FvH4_3g32110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015072
Physical Location & Seq
Reverse (-)
27364323 .. 27364961
639 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32110.t1

Sequence Viewer

Length: 639 bp
ATGGGCCTCGGCGGCAGCCCCTCCTCCTCCCCCGCCCGTCGTCGCCACCGCGCCTCCACCTCATCCTCCCTTGTTTTTAAAGAAGGCTCGACGCCGACGGTGGAGACGGCGAGGTGCTCAAACGCGAAGGAGAGAAGCGCGTTGCCGGCTAAAACGGCAACGTCTTCGCCGAAAACCTTGTGGTTGGTGGGTTTTCCACGGCGGAGGTTGTCGTTGTCCATGCACGGCAAGTCGTCATGGATCAGCGACATGGTGTGGATCATCTCGACAGTGCAGGCCGCTGGCCATCACCACGGACTCGTCGCCTCTGACAAGCTCGCACGCCGCGAGACACAAAACGGGTCGGACCCTCTTGCCTCCGGCAAGGGGAGAGTACCGCATTGCCTCGTGGATCGTGACCAGGTCTTTCAGCGACACGGTGGCGTCCAAGGCCCGATTGACAGACTCGACCTTCTCCACCATGTAAGTCTTGAAATTGAAACTAGGTTTTGTCGATTCTTCATTCACAGCGGACTCCTGCTTCGTCAGGATTGCTGCGACGGAGCTGCGACGGCGATTAGGGGGAGCGAAGGAAACGGGTCGGGTCGGGTGGAGGAGGAGGAGGAGAGATGGGGAGGGTCTGGATCGGTTCAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

22.99

Weight (kDa)

9.59

Isoelectric Point (pI)

