Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi trans-Golgi network (TGN) and or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G11490 AT5G11490 AT5G11490 |
| fragaria_vesca | FvH4_2g36170 FvH4_2g36170 FvH4_2g36170 |
| malus_domestica | MD08G1118900.v1.1 MD15G1098200.v1.1 |
| prunus_persica | Prupe.1G453100_v2.0.a1 |
| pyrus_communis | pycom08g09930 pycom15g09000 |
| rosa_chinensis | RchiOBHm_Chr6g0305701 |
| rosa_laevigata | RLG00000010867 |
| rosa_multiflora | Rmu_sc0001809.1_g000035 |
| rosa_roxburghii | Rroxscaffold_7G00162430 |
| rosa_rugosa | Rorug06G0343300 |
| rosa_samantha | Rh6AG454800 Rh6BG446700 Rh6CG468700 Rh6DG455300 |
| rosa_wichuraiana | Rw6G039660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 183 |
| Acc36I | ACCTGC | 1 cut(s) | 1932 |
| AccB1I | GGYRCC | 3 cut(s) | 1549, 2189, 2208 |
| AccBSI | CCGCTC | 2 cut(s) | 426, 2126 |
| AccII | CGCG | 1 cut(s) | 2264 |
| AclI | AACGTT | 2 cut(s) | 533, 1152 |
| AclWI | GGATC | 3 cut(s) | 340, 704, 2177 |
| AcoI | YGGCCR | 1 cut(s) | 12 |
| AcsI | RAATTY | 3 cut(s) | 603, 704, 2510 |
| AcuI | CTGAAG | 3 cut(s) | 33, 257, 1890 |
| AcvI | CACGTG | 1 cut(s) | 1666 |
| AcyI | GRCGYC | 3 cut(s) | 180, 2190, 2209 |
| AdeI | CACNNNGTG | 1 cut(s) | 2406 |
| AfaI | GTAC | 5 cut(s) | 161, 477, 1043, 1662, 2467 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 631, 649, 1503 |
| AflIII | ACRYGT | 4 cut(s) | 1663, 1675, 1797, 2468 |
| AjnI | CCWGG | 5 cut(s) | 112, 1377, 1608, 2185, 2253 |
| AleI | CACNNNNGTG | 1 cut(s) | 2236 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 358, 390 |
| Alw21I | GWGCWC | 2 cut(s) | 112, 215 |
| Alw26I | GTCTC | 2 cut(s) | 187, 1550 |
| AlwI | GGATC | 3 cut(s) | 340, 704, 2177 |
| AoxI | GGCC | 4 cut(s) | 12, 1992, 2053, 2265 |
| ApeKI | GCWGC | 6 cut(s) | 811, 1013, 1145, 1365, 1586, 2174 |
| ApoI | RAATTY | 3 cut(s) | 603, 704, 2510 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1733, 1765 |
| AseI | ATTAAT | 1 cut(s) | 306 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1855 |
| AspA2I | CCTAGG | 1 cut(s) | 1570 |
| AspLEI | GCGC | 3 cut(s) | 1000, 2192, 2211 |
| AspS9I | GGNCC | 7 cut(s) | 337, 413, 1303, 1823, 1921, 1993, 2054 |
| AsuC2I | CCSGG | 1 cut(s) | 644 |
| AsuHPI | GGTGA | 5 cut(s) | 27, 489, 1430, 1598, 2136 |
