Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015072

Physical Location & Seq

Genomic Coordinates Forward (+)

3703390 .. 3706416

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1045900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTGCAGGACGCAGTTCCATTTGTGGTGTGTTTGGCTTCCAAGAAACTACCGTATACAGGTAAAATGCAAGGAGTACTCAAAACTTTTACATCACACGGAAGCATTGTGAAAAATGGAGTTTTGAGACACATCCGTCTTGTGAATCCCCTGCTCCAGCCTGTTGCGTTTTCACGTTTTGAGTCTGCTACGCCTGCCAATGCCCACATAGAAGAGCAGGGTTTTGAAAGCACCAGAATTGCAGATGTCTTGAATGCAAAAGGTAAAGGTGCTGATGGTTCCTGGCTCTGGTGCACAACCGATGACTCTGTTTATGATGCTGTTAAGTCGATGATCCAGCACAATGTTGGAGCCTTAGTTGTTGTGAAATCCGGAGAGCAAAAATCTCCCGCAGGAATCATAACAGAGAGAGATTATCTCAGGAAGATCATAGTTCAGGGAAGATCATCCAAGTCAACAAAAGTTGGGGATATCATGACTGAGGAGAACAAGCTTATCACTGTCACCCCTGACACCAAAGTTTTGTGGGCAATGCAACTCATGACAGATAACCGAATCAGGCACATTCCAGTAATGGACAACGGGAAAATGGTTGGAATGGTGTCCATTGGTGACGTGGTTCGTGCTGTGGTGAGTGAGCACCGGGAGGAGCTAAACCGCTTGAATGCTTTTATTCAAGGTGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

230

Amino Acids

25.22

Weight (kDa)

