Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015072

Physical Location & Seq

Genomic Coordinates Reverse (-)

34710879 .. 34713536

Gene Structure 2658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCAAGGAGCGCTTAAAGCGTTTTCATCACAGGGCAACTTTGTGAAAAATGCAGTCTTGCGACACGTCCGTGTTGTGAATCCCCTAATTCAGCCTGCTTTGTTTTCACGTTTCGAGTCTGTTGCGCCTGCCCGCATAGAAGAGCATGGTTTTGAAAGCACTAAGATTGCAGACGTCCTGAACGCAAAAGGTAAAGGTGCTGATGGTTCCTGGCTGTGGTGCACAACAGATGATTCTGTTTATGATGCTGTTAAGTCGATGACCCAGCACAATGTTGGAGCCTTGGTGGTTGTGAAACCTGGAGAACAAAAATCAATTGCAGGAATCATAACAGAGAGAGATTATCTCCGGAAGATCATAGTGCAGGGGAGATCATCCAAGTCAACAAAGGTTGGGGATATCATGACTGAGGAGAACAAGCTTATCACTGTCACCCCTGACACCAAAGTTCTGCGGGCAATGCAGCTGATGACTGATAACCGAATTAGGCACATCCCAGTTATAGATGACAGAGGAATGCTTGGTATGGTGTCCATTGGTGATGTGGTTCGTGCTGTGGTGAGTGAGCACCGGGAGGAGCTGGACCGCTTGAATGCTTTTATTCAAGGTGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

206

Amino Acids

22.63

Weight (kDa)