| AsuNHI | GCTAGC | 1 cut(s) | 94 |
| AvaII | GGWCC | 5 cut(s) | 337, 413, 1303, 1823, 1921 |
| AvrII | CCTAGG | 1 cut(s) | 1570 |
| BaeGI | GKGCMC | 2 cut(s) | 721, 1552 |
| BanI | GGYRCC | 3 cut(s) | 1549, 2189, 2208 |
| BanII | GRGCYC | 2 cut(s) | 112, 432 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1290, 1322, 1778, 1810 |
| BbrPI | CACGTG | 1 cut(s) | 1666 |
| BbsI | GAAGAC | 1 cut(s) | 807 |
| Bbv12I | GWGCWC | 2 cut(s) | 112, 215 |
| BbvI | GCAGC | 6 cut(s) | 823, 1000, 1132, 1377, 1573, 2161 |
| BccI | CCATC | 7 cut(s) | 196, 1060, 1252, 1798, 1868, 2149, 2395 |
| BceAI | ACGGC | 2 cut(s) | 742, 2007 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 509, 543 |
| BciT130I | CCWGG | 5 cut(s) | 114, 1379, 1610, 2187, 2255 |
| BciVI | GTATCC | 1 cut(s) | 1329 |
| BcnI | CCSGG | 1 cut(s) | 644 |
| BcoDI | GTCTC | 2 cut(s) | 187, 1550 |
| BfaI | CTAG | 4 cut(s) | 95, 1571, 1583, 1931 |
| BfmI | CTRYAG | 3 cut(s) | 809, 1014, 1587 |
| BfoI | RGCGCY | 2 cut(s) | 2193, 2212 |
| BfuAI | ACCTGC | 1 cut(s) | 1932 |
| BfuI | GTATCC | 1 cut(s) | 1329 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1397 |
| BglII | AGATCT | 1 cut(s) | 70 |
| BlnI | CCTAGG | 1 cut(s) | 1570 |
| BlpI | GCTNAGC | 2 cut(s) | 662, 1896 |
| BmcAI | AGTACT | 1 cut(s) | 477 |
| Bme1390I | CCNGG | 6 cut(s) | 114, 644, 1379, 1610, 2187, 2255 |
| Bme18I | GGWCC | 5 cut(s) | 337, 413, 1303, 1823, 1921 |
| BmgT120I | GGNCC | 7 cut(s) | 337, 413, 1303, 1823, 1921, 1993, 2054 |
| BmrFI | CCNGG | 6 cut(s) | 114, 644, 1379, 1610, 2187, 2255 |
| BmrI | ACTGGG | 1 cut(s) | 1486 |
| BmsI | GCATC | 5 cut(s) | 505, 537, 553, 1432, 2336 |
| BmtI | GCTAGC | 1 cut(s) | 98 |
| BmuI | ACTGGG | 1 cut(s) | 1486 |
| BpiI | GAAGAC | 1 cut(s) | 807 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1429, 1461 |
| BpmI | CTGGAG | 4 cut(s) | 96, 492, 1274, 1861 |
| Bpu10I | CCTNAGC | 1 cut(s) | 567 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 662, 1896 |
| BpuEI | CTTGAG | 4 cut(s) | 416, 755, 988, 1097 |
| BpuMI | CCSGG | 1 cut(s) | 644 |
| BsaAI | YACGTR | 2 cut(s) | 1666, 2469 |
| BsaBI | GATNNNNATC | 1 cut(s) | 885 |
| BsaHI | GRCGYC | 3 cut(s) | 180, 2190, 2209 |
| BsaJI | CCNNGG | 8 cut(s) | 349, 417, 1392, 1497, 1570, 1819, 2253, 2254 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 189, 219, 358, 388, 816, 846 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 631, 649, 1503 |