58.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10860
fragaria_vesca FvH4_3g22060 FvH4_3g32110 FvH4_3g41290
malus_domestica MD03G1045900.v1.1 MD11G1048200.v1.1
prunus_persica Prupe.6G037200_v2.0.a1
pyrus_communis pycom11g03930
rosa_chinensis RchiOBHm_Chr5g0074091
rosa_laevigata RLG00000036454
rosa_multiflora Rmu_sc0000573.1_g000069
rosa_roxburghii Rroxscaffold_1G00007300
rosa_rugosa Rorug03G0243100
rosa_samantha Rh5DG495300 Rh5DG519500
rosa_wichuraiana Rw5G045180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 51, 125, 140, 327
AciI CCGC 8 cut(s) 12, 33, 49, 202, 279, 325, 377, 510
AclWI GGATC 4 cut(s) 248, 266, 399, 631
AcoI YGGCCR 1 cut(s) 283
AcyI GRCGYC 2 cut(s) 92, 423
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 366
AgsI TTSAA 3 cut(s) 473, 479, 632
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 2 cut(s) 316, 545
AluI AGCT 2 cut(s) 316, 545
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 2 cut(s) 98, 323
AlwI GGATC 4 cut(s) 248, 266, 399, 631
AoxI GGCC 4 cut(s) 4, 276, 283, 430
ApeKI GCWGC 3 cut(s) 15, 534, 545
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
AspLEI GCGC 2 cut(s) 53, 140
AspS9I GGNCC 3 cut(s) 4, 346, 431
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 346
BalI TGGCCA 1 cut(s) 285
BauI CACGAG 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 27, 521, 532
BccI CCATC 2 cut(s) 294, 603
BceAI ACGGC 5 cut(s) 123, 171, 215, 241, 567
BcgI CGANNNNNNTGC 4 cut(s) 147, 181, 527, 561
BciT130I CCWGG 1 cut(s) 401
BcoDI GTCTC 2 cut(s) 98, 323
BfaI CTAG 1 cut(s) 483
BglI GCCNNNNNGGC 1 cut(s) 12
BisI GCNGC 6 cut(s) 13, 16, 279, 325, 535, 546
BlsI GCNGC 6 cut(s) 14, 17, 280, 326, 536, 547
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 3 cut(s) 4, 346, 431
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 156
BsaHI GRCGYC 2 cut(s) 92, 423
BsaJI CCNNGG 4 cut(s) 7, 197, 292, 427
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse118I RCCGGY 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 379
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 4 cut(s) 7, 197, 292, 427
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMI GCAATG 1 cut(s) 379
BseRI GAGGAG 6 cut(s) 13, 16, 608, 611, 614, 617
BseXI GCAGC 3 cut(s) 27, 521, 532
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 4 cut(s) 51, 125, 140, 327
BshFI GGCC 4 cut(s) 6, 278, 285, 432
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 146, 360
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 2 cut(s) 98, 323
BsmBI CGTCTC 1 cut(s) 98
BsnI GGCC 4 cut(s) 6, 278, 285, 432
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 4 cut(s) 240, 258, 391, 623
BspACI CCGC 8 cut(s) 12, 33, 49, 202, 279, 325, 377, 510
BspANI GGCC 4 cut(s) 6, 278, 285, 432
BspFNI CGCG 4 cut(s) 51, 125, 140, 327
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 4 cut(s) 248, 266, 399, 631
BsrDI GCAATG 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 4 cut(s) 7, 197, 292, 427
BssMI GATC 4 cut(s) 240, 258, 391, 623
BssNI GRCGYC 2 cut(s) 92, 423
BssSI CACGAG 1 cut(s) 386
BssT1I CCWWGG 1 cut(s) 427
Bst2BI CACGAG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 3 cut(s) 100, 271, 419
BstACI GRCGYC 2 cut(s) 92, 423
BstC8I GCNNGC 5 cut(s) 147, 276, 283, 318, 322
BstDSI CCRYGG 2 cut(s) 197, 292
BstF5I GGATG 1 cut(s) 62
BstFNI CGCG 4 cut(s) 51, 125, 140, 327
BstHHI GCGC 2 cut(s) 53, 140
BstKTI GATC 4 cut(s) 243, 261, 394, 626
BstMAI GTCTC 2 cut(s) 98, 323
BstMBI GATC 4 cut(s) 240, 258, 391, 623
BstMWI GCNNNNNNNGC 5 cut(s) 12, 146, 155, 429, 551
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BstUI CGCG 4 cut(s) 51, 125, 140, 327
BstV1I GCAGC 3 cut(s) 27, 521, 532
BstV2I GAAGAC 1 cut(s) 156
BsuRI GGCC 4 cut(s) 6, 278, 285, 432
BtgI CCRYGG 2 cut(s) 197, 292
BtsCI GGATG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 5 cut(s) 147, 276, 283, 318, 322
CfoI GCGC 2 cut(s) 53, 140
Cfr10I RCCGGY 1 cut(s) 145
Cfr13I GGNCC 3 cut(s) 4, 346, 431
CseI GACGC 2 cut(s) 100, 412
CsiI ACCWGGT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 374