9.01

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	73 - 119	7.1e-08	CBS domain
CBS	PF00571	131 - 187	2.8e-14	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10860
fragaria_vesca	FvH4_3g22060 FvH4_3g32110 FvH4_3g41290
malus_domestica	MD03G1045900.v1.1 MD11G1048200.v1.1
prunus_persica	Prupe.6G037200_v2.0.a1
pyrus_communis	pycom11g03930
rosa_chinensis	RchiOBHm_Chr5g0074091
rosa_laevigata	RLG00000036454
rosa_multiflora	Rmu_sc0000573.1_g000069
rosa_roxburghii	Rroxscaffold_1G00007300
rosa_rugosa	Rorug03G0243100
rosa_samantha	Rh5DG495300 Rh5DG519500
rosa_wichuraiana	Rw5G045180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	348
AciI	CCGC	3 cut(s)	133, 454, 586
AcyI	GRCGYC	1 cut(s)	174
AfeI	AGCGCT	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	155, 592, 605
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	2 cut(s)	209, 298
AleI	CACNNNNGTG	1 cut(s)	69
AluBI	AGCT	3 cut(s)	421, 466, 580
AluI	AGCT	3 cut(s)	421, 466, 580
Alw21I	GWGCWC	2 cut(s)	224, 570
Alw44I	GTGCAC	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	348
Aor51HI	AGCGCT	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	463
AspLEI	GCGC	2 cut(s)	13, 127
AspS9I	GGNCC	1 cut(s)	583
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	3 cut(s)	424, 551, 571
AvaII	GGWCC	1 cut(s)	583
BaeGI	GKGCMC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	224, 570
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	2 cut(s)	211, 300
BcnI	CCSGG	1 cut(s)	572
BfaI	CTAG	1 cut(s)	616
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	1 cut(s)	464
BlsI	GCNGC	1 cut(s)	465
Bme1390I	CCNGG	3 cut(s)	211, 300, 572
Bme18I	GGWCC	1 cut(s)	583
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	2 cut(s)	208, 280
BmrFI	CCNGG	3 cut(s)	211, 300, 572
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	491
BplI	GAGNNNNNCTC	2 cut(s)	330, 362
BpmI	CTGGAG	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	572
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	465
BseAI	TCCGGA	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	211, 300
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	374, 492
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	2 cut(s)	425, 590
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	475
BseYI	CCCAGC	1 cut(s)	264
BsgI	GTGCAG	1 cut(s)	383
BsiHKAI	GWGCWC	2 cut(s)	224, 570
BsiSI	CCGG	2 cut(s)	349, 571
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmI	GAATGC	2 cut(s)	522, 598
Bsp1286I	GDGCHC	2 cut(s)	224, 570
Bsp13I	TCCGGA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	354, 371
BspACI	CCGC	3 cut(s)	133, 454, 586
BspCNI	CTCAG	1 cut(s)	400
BspEI	TCCGGA	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	208, 280
BspQI	GCTCTTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	354, 371
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	211, 300
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	4 cut(s)	96, 129, 133, 456
BstDEI	CTNAG	2 cut(s)	162, 408
BstF5I	GGATG	2 cut(s)	374, 492
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 127
BstKTI	GATC	2 cut(s)	357, 374
BstMBI	GATC	2 cut(s)	354, 371
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 17, 460
BstNI	CCWGG	2 cut(s)	211, 300
BstSCI	CCNGG	3 cut(s)	209, 298, 570
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	475
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	374, 492
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	4 cut(s)	96, 129, 133, 456
CciI	TCATGA	1 cut(s)	402
CfoI	GCGC	2 cut(s)	13, 127
Cfr13I	GGNCC	1 cut(s)	583
CviAII	CATG	2 cut(s)	146, 403
CviJI	RGCY	6 cut(s)	94, 214, 281, 421, 466, 580
CviKI_1	RGCY	6 cut(s)	94, 214, 281, 421, 466, 580
DdeI	CTNAG	2 cut(s)	162, 408
DpnI	GATC	2 cut(s)	356, 373
DpnII	GATC	2 cut(s)	354, 371
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	583
Eco47III	AGCGCT	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	209, 298
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	149, 406
FaiI	YATR	8 cut(s)	137, 147, 243, 329, 359, 404, 503, 527
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	2 cut(s)	145, 402
FauI	CCCGC	2 cut(s)	140, 447
Fnu4HI	GCNGC	1 cut(s)	464
FokI	GGATG	2 cut(s)	361, 479
Fsp4HI	GCNGC	1 cut(s)	464
FspBI	CTAG	1 cut(s)	616
GlaI	GCGC	2 cut(s)	12, 126
GluI	GCNGC	1 cut(s)	464
GsaI	CCCAGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	14
HapII	CCGG	2 cut(s)	349, 571
HhaI	GCGC	2 cut(s)	13, 127
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	149, 406
Hin6I	GCGC	2 cut(s)	11, 125
HinP1I	GCGC	2 cut(s)	11, 125
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	4 cut(s)	79, 116, 233, 324
HpaII	CCGG	2 cut(s)	349, 571
HphI	GGTGA	3 cut(s)	424, 551, 571
Hpy166II	GTNNAC	2 cut(s)	222, 384
Hpy188III	TCNNGA	3 cut(s)	178, 349, 403
Hpy8I	GTNNAC	2 cut(s)	222, 384
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	3 cut(s)	66, 109, 174
HpyCH4V	TGCA	7 cut(s)	4, 53, 170, 222, 320, 364, 463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 17, 460
HpyF3I	CTNAG	2 cut(s)	162, 408
HpySE526I	ACGT	3 cut(s)	66, 109, 174
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	149, 406
HspAI	GCGC	2 cut(s)	11, 125
Kpn2I	TCCGGA	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	354, 371
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	3 cut(s)	8, 278, 577
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	616
MaeII	ACGT	3 cut(s)	66, 109, 174
MaeIII	GTNAC	2 cut(s)	430, 611
MalI	GATC	2 cut(s)	356, 373
MboI	GATC	2 cut(s)	354, 371
MboII	GAAGA	2 cut(s)	152, 364
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	224, 570
MluCI	AATT	3 cut(s)	87, 315, 483
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	403, 506, 568
MroI	TCCGGA	1 cut(s)	348
MseI	TTAA	2 cut(s)	15, 252
MslI	CAYNNNNRTG	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	2 cut(s)	349, 571
MspR9I	CCNGG	3 cut(s)	211, 300, 572
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	2 cut(s)	522, 598
MvaI	CCWGG	2 cut(s)	211, 300
MwoI	GCNNNNNNNGC	3 cut(s)	10, 17, 460
NciI	CCSGG	1 cut(s)	572
NdeII	GATC	2 cut(s)	354, 371
NlaIII	CATG	2 cut(s)	149, 406
NlaIV	GGNNCC	2 cut(s)	208, 280
NmuCI	GTSAC	1 cut(s)	430
OliI	CACNNNNGTG	1 cut(s)	69
PagI	TCATGA	1 cut(s)	402
PciSI	GCTCTTC	1 cut(s)	135
PctI	GAATGC	2 cut(s)	522, 598
PfeI	GAWTC	3 cut(s)	79, 233, 324
PkrI	GCNGC	1 cut(s)	465
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	209, 298
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	2 cut(s)	209, 298
PspN4I	GGNNCC	2 cut(s)	208, 280
PspPI	GGNCC	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	15, 252
SatI	GCNGC	1 cut(s)	464
Sau3AI	GATC	2 cut(s)	354, 371
Sau96I	GGNCC	1 cut(s)	583
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	3 cut(s)	211, 300, 572
SduI	GDGCHC	2 cut(s)	224, 570
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	3 cut(s)	87, 315, 483
SsiI	CCGC	3 cut(s)	133, 454, 586
SspMI	CTAG	1 cut(s)	616
StyD4I	CCNGG	3 cut(s)	209, 298, 570
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	3 cut(s)	69, 112, 177
TaqI	TCGA	2 cut(s)	114, 257
TasI	AATT	3 cut(s)	87, 315, 483
TfiI	GAWTC	3 cut(s)	79, 233, 324
Tru1I	TTAA	2 cut(s)	15, 252
Tru9I	TTAA	2 cut(s)	15, 252
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	433
VneI	GTGCAC	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	2 cut(s)	272, 541
XspI	CTAG	1 cut(s)	616
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.