| Bse1I | ACTGG | 4 cut(s) | 475, 671, 1039, 1481 |
| Bse3DI | GCAATG | 2 cut(s) | 1533, 1593 |
| Bse8I | GATNNNNATC | 1 cut(s) | 885 |
| BseBI | CCWGG | 5 cut(s) | 114, 1379, 1610, 2187, 2255 |
| BseDI | CCNNGG | 8 cut(s) | 349, 417, 1392, 1497, 1570, 1819, 2253, 2254 |
| BseGI | GGATG | 4 cut(s) | 1416, 1618, 1954, 2063 |
| BseJI | GATNNNNATC | 1 cut(s) | 885 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 631, 649, 1503 |
| BseMI | GCAATG | 2 cut(s) | 1533, 1593 |
| BseMII | CTCAG | 8 cut(s) | 581, 621, 676, 1545, 1574, 1910, 2394, 2450 |
| BseNI | ACTGG | 4 cut(s) | 475, 671, 1039, 1481 |
| BseRI | GAGGAG | 2 cut(s) | 379, 2002 |
| BseSI | GKGCMC | 2 cut(s) | 721, 1552 |
| BseX3I | CGGCCG | 1 cut(s) | 12 |
| BseXI | GCAGC | 6 cut(s) | 823, 1000, 1132, 1377, 1573, 2161 |
| BseYI | CCCAGC | 1 cut(s) | 81 |
| BsgI | GTGCAG | 1 cut(s) | 576 |
| Bsh1236I | CGCG | 1 cut(s) | 2264 |
| Bsh1285I | CGRYCG | 1 cut(s) | 15 |
| BshFI | GGCC | 4 cut(s) | 14, 1994, 2055, 2267 |
| BshNI | GGYRCC | 3 cut(s) | 1549, 2189, 2208 |
| BsiEI | CGRYCG | 1 cut(s) | 15 |
| BsiHKAI | GWGCWC | 2 cut(s) | 112, 215 |
| BsiSI | CCGG | 3 cut(s) | 11, 643, 2052 |
| BslFI | GGGAC | 2 cut(s) | 25, 399 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 631, 649, 1503 |
| BsmAI | GTCTC | 2 cut(s) | 187, 1550 |
| BsmBI | CGTCTC | 1 cut(s) | 187 |
| BsmFI | GGGAC | 2 cut(s) | 25, 399 |
| BsmI | GAATGC | 2 cut(s) | 1489, 2477 |
| BsnI | GGCC | 4 cut(s) | 14, 1994, 2055, 2267 |
| Bsp1286I | GDGCHC | 5 cut(s) | 112, 215, 432, 721, 1552 |
| Bsp1407I | TGTACA | 1 cut(s) | 1660 |
| Bsp143I | GATC | 6 cut(s) | 70, 286, 345, 696, 2098, 2182 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 662, 1896 |
| BspANI | GGCC | 4 cut(s) | 14, 1994, 2055, 2267 |
| BspCNI | CTCAG | 8 cut(s) | 580, 622, 675, 1546, 1573, 1909, 2395, 2449 |
| BspFNI | CGCG | 1 cut(s) | 2264 |
| BspHI | TCATGA | 2 cut(s) | 553, 1618 |
| BspMAI | CTGCAG | 3 cut(s) | 813, 1018, 1591 |
| BspMI | ACCTGC | 1 cut(s) | 1932 |
| BspOI | GCTAGC | 1 cut(s) | 98 |
| BspPI | GGATC | 3 cut(s) | 340, 704, 2177 |
| BspQI | GCTCTTC | 1 cut(s) | 1479 |
| BspT107I | GGYRCC | 3 cut(s) | 1549, 2189, 2208 |
| BsrBI | CCGCTC | 2 cut(s) | 426, 2126 |
