Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015072

Physical Location & Seq

Genomic Coordinates Forward (+)

2811701 .. 2814726

Gene Structure 3026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G037200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCAAGGAGCATTTAAAGCTTTTTCATCACATGGAAACATTGTGAAGAATGGAGTTTTGCGACACATCCGTCTTGTGAATCCCCTAATTCAGCCTGTTGCATTTTCACGCTTTGAGTCTGCTACGCCTGCTCGCATAGAAGAGCATGGTTTTGAAAGCACCAGAATTGCAGACATCTTGAAGGGGAAAGGTAAAGGTGCTGACGGTTCCTGGCTCTGGTGCACGACAGATGACTCTGTTTATGATGCTGTTAAGTCGATGACCCAGCACAACGTTGGGGCCTTGGTGGTTGTGAAACCTGGAGAGCAAAAATCTATCGCAGGAATCATAACAGAGAGAGATTATCTCAGGAAGATCATAGTGCAGGGAAGATCATCCAAGTCAACAAAGGTCGGGGATATTATGACTGAGGAGAACAAGCTTATCACTGTCACCCCTGACACCAAAGTTCTACGGGCAATGCAATTGATGACAGATAACCGAATCAGGCACATTCCAGTAATAGATGACAGGGGAATGATTGGAATGGTGTCCATTGGCGATGTGGTTCGTGCTGTGGTGAGTGAGCACCGGGAGGAGCTAGACCGCCTGAATGCTTATATTCAAGGAGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

206

Amino Acids

22.7

Weight (kDa)

