Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015072

Physical Location & Seq

Genomic Coordinates Reverse (-)

80667577 .. 80669281

Gene Structure 1705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG519500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCAAGGAGCACTTAAAGCCTTTTCATCACAGGGGAACTTTGTGAAAAATGCAGTTTTGCGACATGTCCGTGTTGTGAATCCTCTAATTCAGCCCGCTTTGTTTTCACGCTTTGAGTCTGCTGCACCTGCCCGCATAGAAGAGCAAGGTTTCGAAAGCACTAAGATTGCAGACATCTTGAACTCTAAAGGTAAAGGTGCTGATGGTTCCTGGCTGTGGTGCGCTACAGATGATTCTGTTTATGATGCTGTTAAGTCGATGACCCAGCACAATGTTGGAGCCTTGGTGGTCGTGAAACCTGGAGAGCAAAAATCTATTGCAGGAATCATAACAGAGAGAGATTATCTCAGGAAGATCATAGTGCAGGGAAGATCATCCAAGTCAACAAAGGTTGGGGATATCATGACCGAGGAGAACAAGCTTATCACTGTCACCCCTGACACCAAAGTTCTGCGGGCAATGCAGCTGATGACAGATAACCGAATTAGGCACATTCCAGTTATAGATGACAGGGGAATGCTTGGTATGGTATCCATTGGTGATGTGGTTCGTGCTGTGGTGAGTGAGCACCGAGAGGAGCTCGACCGCTTGAATGCTTTTATTCAAGGCGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

205

Amino Acids

22.59

Weight (kDa)