| BsrDI | GCAATG | 2 cut(s) | 1533, 1593 |
| BsrGI | TGTACA | 1 cut(s) | 1660 |
| BsrI | ACTGG | 4 cut(s) | 475, 671, 1039, 1481 |
| BssECI | CCNNGG | 8 cut(s) | 349, 417, 1392, 1497, 1570, 1819, 2253, 2254 |
| BssMI | GATC | 6 cut(s) | 70, 286, 345, 696, 2098, 2182 |
| BssNI | GRCGYC | 3 cut(s) | 180, 2190, 2209 |
| BssT1I | CCWWGG | 3 cut(s) | 417, 1392, 1570 |
| Bst2UI | CCWGG | 5 cut(s) | 114, 1379, 1610, 2187, 2255 |
| Bst4CI | ACNGT | 8 cut(s) | 39, 844, 1134, 1212, 1745, 2275, 2321, 2488 |
| Bst6I | CTCTTC | 1 cut(s) | 1479 |
| BstACI | GRCGYC | 3 cut(s) | 180, 2190, 2209 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1595, 2174 |
| BstAUI | TGTACA | 1 cut(s) | 1660 |
| BstBAI | YACGTR | 2 cut(s) | 1666, 2469 |
| BstDEI | CTNAG | 9 cut(s) | 567, 630, 662, 1310, 1554, 1560, 1896, 2403, 2436 |
| BstDSI | CCRYGG | 1 cut(s) | 349 |
| BstF5I | GGATG | 4 cut(s) | 1416, 1618, 1954, 2063 |
| BstFNI | CGCG | 1 cut(s) | 2264 |
| BstH2I | RGCGCY | 2 cut(s) | 2193, 2212 |
| BstHHI | GCGC | 3 cut(s) | 1000, 2192, 2211 |
| BstKTI | GATC | 6 cut(s) | 73, 289, 348, 699, 2101, 2185 |
| BstMAI | GTCTC | 2 cut(s) | 187, 1550 |
| BstMBI | GATC | 6 cut(s) | 70, 286, 345, 696, 2098, 2182 |
| BstMCI | CGRYCG | 1 cut(s) | 15 |
| BstNI | CCWGG | 5 cut(s) | 114, 1379, 1610, 2187, 2255 |
| BstNSI | RCATGY | 5 cut(s) | 510, 642, 818, 1801, 2302 |
| BstSCI | CCNGG | 6 cut(s) | 112, 642, 1377, 1608, 2185, 2253 |
| BstSFI | CTRYAG | 3 cut(s) | 809, 1014, 1587 |
| BstSLI | GKGCMC | 2 cut(s) | 721, 1552 |
| BstUI | CGCG | 1 cut(s) | 2264 |
| BstV1I | GCAGC | 6 cut(s) | 823, 1000, 1132, 1377, 1573, 2161 |
| BstV2I | GAAGAC | 1 cut(s) | 807 |
| BstX2I | RGATCY | 2 cut(s) | 70, 2182 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 98 |
| BstYI | RGATCY | 2 cut(s) | 70, 2182 |
| BstZI | CGGCCG | 1 cut(s) | 12 |
| BsuI | GTATCC | 1 cut(s) | 1329 |
| BsuRI | GGCC | 4 cut(s) | 14, 1994, 2055, 2267 |
| BtgI | CCRYGG | 1 cut(s) | 349 |
| BtsCI | GGATG | 4 cut(s) | 1416, 1618, 1954, 2063 |
| BtsI | GCAGTG | 1 cut(s) | 1735 |
| BtsIMutI | CAGTG | 3 cut(s) | 1735, 2317, 2400 |
| BveI | ACCTGC | 1 cut(s) | 1932 |
| CciI | TCATGA | 2 cut(s) | 553, 1618 |
| CfoI | GCGC | 3 cut(s) | 1000, 2192, 2211 |
| Cfr13I | GGNCC | 7 cut(s) | 337, 413, 1303, 1823, 1921, 1993, 2054 |