9.21

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10860
fragaria_vesca	FvH4_3g22060 FvH4_3g32110 FvH4_3g41290
malus_domestica	MD03G1045900.v1.1 MD11G1048200.v1.1
prunus_persica	Prupe.6G037200_v2.0.a1
pyrus_communis	pycom11g03930
rosa_chinensis	RchiOBHm_Chr5g0074091
rosa_laevigata	RLG00000036454
rosa_multiflora	Rmu_sc0000573.1_g000069
rosa_roxburghii	Rroxscaffold_1G00007300
rosa_rugosa	Rorug03G0243100
rosa_samantha	Rh5DG495300 Rh5DG519500
rosa_wichuraiana	Rw5G045180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	69
AciI	CCGC	1 cut(s)	586
AclI	AACGTT	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	3 cut(s)	155, 181, 605
AjnI	CCWGG	2 cut(s)	209, 298
AluBI	AGCT	3 cut(s)	20, 421, 580
AluI	AGCT	3 cut(s)	20, 421, 580
Alw21I	GWGCWC	2 cut(s)	224, 570
Alw44I	GTGCAC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	279
ApaLI	GTGCAC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	279
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	2 cut(s)	424, 571
BaeGI	GKGCMC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	224, 570
BciT130I	CCWGG	2 cut(s)	211, 300
BcnI	CCSGG	1 cut(s)	572
BfaI	CTAG	2 cut(s)	581, 616
Bme1390I	CCNGG	3 cut(s)	211, 300, 572
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	208, 280
BmrFI	CCNGG	3 cut(s)	211, 300, 572
BmsI	GCATC	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	330, 362
BpmI	CTGGAG	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	211, 300
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	66, 374
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	361, 399
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	2 cut(s)	425, 590
BseSI	GKGCMC	1 cut(s)	224
BseYI	CCCAGC	1 cut(s)	264
BsgI	GTGCAG	1 cut(s)	383
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	224, 570
BsiSI	CCGG	1 cut(s)	571
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	224, 570
Bsp143I	GATC	2 cut(s)	354, 371
BspACI	CCGC	1 cut(s)	586
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	2 cut(s)	360, 400
BspLI	GGNNCC	2 cut(s)	208, 280
BspQI	GCTCTTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	354, 371
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	211, 300
Bst4CI	ACNGT	2 cut(s)	206, 430
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	129, 133
BstDEI	CTNAG	2 cut(s)	347, 408
BstF5I	GGATG	2 cut(s)	66, 374
BstKTI	GATC	2 cut(s)	357, 374
BstMBI	GATC	2 cut(s)	354, 371
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 128
BstNI	CCWGG	2 cut(s)	211, 300
BstSCI	CCNGG	3 cut(s)	209, 298, 570
BstSLI	GKGCMC	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	281
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	66, 374
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	129, 133
Cfr13I	GGNCC	1 cut(s)	279
CviAII	CATG	2 cut(s)	32, 146
CviJI	RGCY	6 cut(s)	20, 94, 214, 281, 421, 580
CviKI_1	RGCY	6 cut(s)	20, 94, 214, 281, 421, 580
DdeI	CTNAG	2 cut(s)	347, 408
DpnI	GATC	2 cut(s)	356, 373
DpnII	GATC	2 cut(s)	354, 371
DraI	TTTAAA	1 cut(s)	16
DrdI	GACNNNNNNGTC	1 cut(s)	69
DseDI	GACNNNNNNGTC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	209, 298
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	35, 149
FaiI	YATR	8 cut(s)	33, 137, 147, 243, 329, 359, 404, 600
FatI	CATG	2 cut(s)	31, 145
FokI	GGATG	2 cut(s)	53, 361
FspBI	CTAG	2 cut(s)	581, 616
GsaI	CCCAGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	571
Hin1II	CATG	2 cut(s)	35, 149
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HindIII	AAGCTT	2 cut(s)	18, 419
HinfI	GANTC	5 cut(s)	79, 116, 233, 324, 483
HpaII	CCGG	1 cut(s)	571
HphI	GGTGA	2 cut(s)	424, 571
Hpy166II	GTNNAC	2 cut(s)	222, 384
Hpy188III	TCNNGA	2 cut(s)	178, 349
Hpy8I	GTNNAC	2 cut(s)	222, 384
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	2 cut(s)	206, 430
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	6 cut(s)	4, 101, 170, 222, 364, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 128
HpyF3I	CTNAG	2 cut(s)	347, 408
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	35, 149
Kzo9I	GATC	2 cut(s)	354, 371
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	2 cut(s)	8, 577
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	581, 616
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	430, 611
MalI	GATC	2 cut(s)	356, 373
MboI	GATC	2 cut(s)	354, 371
MboII	GAAGA	4 cut(s)	58, 152, 364, 381
MfeI	CAATTG	1 cut(s)	464
MhlI	GDGCHC	2 cut(s)	224, 570
MluCI	AATT	3 cut(s)	87, 165, 464
MlyI	GAGTC	2 cut(s)	125, 227
MnlI	CCTC	3 cut(s)	403, 568, 602
MseI	TTAA	2 cut(s)	15, 252
MspI	CCGG	1 cut(s)	571
MspR9I	CCNGG	3 cut(s)	211, 300, 572
MunI	CAATTG	1 cut(s)	464
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	2 cut(s)	211, 300
MwoI	GCNNNNNNNGC	2 cut(s)	17, 128
NciI	CCSGG	1 cut(s)	572
NdeII	GATC	2 cut(s)	354, 371
NlaIII	CATG	2 cut(s)	35, 149
NlaIV	GGNNCC	2 cut(s)	208, 280
NmuCI	GTSAC	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	135
PctI	GAATGC	1 cut(s)	598
PfeI	GAWTC	3 cut(s)	79, 324, 483
PleI	GAGTC	2 cut(s)	124, 227
PpsI	GAGTC	2 cut(s)	124, 227
Psp1406I	AACGTT	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	209, 298
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	2 cut(s)	209, 298
PspN4I	GGNNCC	2 cut(s)	208, 280
PspPI	GGNCC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	15, 252
Sau3AI	GATC	2 cut(s)	354, 371
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	2 cut(s)	125, 227
ScrFI	CCNGG	3 cut(s)	211, 300, 572
SduI	GDGCHC	2 cut(s)	224, 570
SetI	ASST	9 cut(s)	22, 193, 199, 276, 301, 393, 423, 582, 613
SfaNI	GCATC	1 cut(s)	235
Sse9I	AATT	3 cut(s)	87, 165, 464
SsiI	CCGC	1 cut(s)	586
SspMI	CTAG	2 cut(s)	581, 616
StyD4I	CCNGG	3 cut(s)	209, 298, 570
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	206, 430
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	257
TasI	AATT	3 cut(s)	87, 165, 464
TfiI	GAWTC	3 cut(s)	79, 324, 483
Tru1I	TTAA	2 cut(s)	15, 252
Tru9I	TTAA	2 cut(s)	15, 252
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	433
VneI	GTGCAC	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	2 cut(s)	272, 541
XspI	CTAG	2 cut(s)	581, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.