315
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	2 cut(s)	529, 814
MspI	CCGG	7 cut(s)	704, 711, 718, 725, 739, 897, 974
MspR9I	CCNGG	3 cut(s)	274, 363, 719
Mva1269I	GAATGC	2 cut(s)	585, 661
MvaI	CCWGG	2 cut(s)	274, 363
MvnI	CGCG	1 cut(s)	814
MwoI	GCNNNNNNNGC	5 cut(s)	80, 191, 523, 755, 893
NaeI	GCCGGC	1 cut(s)	898
NciI	CCSGG	1 cut(s)	719
NdeII	GATC	8 cut(s)	27, 417, 434, 821, 855, 873, 927, 1000
NgoMIV	GCCGGC	1 cut(s)	896
NlaIII	CATG	4 cut(s)	469, 838, 868, 904
NlaIV	GGNNCC	4 cut(s)	271, 343, 723, 962
NmuCI	GTSAC	3 cut(s)	493, 680, 727
NspV	TTCGAA	1 cut(s)	216
OliI	CACNNNNGTG	1 cut(s)	132
PagI	TCATGA	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	938
PctI	GAATGC	2 cut(s)	585, 661
PdiI	GCCGGC	1 cut(s)	898
PfeI	GAWTC	5 cut(s)	17, 142, 296, 387, 742
PfoI	TCCNGGA	1 cut(s)	717
PinAI	ACCGGT	1 cut(s)	724
PkrI	GCNGC	6 cut(s)	187, 528, 816, 895, 940, 1031
PleI	GAGTC	3 cut(s)	187, 708, 905
PpsI	GAGTC	3 cut(s)	187, 708, 905
Psp124BI	GAGCTC	1 cut(s)	645
Psp6I	CCWGG	2 cut(s)	272, 361
PspEI	GGTNACC	1 cut(s)	727
PspFI	CCCAGC	1 cut(s)	327
PspGI	CCWGG	2 cut(s)	272, 361
PspN4I	GGNNCC	4 cut(s)	271, 343, 723, 962
PspPI	GGNCC	1 cut(s)	960
PvuII	CAGCTG	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	645
SacII	CCGCGG	1 cut(s)	815
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	78, 315
SatI	GCNGC	6 cut(s)	186, 527, 815, 894, 939, 1030
Sau3AI	GATC	8 cut(s)	27, 417, 434, 821, 855, 873, 927, 1000
Sau96I	GGNCC	1 cut(s)	960
SchI	GAGTC	3 cut(s)	188, 708, 905
ScrFI	CCNGG	3 cut(s)	274, 363, 719
SduI	GDGCHC	5 cut(s)	76, 287, 633, 645, 703
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	288
Sfr303I	CCGCGG	1 cut(s)	815
SfuI	TTCGAA	1 cut(s)	216
SgrBI	CCGCGG	1 cut(s)	815
SinI	GGWCC	1 cut(s)	960
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	3 cut(s)	44, 150, 546
SsiI	CCGC	8 cut(s)	196, 517, 649, 812, 814, 817, 894, 991
SspMI	CTAG	1 cut(s)	225
SstI	GAGCTC	1 cut(s)	645
StyD4I	CCNGG	3 cut(s)	272, 361, 717
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	216, 320, 645
TasI	AATT	3 cut(s)	44, 150, 546
TauI	GCSGC	2 cut(s)	817, 896
TfiI	GAWTC	5 cut(s)	17, 142, 296, 387, 742
Tru1I	TTAA	2 cut(s)	78, 315
Tru9I	TTAA	2 cut(s)	78, 315
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	3 cut(s)	493, 680, 727
TseI	GCWGC	4 cut(s)	185, 526, 938, 1029
Tsp45I	GTSAC	3 cut(s)	493, 680, 727
TspDTI	ATGAA	2 cut(s)	39, 78
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	496
VneI	GTGCAC	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	960
XapI	RAATTY	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	2 cut(s)	335, 604
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.