9.2

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	97 - 143	7.2e-08	CBS domain
CBS	PF00571	155 - 211	9.7e-15	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10860
fragaria_vesca	FvH4_3g22060 FvH4_3g32110 FvH4_3g41290
malus_domestica	MD03G1045900.v1.1 MD11G1048200.v1.1
prunus_persica	Prupe.6G037200_v2.0.a1
pyrus_communis	pycom11g03930
rosa_chinensis	RchiOBHm_Chr5g0074091
rosa_laevigata	RLG00000036454
rosa_multiflora	Rmu_sc0000573.1_g000069
rosa_roxburghii	Rroxscaffold_1G00007300
rosa_rugosa	Rorug03G0243100
rosa_samantha	Rh5DG495300 Rh5DG519500
rosa_wichuraiana	Rw5G045180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	371
AciI	CCGC	2 cut(s)	390, 658
AclWI	GGATC	1 cut(s)	328
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	59, 288
AgsI	TTSAA	4 cut(s)	227, 253, 664, 677
AjiI	CACGTC	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	493, 652
AluI	AGCT	2 cut(s)	493, 652
Alw21I	GWGCWC	2 cut(s)	296, 642
Alw26I	GTCTC	1 cut(s)	121
Alw44I	GTGCAC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	328
Aor13HI	TCCGGA	1 cut(s)	371
ApaLI	GTGCAC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	3 cut(s)	496, 623, 643
BaeGI	GKGCMC	1 cut(s)	296
Bbv12I	GWGCWC	2 cut(s)	296, 642
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	1 cut(s)	688
BmcAI	AGTACT	1 cut(s)	78
Bme1390I	CCNGG	2 cut(s)	283, 644
BmgBI	CACGTC	1 cut(s)	616
BmiI	GGNNCC	2 cut(s)	280, 352
BmrFI	CCNGG	2 cut(s)	283, 644
BmsI	GCATC	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	402, 434
BpmI	CTGGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	644
BsaWI	WCCGGW	1 cut(s)	371
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 288
Bse1I	ACTGG	1 cut(s)	569
Bse3DI	GCAATG	1 cut(s)	537
BseAI	TCCGGA	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	283
BseGI	GGATG	2 cut(s)	132, 446
BseLI	CCNNNNNNNGG	2 cut(s)	59, 288
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	2 cut(s)	433, 471
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	2 cut(s)	497, 662
BseSI	GKGCMC	1 cut(s)	296
BsiHKAI	GWGCWC	2 cut(s)	296, 642
BsiSI	CCGG	2 cut(s)	372, 643
BslI	CCNNNNNNNGG	2 cut(s)	59, 288
BsmAI	GTCTC	1 cut(s)	121
BsmI	GAATGC	2 cut(s)	259, 670
Bsp1286I	GDGCHC	2 cut(s)	296, 642
Bsp13I	TCCGGA	1 cut(s)	371
Bsp143I	GATC	3 cut(s)	333, 426, 443
BspACI	CCGC	2 cut(s)	390, 658
BspCNI	CTCAG	2 cut(s)	432, 472
BspEI	TCCGGA	1 cut(s)	371
BspHI	TCATGA	2 cut(s)	474, 540
BspLI	GGNNCC	2 cut(s)	280, 352
BspPI	GGATC	1 cut(s)	328
BspQI	GCTCTTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	569
BssMI	GATC	3 cut(s)	333, 426, 443
BssNAI	GTATAC	1 cut(s)	57
Bst1107I	GTATAC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	54, 502
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	3 cut(s)	355, 419, 480
BstF5I	GGATG	2 cut(s)	132, 446
BstKTI	GATC	3 cut(s)	336, 429, 446
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	3 cut(s)	333, 426, 443
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	281, 642
BstSLI	GKGCMC	1 cut(s)	296
BstZ17I	GTATAC	1 cut(s)	57
BtrI	CACGTC	1 cut(s)	616
BtsCI	GGATG	2 cut(s)	132, 446
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	195
CciI	TCATGA	2 cut(s)	474, 540
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	2 cut(s)	475, 541
CviJI	RGCY	6 cut(s)	38, 160, 286, 353, 493, 652
CviKI_1	RGCY	6 cut(s)	38, 160, 286, 353, 493, 652
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	3 cut(s)	355, 419, 480
DpnI	GATC	3 cut(s)	335, 428, 445
DpnII	GATC	3 cut(s)	333, 426, 443
DrdI	GACNNNNNNGTC	1 cut(s)	135
DseDI	GACNNNNNNGTC	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	281
EcoRV	GATATC	1 cut(s)	472
FaeI	CATG	2 cut(s)	478, 544
FaiI	YATR	7 cut(s)	57, 209, 315, 401, 431, 476, 542
FatI	CATG	2 cut(s)	474, 540
FauI	CCCGC	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	56
FokI	GGATG	2 cut(s)	119, 433
FspBI	CTAG	1 cut(s)	688
GsuI	CTGGAG	1 cut(s)	140
HapII	CCGG	2 cut(s)	372, 643
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	478, 544
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	5 cut(s)	145, 182, 305, 396, 555
HpaII	CCGG	2 cut(s)	372, 643
HphI	GGTGA	3 cut(s)	496, 623, 643
Hpy166II	GTNNAC	3 cut(s)	57, 294, 456
Hpy188III	TCNNGA	5 cut(s)	250, 372, 421, 475, 541
Hpy8I	GTNNAC	3 cut(s)	57, 294, 456
HpyCH4III	ACNGT	2 cut(s)	54, 502
HpyCH4IV	ACGT	2 cut(s)	175, 615
HpyCH4V	TGCA	6 cut(s)	7, 70, 242, 257, 294, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	3 cut(s)	355, 419, 480
HpySE526I	ACGT	2 cut(s)	175, 615
Hsp92II	CATG	2 cut(s)	478, 544
Kpn2I	TCCGGA	1 cut(s)	371
Kzo9I	GATC	3 cut(s)	333, 426, 443
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	3 cut(s)	159, 350, 649
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	688
MaeII	ACGT	2 cut(s)	175, 615
MaeIII	GTNAC	3 cut(s)	502, 611, 683
MalI	GATC	3 cut(s)	335, 428, 445
MboI	GATC	3 cut(s)	333, 426, 443
MboII	GAAGA	3 cut(s)	224, 436, 453
MhlI	GDGCHC	2 cut(s)	296, 642
MluCI	AATT	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	191, 299
MmeI	TCCRAC	2 cut(s)	328, 574
MnlI	CCTC	2 cut(s)	475, 640
MroI	TCCGGA	1 cut(s)	371
MseI	TTAA	1 cut(s)	324
MspI	CCGG	2 cut(s)	372, 643
MspR9I	CCNGG	2 cut(s)	283, 644
Mva1269I	GAATGC	2 cut(s)	259, 670
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	644
NdeII	GATC	3 cut(s)	333, 426, 443
NlaIII	CATG	2 cut(s)	478, 544
NlaIV	GGNNCC	2 cut(s)	280, 352
NmuCI	GTSAC	2 cut(s)	502, 611
PagI	TCATGA	2 cut(s)	474, 540
PciSI	GCTCTTC	1 cut(s)	207
PctI	GAATGC	2 cut(s)	259, 670
PfeI	GAWTC	3 cut(s)	145, 396, 555
PleI	GAGTC	2 cut(s)	190, 299
PpsI	GAGTC	2 cut(s)	190, 299
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	280, 352
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	3 cut(s)	333, 426, 443
ScaI	AGTACT	1 cut(s)	78
SchI	GAGTC	2 cut(s)	191, 299
ScrFI	CCNGG	2 cut(s)	283, 644
SduI	GDGCHC	2 cut(s)	296, 642
SetI	ASST	8 cut(s)	64, 178, 265, 271, 495, 618, 654, 682
SfaNI	GCATC	1 cut(s)	307
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	2 cut(s)	390, 658
SspMI	CTAG	1 cut(s)	688
StyD4I	CCNGG	2 cut(s)	281, 642
TaaI	ACNGT	2 cut(s)	54, 502
TaiI	ACGT	2 cut(s)	178, 618
TaqI	TCGA	1 cut(s)	329
TasI	AATT	1 cut(s)	237
TatI	WGTACW	1 cut(s)	76
TfiI	GAWTC	3 cut(s)	145, 396, 555
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	2 cut(s)	502, 611
Tsp45I	GTSAC	2 cut(s)	502, 611
TspGWI	ACGGA	2 cut(s)	114, 125
TspRI	CASTG	1 cut(s)	505
VneI	GTGCAC	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	2 cut(s)	344, 613
XmiI	GTMKAC	1 cut(s)	56
XspI	CTAG	1 cut(s)	688
ZrmI	AGTACT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.