| Csp6I | GTAC | 5 cut(s) | 160, 476, 1042, 1661, 2466 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 378, 413 |
| CviQI | GTAC | 5 cut(s) | 160, 476, 1042, 1661, 2466 |
| DdeI | CTNAG | 9 cut(s) | 567, 630, 662, 1310, 1554, 1560, 1896, 2403, 2436 |
| DinI | GGCGCC | 2 cut(s) | 2191, 2210 |
| DpnI | GATC | 6 cut(s) | 72, 288, 347, 698, 2100, 2184 |
| DpnII | GATC | 6 cut(s) | 70, 286, 345, 696, 2098, 2182 |
| DraIII | CACNNNGTG | 1 cut(s) | 2406 |
| EaeI | YGGCCR | 1 cut(s) | 12 |
| EagI | CGGCCG | 1 cut(s) | 12 |
| Eam1104I | CTCTTC | 1 cut(s) | 1479 |
| EarI | CTCTTC | 1 cut(s) | 1479 |
| Ecl136II | GAGCTC | 1 cut(s) | 110 |
| EclXI | CGGCCG | 1 cut(s) | 12 |
| Eco130I | CCWWGG | 3 cut(s) | 417, 1392, 1570 |
| Eco24I | GRGCYC | 2 cut(s) | 112, 432 |
| Eco47I | GGWCC | 5 cut(s) | 337, 413, 1303, 1823, 1921 |
| Eco52I | CGGCCG | 1 cut(s) | 12 |
| Eco53kI | GAGCTC | 1 cut(s) | 110 |
| Eco57I | CTGAAG | 3 cut(s) | 33, 257, 1890 |
| Eco72I | CACGTG | 1 cut(s) | 1666 |
| EcoICRI | GAGCTC | 1 cut(s) | 110 |
| EcoO109I | RGGNCCY | 4 cut(s) | 337, 1303, 1823, 1921 |
| EcoRI | GAATTC | 1 cut(s) | 704 |
| EcoRII | CCWGG | 5 cut(s) | 112, 1377, 1608, 2185, 2253 |
| EcoT14I | CCWWGG | 3 cut(s) | 417, 1392, 1570 |
| EcoT22I | ATGCAT | 1 cut(s) | 512 |
| EcoT38I | GRGCYC | 2 cut(s) | 112, 432 |
| EgeI | GGCGCC | 2 cut(s) | 2191, 2210 |
| EheI | GGCGCC | 2 cut(s) | 2191, 2210 |
| ErhI | CCWWGG | 3 cut(s) | 417, 1392, 1570 |
| Esp3I | CGTCTC | 1 cut(s) | 187 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 641, 673, 2161, 2193, 2345, 2377 |
| FaqI | GGGAC | 2 cut(s) | 25, 399 |
| FauI | CCCGC | 1 cut(s) | 419 |
| FauNDI | CATATG | 1 cut(s) | 1057 |
| FokI | GGATG | 4 cut(s) | 1423, 1625, 1961, 2050 |
| FriOI | GRGCYC | 2 cut(s) | 112, 432 |
| FspBI | CTAG | 4 cut(s) | 95, 1571, 1583, 1931 |
| GlaI | GCGC | 3 cut(s) | 999, 2191, 2210 |
| GsaI | CCCAGC | 1 cut(s) | 85 |
| GsuI | CTGGAG | 4 cut(s) | 96, 492, 1274, 1861 |
| HaeII | RGCGCY | 2 cut(s) | 2193, 2212 |
| HaeIII | GGCC | 4 cut(s) | 14, 1994, 2055, 2267 |
| HapII | CCGG | 3 cut(s) | 11, 643, 2052 |
| HhaI | GCGC | 3 cut(s) | 1000, 2192, 2211 |
| Hin1I | GRCGYC | 3 cut(s) | 180, 2190, 2209 |
| Hin6I | GCGC | 3 cut(s) | 998, 2190, 2209 |
| HinP1I | GCGC | 3 cut(s) | 998, 2190, 2209 |