CviAII CATG 4 cut(s) 220, 237, 250, 461
CviJI RGCY 9 cut(s) 6, 18, 87, 149, 278, 285, 316, 432, 545
CviKI_1 RGCY 9 cut(s) 6, 18, 87, 149, 278, 285, 316, 432, 545
CviQI GTAC 1 cut(s) 374
DpnI GATC 4 cut(s) 242, 260, 393, 625
DpnII GATC 4 cut(s) 240, 258, 391, 623
DraI TTTAAA 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 283
EciI GGCGGA 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 399
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 4 cut(s) 223, 240, 253, 464
FaiI YATR 4 cut(s) 221, 238, 251, 462
FatI CATG 4 cut(s) 219, 236, 249, 460
FauI CCCGC 1 cut(s) 40
Fnu4HI GCNGC 6 cut(s) 13, 16, 279, 325, 535, 546
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 6 cut(s) 13, 16, 279, 325, 535, 546
FspBI CTAG 1 cut(s) 483
GlaI GCGC 2 cut(s) 52, 139
GluI GCNGC 6 cut(s) 13, 16, 279, 325, 535, 546
HaeIII GGCC 4 cut(s) 6, 278, 285, 432
HapII CCGG 2 cut(s) 146, 360
HgaI GACGC 2 cut(s) 100, 412
HhaI GCGC 2 cut(s) 53, 140
Hin1I GRCGYC 2 cut(s) 92, 423
Hin1II CATG 4 cut(s) 223, 240, 253, 464
Hin6I GCGC 2 cut(s) 51, 138
HinP1I GCGC 2 cut(s) 51, 138
HinfI GANTC 4 cut(s) 297, 444, 495, 513
HpaII CCGG 2 cut(s) 146, 360
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 310, 346
Hpy188III TCNNGA 5 cut(s) 265, 395, 470, 527, 621
Hpy99I CGWCG 7 cut(s) 42, 45, 94, 100, 305, 542, 553
HpyAV CCTTC 4 cut(s) 77, 121, 461, 563
HpyCH4III ACNGT 3 cut(s) 100, 271, 419
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 223, 274
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 146, 155, 429, 551
HpySE526I ACGT 1 cut(s) 161
Hsp92I GRCGYC 2 cut(s) 92, 423
Hsp92II CATG 4 cut(s) 223, 240, 253, 464
HspAI GCGC 2 cut(s) 51, 138
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
Kzo9I GATC 4 cut(s) 240, 258, 391, 623
LmnI GCTCC 2 cut(s) 542, 564
LpnPI CCDG 9 cut(s) 159, 260, 267, 373, 386, 413, 512, 530, 606
Lsp1109I GCAGC 3 cut(s) 27, 521, 532
MabI ACCWGGT 1 cut(s) 399
MaeI CTAG 1 cut(s) 483
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 395
MalI GATC 4 cut(s) 242, 260, 393, 625
MboI GATC 4 cut(s) 240, 258, 391, 623
MboII GAAGA 2 cut(s) 156, 490
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 1 cut(s) 474
MluNI TGGCCA 1 cut(s) 285
MlyI GAGTC 3 cut(s) 291, 438, 507
MmeI TCCRAC 1 cut(s) 324
Mox20I TGGCCA 1 cut(s) 285
MroNI GCCGGC 1 cut(s) 145
MscI TGGCCA 1 cut(s) 285
MseI TTAA 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 285
MspA1I CMGCKG 2 cut(s) 281, 510
MspI CCGG 2 cut(s) 146, 360
MspR9I CCNGG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 401
MvnI CGCG 4 cut(s) 51, 125, 140, 327
MwoI GCNNNNNNNGC 5 cut(s) 12, 146, 155, 429, 551
NaeI GCCGGC 1 cut(s) 147
NdeII GATC 4 cut(s) 240, 258, 391, 623
NgoMIV GCCGGC 1 cut(s) 145
NlaIII CATG 4 cut(s) 223, 240, 253, 464
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 395
PcsI WCGNNNNNNNCGW 2 cut(s) 167, 324
PdiI GCCGGC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 495
PflFI GACNNNGTC 1 cut(s) 401
PkrI GCNGC 6 cut(s) 14, 17, 280, 326, 536, 547
PleI GAGTC 3 cut(s) 291, 438, 507
PpsI GAGTC 3 cut(s) 291, 438, 507
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 3 cut(s) 4, 346, 431
PsyI GACNNNGTC 1 cut(s) 401
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 6 cut(s) 13, 16, 279, 325, 535, 546
Sau3AI GATC 4 cut(s) 240, 258, 391, 623
Sau96I GGNCC 3 cut(s) 4, 346, 431
SchI GAGTC 3 cut(s) 291, 438, 507
ScrFI CCNGG 1 cut(s) 401
SduI GDGCHC 1 cut(s) 119
SexAI ACCWGGT 1 cut(s) 399
SinI GGWCC 1 cut(s) 346
Sse9I AATT 1 cut(s) 474
SsiI CCGC 8 cut(s) 12, 33, 49, 202, 279, 325, 377, 510
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 3 cut(s) 100, 271, 419
TaiI ACGT 1 cut(s) 164
TaqI TCGA 4 cut(s) 89, 266, 447, 493
TasI AATT 1 cut(s) 474
TauI GCSGC 3 cut(s) 15, 281, 327
TfiI GAWTC 1 cut(s) 495
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 3 cut(s) 15, 534, 545
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 490
TspGWI ACGGA 2 cut(s) 309, 555
TspRI CASTG 1 cut(s) 276
Tth111I GACNNNGTC 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 346
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.