Rorug06G0343300

Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi trans-Golgi network (TGN) and or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010492
Physical Location & Seq
Forward (+)
49414517 .. 49415230
714 bp
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UTR
Exon/CDS
Intron
Rorug06G0343300.1

Sequence Viewer

Length: 321 bp
ATGGACATGGTGGCAAGGTTGGTGGACGAGAAGCCGTTGGTGATCTTCAGCAAGAGTTCGTGCTGCATGAGTCACTCGATAAAGACATTATTGTACGACTTTGGGGCAAACCCTACGGTGTACGAGCTCGATCAAATGCCGAACGGGCAGCAGATCGAAAGGGCGCTGCTGCAGCTCGGGTGCAGGCCGAGTGTACCTGCTGTATTCATAGGGCAACAGTTTATCGGTGGTACGAATACGGTGATGAGTCTCCATATGCAGAATAAGCTTGTGCCGTTGCTCATGAGGGCAAAAGCTATATGGATTTGGAACAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0019900 GO:0019901 GO:0043424
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Adaptin_N B2-adapt-app_C

Protein Analysis

106

Amino Acids

11.94

Weight (kDa)

8.93

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 75 3.9e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11490 AT5G11490 AT5G11490
fragaria_vesca FvH4_2g36170 FvH4_2g36170 FvH4_2g36170
malus_domestica MD08G1118900.v1.1 MD15G1098200.v1.1
prunus_persica Prupe.1G453100_v2.0.a1
pyrus_communis pycom08g09930 pycom15g09000
rosa_chinensis RchiOBHm_Chr6g0305701
rosa_laevigata RLG00000010867
rosa_multiflora Rmu_sc0001809.1_g000035
rosa_roxburghii Rroxscaffold_7G00162430
rosa_rugosa Rorug06G0343300
rosa_samantha Rh6AG454800 Rh6BG446700 Rh6CG468700 Rh6DG455300
rosa_wichuraiana Rw6G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 31
AfaI GTAC 4 cut(s) 95, 122, 195, 232
AluBI AGCT 4 cut(s) 127, 175, 268, 296
AluI AGCT 4 cut(s) 127, 175, 268, 296
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 5 cut(s) 63, 148, 166, 169, 172
AspLEI GCGC 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 52, 253
AvaI CYCGRG 1 cut(s) 176
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 5 cut(s) 50, 153, 156, 160, 184
BceAI ACGGC 2 cut(s) 19, 259
BcoDI GTCTC 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 170
BfoI RGCGCY 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 205
BglI GCCNNNNNGGC 1 cut(s) 145
BisI GCNGC 5 cut(s) 64, 149, 167, 170, 173
BlsI GCNGC 5 cut(s) 65, 150, 168, 171, 174
BmeT110I CYCGRG 1 cut(s) 176
BseXI GCAGC 5 cut(s) 50, 153, 156, 160, 184
BsgI GTGCAG 1 cut(s) 202
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 3 cut(s) 42, 130, 153
BspANI GGCC 1 cut(s) 187
BspHI TCATGA 1 cut(s) 282
BspMAI CTGCAG 1 cut(s) 174
BspMI ACCTGC 1 cut(s) 205
BssMI GATC 3 cut(s) 42, 130, 153
Bst4CI ACNGT 3 cut(s) 118, 219, 241
BstC8I GCNNGC 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 3 cut(s) 45, 133, 156
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 3 cut(s) 42, 130, 153
BstMWI GCNNNNNNNGC 3 cut(s) 145, 172, 265
BstSFI CTRYAG 1 cut(s) 170
BstV1I GCAGC 5 cut(s) 50, 153, 156, 160, 184
BsuRI GGCC 1 cut(s) 187
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 185
CciI TCATGA 1 cut(s) 282
CfoI GCGC 1 cut(s) 166
Csp6I GTAC 4 cut(s) 94, 121, 194, 231
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 3 cut(s) 7, 67, 283
CviJI RGCY 6 cut(s) 34, 127, 175, 187, 268, 296
CviKI_1 RGCY 6 cut(s) 34, 127, 175, 187, 268, 296
CviQI GTAC 4 cut(s) 94, 121, 194, 231
DpnI GATC 3 cut(s) 44, 132, 155
DpnII GATC 3 cut(s) 42, 130, 153
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 31
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 3 cut(s) 10, 70, 286
FaiI YATR 8 cut(s) 8, 68, 209, 255, 257, 284, 299, 301
FatI CATG 3 cut(s) 6, 66, 282
FauNDI CATATG 1 cut(s) 255
Fnu4HI GCNGC 5 cut(s) 64, 149, 167, 170, 173
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 5 cut(s) 64, 149, 167, 170, 173
GlaI GCGC 1 cut(s) 165
GluI GCNGC 5 cut(s) 64, 149, 167, 170, 173
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 1 cut(s) 187
HhaI GCGC 1 cut(s) 166
Hin1II CATG 3 cut(s) 10, 70, 286
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 2 cut(s) 70, 247
HphI GGTGA 2 cut(s) 52, 253
Hpy166II GTNNAC 3 cut(s) 25, 121, 194
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 3 cut(s) 25, 121, 194
HpyCH4III ACNGT 3 cut(s) 118, 219, 241
HpyCH4V TGCA 4 cut(s) 66, 172, 183, 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 172, 265
Hsp92II CATG 3 cut(s) 10, 70, 286
HspAI GCGC 1 cut(s) 164
Kzo9I GATC 3 cut(s) 42, 130, 153
LpnPI CCDG 2 cut(s) 169, 210
Lsp1109I GCAGC 5 cut(s) 50, 153, 156, 160, 184
MaeIII GTNAC 1 cut(s) 71
MalI GATC 3 cut(s) 44, 132, 155
MboI GATC 3 cut(s) 42, 130, 153
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 129
MlyI GAGTC 2 cut(s) 79, 256
MnlI CCTC 1 cut(s) 279
MwoI GCNNNNNNNGC 3 cut(s) 145, 172, 265
NdeI CATATG 1 cut(s) 255
NdeII GATC 3 cut(s) 42, 130, 153
NlaIII CATG 3 cut(s) 10, 70, 286
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 71
PagI TCATGA 1 cut(s) 282
PkrI GCNGC 5 cut(s) 65, 150, 168, 171, 174
PleI GAGTC 2 cut(s) 78, 255
PpsI GAGTC 2 cut(s) 78, 255
Psp124BI GAGCTC 1 cut(s) 129
PstI CTGCAG 1 cut(s) 174
RsaI GTAC 4 cut(s) 95, 122, 195, 232
RsaNI GTAC 4 cut(s) 94, 121, 194, 231
SacI GAGCTC 1 cut(s) 129
SatI GCNGC 5 cut(s) 64, 149, 167, 170, 173
Sau3AI GATC 3 cut(s) 42, 130, 153
SchI GAGTC 2 cut(s) 79, 256
SduI GDGCHC 1 cut(s) 129
SetI ASST 6 cut(s) 20, 129, 177, 199, 270, 298
SfcI CTRYAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 129
TaaI ACNGT 3 cut(s) 118, 219, 241
TaqI TCGA 3 cut(s) 77, 129, 156
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 5 cut(s) 63, 148, 166, 169, 172
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.