| HincII | GTYRAC | 1 cut(s) | 1086 |
| HindII | GTYRAC | 1 cut(s) | 1086 |
| HindIII | AAGCTT | 2 cut(s) | 482, 1073 |
| HpaII | CCGG | 3 cut(s) | 11, 643, 2052 |
| HphI | GGTGA | 5 cut(s) | 27, 489, 1430, 1598, 2136 |
| Hpy166II | GTNNAC | 3 cut(s) | 1086, 1663, 1803 |
| Hpy8I | GTNNAC | 3 cut(s) | 1086, 1663, 1803 |
| HpyAV | CCTTC | 6 cut(s) | 57, 986, 1316, 1939, 2007, 2203 |
| HpyCH4III | ACNGT | 8 cut(s) | 39, 844, 1134, 1212, 1745, 2275, 2321, 2488 |
| HpyCH4IV | ACGT | 8 cut(s) | 133, 180, 258, 533, 1152, 1665, 1675, 2468 |
| HpyF3I | CTNAG | 9 cut(s) | 567, 630, 662, 1310, 1554, 1560, 1896, 2403, 2436 |
| HpySE526I | ACGT | 8 cut(s) | 133, 180, 258, 533, 1152, 1665, 1675, 2468 |
| Hsp92I | GRCGYC | 3 cut(s) | 180, 2190, 2209 |
| HspAI | GCGC | 3 cut(s) | 998, 2190, 2209 |
| KasI | GGCGCC | 2 cut(s) | 2189, 2208 |
| Kzo9I | GATC | 6 cut(s) | 70, 286, 345, 696, 2098, 2182 |
| LguI | GCTCTTC | 1 cut(s) | 1479 |
| Lsp1109I | GCAGC | 6 cut(s) | 823, 1000, 1132, 1377, 1573, 2161 |
| LweI | GCATC | 5 cut(s) | 505, 537, 553, 1432, 2336 |
| MaeI | CTAG | 4 cut(s) | 95, 1571, 1583, 1931 |
| MaeII | ACGT | 8 cut(s) | 133, 180, 258, 533, 1152, 1665, 1675, 2468 |
| MaeIII | GTNAC | 6 cut(s) | 33, 134, 466, 1123, 1273, 1506 |
| MalI | GATC | 6 cut(s) | 72, 288, 347, 698, 2100, 2184 |
| MbiI | CCGCTC | 2 cut(s) | 426, 2126 |
| MboI | GATC | 6 cut(s) | 70, 286, 345, 696, 2098, 2182 |
| MboII | GAAGA | 6 cut(s) | 250, 253, 812, 1235, 1496, 2350 |
| MfeI | CAATTG | 3 cut(s) | 580, 1164, 2213 |
| MflI | RGATCY | 2 cut(s) | 70, 2182 |
| MhlI | GDGCHC | 5 cut(s) | 112, 215, 432, 721, 1552 |
| Mly113I | GGCGCC | 2 cut(s) | 2190, 2209 |
| MlyI | GAGTC | 4 cut(s) | 662, 1184, 1552, 2314 |
| MmeI | TCCRAC | 6 cut(s) | 241, 777, 1171, 1828, 2159, 2221 |
| Mph1103I | ATGCAT | 1 cut(s) | 512 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1855 |
| MseI | TTAA | 7 cut(s) | 306, 863, 909, 1517, 1761, 2163, 2270 |
| MslI | CAYNNNNRTG | 3 cut(s) | 819, 1611, 2236 |
| MspA1I | CMGCKG | 1 cut(s) | 1280 |
| MspI | CCGG | 3 cut(s) | 11, 643, 2052 |
| MspR9I | CCNGG | 6 cut(s) | 114, 644, 1379, 1610, 2187, 2255 |
| MunI | CAATTG | 3 cut(s) | 580, 1164, 2213 |
| Mva1269I | GAATGC | 2 cut(s) | 1489, 2477 |
| MvaI | CCWGG | 5 cut(s) | 114, 1379, 1610, 2187, 2255 |
| MvnI | CGCG | 1 cut(s) | 2264 |