9.01

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	74 - 119	1.4e-07	CBS domain
CBS	PF00571	131 - 187	2.8e-14	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10860
fragaria_vesca	FvH4_3g22060 FvH4_3g32110 FvH4_3g41290
malus_domestica	MD03G1045900.v1.1 MD11G1048200.v1.1
prunus_persica	Prupe.6G037200_v2.0.a1
pyrus_communis	pycom11g03930
rosa_chinensis	RchiOBHm_Chr5g0074091
rosa_laevigata	RLG00000036454
rosa_multiflora	Rmu_sc0000573.1_g000069
rosa_roxburghii	Rroxscaffold_1G00007300
rosa_rugosa	Rorug03G0243100
rosa_samantha	Rh5DG495300 Rh5DG519500
rosa_wichuraiana	Rw5G045180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AciI	CCGC	5 cut(s)	96, 133, 454, 586, 609
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	181, 592, 605
AjnI	CCWGG	2 cut(s)	209, 298
AluBI	AGCT	3 cut(s)	421, 466, 580
AluI	AGCT	3 cut(s)	421, 466, 580
Alw21I	GWGCWC	3 cut(s)	13, 570, 582
ApeKI	GCWGC	2 cut(s)	122, 463
AspLEI	GCGC	1 cut(s)	224
AsuHPI	GGTGA	3 cut(s)	424, 551, 571
AsuII	TTCGAA	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	582
Bbv12I	GWGCWC	3 cut(s)	13, 570, 582
BbvI	GCAGC	2 cut(s)	109, 475
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	211, 300
BciVI	GTATCC	1 cut(s)	541
BfaI	CTAG	1 cut(s)	616
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	2 cut(s)	123, 464
BlsI	GCNGC	2 cut(s)	124, 465
Bme1390I	CCNGG	2 cut(s)	211, 300
BmiI	GGNNCC	2 cut(s)	208, 280
BmrFI	CCNGG	2 cut(s)	211, 300
BmsI	GCATC	1 cut(s)	235
BplI	GAGNNNNNCTC	4 cut(s)	330, 362, 564, 596
BpmI	CTGGAG	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	282, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	211, 300
BseDI	CCNNGG	2 cut(s)	282, 408
BseGI	GGATG	1 cut(s)	374
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	361
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	2 cut(s)	425, 590
BseXI	GCAGC	2 cut(s)	109, 475
BseYI	CCCAGC	1 cut(s)	264
BsgI	GTGCAG	2 cut(s)	108, 383
Bsh1285I	CGRYCG	1 cut(s)	586
BsiEI	CGRYCG	1 cut(s)	586
BsiHKAI	GWGCWC	3 cut(s)	13, 570, 582
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmI	GAATGC	2 cut(s)	522, 598
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	3 cut(s)	13, 570, 582
Bsp143I	GATC	2 cut(s)	354, 371
BspACI	CCGC	5 cut(s)	96, 133, 454, 586, 609
BspCNI	CTCAG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	208, 280
BspMI	ACCTGC	1 cut(s)	136
BspQI	GCTCTTC	1 cut(s)	135
BspT104I	TTCGAA	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	282, 408
BssMI	GATC	2 cut(s)	354, 371
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	211, 300
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	135
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	96, 133, 456
BstDEI	CTNAG	2 cut(s)	162, 347
BstF5I	GGATG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	2 cut(s)	357, 374
BstMBI	GATC	2 cut(s)	354, 371
BstMCI	CGRYCG	1 cut(s)	586
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 128, 460
BstNI	CCWGG	2 cut(s)	211, 300
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	209, 298
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	109, 475
BsuI	GTATCC	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	374
BtsIMutI	CAGTG	1 cut(s)	426
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	3 cut(s)	96, 133, 456
CciI	TCATGA	1 cut(s)	402
CfoI	GCGC	1 cut(s)	224
CviAII	CATG	2 cut(s)	65, 403
CviJI	RGCY	7 cut(s)	20, 94, 214, 281, 421, 466, 580
CviKI_1	RGCY	7 cut(s)	20, 94, 214, 281, 421, 466, 580
DdeI	CTNAG	2 cut(s)	162, 347
DpnI	GATC	2 cut(s)	356, 373
DpnII	GATC	2 cut(s)	354, 371
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	580
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	400
Eco53kI	GAGCTC	1 cut(s)	580
EcoICRI	GAGCTC	1 cut(s)	580
EcoRII	CCWGG	2 cut(s)	209, 298
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	68, 406
FaiI	YATR	8 cut(s)	66, 137, 243, 329, 359, 404, 503, 527
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	2 cut(s)	64, 402
FauI	CCCGC	3 cut(s)	103, 140, 447
Fnu4HI	GCNGC	2 cut(s)	123, 464
FokI	GGATG	1 cut(s)	361
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	2 cut(s)	123, 464
FspBI	CTAG	1 cut(s)	616
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	2 cut(s)	123, 464
GsaI	CCCAGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	321
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	68, 406
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	4 cut(s)	79, 116, 233, 324
HphI	GGTGA	3 cut(s)	424, 551, 571
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188III	TCNNGA	4 cut(s)	178, 292, 349, 403
Hpy8I	GTNNAC	1 cut(s)	384
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4V	TGCA	7 cut(s)	4, 53, 125, 170, 320, 364, 463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 128, 460
HpyF3I	CTNAG	2 cut(s)	162, 347
Hsp92II	CATG	2 cut(s)	68, 406
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	354, 371
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	3 cut(s)	8, 278, 577
Lsp1109I	GCAGC	2 cut(s)	109, 475
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	616
MaeIII	GTNAC	2 cut(s)	430, 611
MalI	GATC	2 cut(s)	356, 373
MboI	GATC	2 cut(s)	354, 371
MboII	GAAGA	3 cut(s)	152, 364, 381
MhlI	GDGCHC	3 cut(s)	13, 570, 582
MluCI	AATT	2 cut(s)	87, 483
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	93, 403, 568
MseI	TTAA	2 cut(s)	15, 252
MslI	CAYNNNNRTG	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	466
MspR9I	CCNGG	2 cut(s)	211, 300
Mva1269I	GAATGC	2 cut(s)	522, 598
MvaI	CCWGG	2 cut(s)	211, 300
MwoI	GCNNNNNNNGC	3 cut(s)	17, 128, 460
NdeII	GATC	2 cut(s)	354, 371
NlaIII	CATG	2 cut(s)	68, 406
NlaIV	GGNNCC	2 cut(s)	208, 280
NmuCI	GTSAC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	68
NspV	TTCGAA	1 cut(s)	153
PagI	TCATGA	1 cut(s)	402
PaqCI	CACCTGC	1 cut(s)	136
PciI	ACATGT	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	135
PctI	GAATGC	2 cut(s)	522, 598
PfeI	GAWTC	3 cut(s)	79, 233, 324
PkrI	GCNGC	2 cut(s)	124, 465
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PscI	ACATGT	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	209, 298
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	2 cut(s)	209, 298
PspN4I	GGNNCC	2 cut(s)	208, 280
PvuII	CAGCTG	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	582
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	15, 252
SatI	GCNGC	2 cut(s)	123, 464
Sau3AI	GATC	2 cut(s)	354, 371
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	211, 300
SduI	GDGCHC	3 cut(s)	13, 570, 582
SetI	ASST	9 cut(s)	130, 151, 193, 199, 301, 393, 423, 468, 582
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	2 cut(s)	87, 483
SsiI	CCGC	5 cut(s)	96, 133, 454, 586, 609
SspMI	CTAG	1 cut(s)	616
SstI	GAGCTC	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	209, 298
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	430
TaqI	TCGA	3 cut(s)	153, 257, 582
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	2 cut(s)	87, 483
TfiI	GAWTC	3 cut(s)	79, 233, 324
Tru1I	TTAA	2 cut(s)	15, 252
Tru9I	TTAA	2 cut(s)	15, 252
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	2 cut(s)	122, 463
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	433
XceI	RCATGY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	2 cut(s)	272, 541
XspI	CTAG	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.