| NarI | GGCGCC | 2 cut(s) | 2190, 2209 |
| NciI | CCSGG | 1 cut(s) | 644 |
| NdeI | CATATG | 1 cut(s) | 1057 |
| NdeII | GATC | 6 cut(s) | 70, 286, 345, 696, 2098, 2182 |
| NheI | GCTAGC | 1 cut(s) | 94 |
| NmeAIII | GCCGAG | 2 cut(s) | 194, 1522 |
| NmuCI | GTSAC | 4 cut(s) | 33, 134, 1123, 1273 |
| NsiI | ATGCAT | 1 cut(s) | 512 |
| NspI | RCATGY | 5 cut(s) | 510, 642, 818, 1801, 2302 |
| OliI | CACNNNNGTG | 1 cut(s) | 2236 |
| PaeI | GCATGC | 2 cut(s) | 642, 818 |
| PagI | TCATGA | 2 cut(s) | 553, 1618 |
| PasI | CCCWGGG | 1 cut(s) | 2254 |
| PciI | ACATGT | 1 cut(s) | 1797 |
| PciSI | GCTCTTC | 1 cut(s) | 1479 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1662 |
| PctI | GAATGC | 2 cut(s) | 1489, 2477 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1855 |
| PfeI | GAWTC | 8 cut(s) | 125, 557, 691, 790, 1462, 2248, 2259, 2378 |
| PflFI | GACNNNGTC | 1 cut(s) | 230 |
| PfoI | TCCNGGA | 2 cut(s) | 112, 1377 |
| PleI | GAGTC | 4 cut(s) | 661, 1183, 1552, 2313 |
| PluTI | GGCGCC | 2 cut(s) | 2193, 2212 |
| PmaCI | CACGTG | 1 cut(s) | 1666 |
| PmlI | CACGTG | 1 cut(s) | 1666 |
| PpsI | GAGTC | 4 cut(s) | 661, 1183, 1552, 2313 |
| Ppu21I | YACGTR | 2 cut(s) | 1666, 2469 |
| PpuMI | RGGWCCY | 4 cut(s) | 337, 1303, 1823, 1921 |
| PscI | ACATGT | 1 cut(s) | 1797 |
| PshBI | ATTAAT | 1 cut(s) | 306 |
| Psp124BI | GAGCTC | 1 cut(s) | 112 |
| Psp1406I | AACGTT | 2 cut(s) | 533, 1152 |
| Psp5II | RGGWCCY | 4 cut(s) | 337, 1303, 1823, 1921 |
| Psp6I | CCWGG | 5 cut(s) | 112, 1377, 1608, 2185, 2253 |
| PspCI | CACGTG | 1 cut(s) | 1666 |
| PspFI | CCCAGC | 1 cut(s) | 81 |
| PspGI | CCWGG | 5 cut(s) | 112, 1377, 1608, 2185, 2253 |
| PspPI | GGNCC | 7 cut(s) | 337, 413, 1303, 1823, 1921, 1993, 2054 |
| PspPPI | RGGWCCY | 4 cut(s) | 337, 1303, 1823, 1921 |
| PstI | CTGCAG | 3 cut(s) | 813, 1018, 1591 |
| PsuI | RGATCY | 2 cut(s) | 70, 2182 |
| PsyI | GACNNNGTC | 1 cut(s) | 230 |
| RsaI | GTAC | 5 cut(s) | 161, 477, 1043, 1662, 2467 |
| RsaNI | GTAC | 5 cut(s) | 160, 476, 1042, 1661, 2466 |
| RseI | CAYNNNNRTG | 3 cut(s) | 819, 1611, 2236 |
| SacI | GAGCTC | 1 cut(s) | 112 |
| SapI | GCTCTTC | 1 cut(s) | 1479 |
| SaqAI | TTAA | 7 cut(s) | 306, 863, 909, 1517, 1761, 2163, 2270 |
| Sau3AI | GATC | 6 cut(s) | 70, 286, 345, 696, 2098, 2182 |
| Sau96I | GGNCC | 7 cut(s) | 337, 413, 1303, 1823, 1921, 1993, 2054 |
| ScaI | AGTACT | 1 cut(s) | 477 |
| SchI | GAGTC | 4 cut(s) | 662, 1184, 1552, 2314 |
| ScrFI | CCNGG | 6 cut(s) | 114, 644, 1379, 1610, 2187, 2255 |
| SduI | GDGCHC | 5 cut(s) | 112, 215, 432, 721, 1552 |
| SfaNI | GCATC | 5 cut(s) | 505, 537, 553, 1432, 2336 |
| SfcI | CTRYAG | 3 cut(s) | 809, 1014, 1587 |
| SfoI | GGCGCC | 2 cut(s) | 2191, 2210 |
| SinI | GGWCC | 5 cut(s) | 337, 413, 1303, 1823, 1921 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 819, 1611, 2236 |
| SmlI | CTYRAG | 4 cut(s) | 431, 734, 967, 1076 |
| SmoI | CTYRAG | 4 cut(s) | 431, 734, 967, 1076 |
| SphI | GCATGC | 2 cut(s) | 642, 818 |
| SspDI | GGCGCC | 2 cut(s) | 2189, 2208 |
| SspI | AATATT | 1 cut(s) | 1855 |
| SspMI | CTAG | 4 cut(s) | 95, 1571, 1583, 1931 |
| SstI | GAGCTC | 1 cut(s) | 112 |
| StyD4I | CCNGG | 6 cut(s) | 112, 642, 1377, 1608, 2185, 2253 |
| StyI | CCWWGG | 3 cut(s) | 417, 1392, 1570 |
| TaaI | ACNGT | 8 cut(s) | 39, 844, 1134, 1212, 1745, 2275, 2321, 2488 |
| TaiI | ACGT | 8 cut(s) | 136, 183, 261, 536, 1155, 1668, 1678, 2471 |
| TaqI | TCGA | 2 cut(s) | 1183, 2390 |
| TaqII | GACCGA | 1 cut(s) | 1638 |
| TatI | WGTACW | 3 cut(s) | 475, 1041, 1660 |
| TauI | GCSGC | 4 cut(s) | 17, 1400, 1526, 2267 |
| TfiI | GAWTC | 8 cut(s) | 125, 557, 691, 790, 1462, 2248, 2259, 2378 |
| Tru1I | TTAA | 7 cut(s) | 306, 863, 909, 1517, 1761, 2163, 2270 |
| Tru9I | TTAA | 7 cut(s) | 306, 863, 909, 1517, 1761, 2163, 2270 |
| TscAI | CASTG | 3 cut(s) | 1735, 2324, 2407 |
| TseFI | GTSAC | 4 cut(s) | 33, 134, 1123, 1273 |
| TseI | GCWGC | 6 cut(s) | 811, 1013, 1145, 1365, 1586, 2174 |
| Tsp45I | GTSAC | 4 cut(s) | 33, 134, 1123, 1273 |
| TspGWI | ACGGA | 4 cut(s) | 21, 338, 1142, 1820 |
| TspRI | CASTG | 3 cut(s) | 1735, 2324, 2407 |
| Tth111I | GACNNNGTC | 1 cut(s) | 230 |
| VpaK11BI | GGWCC | 5 cut(s) | 337, 413, 1303, 1823, 1921 |
| VspI | ATTAAT | 1 cut(s) | 306 |
| XapI | RAATTY | 3 cut(s) | 603, 704, 2510 |
| XceI | RCATGY | 5 cut(s) | 510, 642, 818, 1801, 2302 |
| XmaJI | CCTAGG | 1 cut(s) | 1570 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1855 |
| XspI | CTAG | 4 cut(s) | 95, 1571, 1583, 1931 |
| ZraI | GACGTC | 1 cut(s) | 181 |
| ZrmI | AGTACT | 1 cut(s) | 477 |
| Zsp2I | ATGCAT | 1 cut(s) | 512 |