FvH4_2g36170

Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi trans-Golgi network (TGN) and or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010492
Physical Location & Seq
Reverse (-)
26519173 .. 26525807
6635 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36170.t1

Sequence Viewer

Length: 2541 bp
ATGGCTCCTCCGGCCATATCTGCCCGATCTTCGTCGCCGTCGCAGCCATCCGGAAAAGGCGAAGTTGCGGATGTGAAATCGCAGCTCCGGCTTCTGGCCGGCAGCCGAGCACCGGGAGCAGATGATTCCAAGCGTGATCTTTTTAAGAAGGTTATCTCTTACATGACGATCGGCATTGACGTGTCATCGGTTTTCGGAGAGATGGTGATGTGCTCAGCAACATCGGATATTGTTTTGAAGAAAATGTGTTATCTCTATGTTGGAAACTATGCAAAGGTTAATCCGGACCTCGCACTTTTGACGATCAATTTTCTTCAAAGAGATTGCAAGGATGCGGATCCAATGATCCGGGGTCTTGCTTTGAGGAGCTTGTGTTCATTACGAGTGACGAACCTGGTGGAGTATTTGGTGGGGCCCTTGGGTGCAGGGTTGAAGGATAATAGTAGTTATGTGAGGATGGTAGCAGCTATGGGGGTTCTGAAGTTGTATCACATATCAGCTTCAACTTGTGTTGACGCAGAGTTTCCCGCAATGCTTAAGCATTTGTTGCTTAATGATCCAGATACACAGGTGGTTGCAAATTGTTTATCTGCCCTGCAAGAGATTTGGAGTTTAGAAGGAAGTGGCTCCGAGGAAGTATCCAGGGAGAGAGAAATTTTGCTCAGCAAATCAGTTATATACTATCTTTTGAATCGGATCAGGGAATTCAGTGAATGGGCGCAATGCCTTGTGCTTGAGTTGGTAGCTAAGTATGTACCATCAGATAGCAATGAGATATTTGATGTCATGAATCTGCTCGAGGATAGACTTCAGCATGCAAATGGTGCGGTTGTCTTGGCCACCATTAAAGTATTTCTTCATTTGACTTTATCGATGACTGACGTTCATCAGCAGGTATATGAACGTATTAAAGCTCCTCTTCTGACCTTAGTGAGCTCAGGAAGTCCAGAGCAATCTTATGCCGTTTTAAGTCACCTGCATATTTTGGTGATGCGTGCGCCTTTCATATTTGCTTCAGACTATAAACACTTCTATTGCCAGTATAATGAGCCATCTTATGTCAAAAAATTGAAGCTTGAGATGTTGACTGCAGTGGCAAATGAAAGTAACACCTATGAAATCGTGACGGAATTATGTGAATATGCTGCAAATGTTGATATTCCCATTGCAAGAGAGTCGATCCGTGCAGTCGGGAAAATAGCTCTTCAGCAGTATGATGTGAACGCGATTGTTGATCGGCTTCTTCAGTTTCTGGAGATGGAGAAGGACTATGTAACTGCTGAAGCTCTGGTTCTTGTAAAAGATCTGCTGAGAAAATATCCCCAATGGAGTCAAGATTGCATTGCGGTTGTTGGGAACATAAGCAGCAATAATGTCCAAGAACCCAAGGCCAAAGCAGCTCTTATATGGATGCTGGGTGAGTACTCTCAGGATATGCAAGATGCACCTTATATATTAGAGGGTTTGGTTGAAAATTGGGAGGATGAGCACTCCGCTGAGGTTCGGTTACATCTTCTCACAGCAGTAATGAAGTGTTTTTTTAAGAGGCCACCTGAGACTCAGGGGTCCTTGGGAGCTGCACTGGCTGCAGGTCTTGCTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTCTACTACAGGCTTTTGCAATATGACATAAGTGTAGCAGAACAAGTGGTAAACCCTCCAAAGCAAGCTGTTTCTGTCTTTGCTGATACCCAAAGCAGTGAAGTCAAAGATCGAATATTTGATGAATTCAACAGTTTGTCTGTTGTATATCAAAAGCCATCATACATGTTTACTCACAAGGAACACAGAGGTCCTTTTGAATTTTCAGACGAAATTGGACATGTATCAATTGGCACCGAATCTGCAGATACTGCTGTTCCAGCTAACAGGGTCGAGGCAAATGATAAGGATCTTCTTTTAAGTACATCAGAGAAGGAGGAGACAAAAGTTCCCAATAACAGTTCCTCTGCATATAGTGCTCCCTCATATGATCTTACCTCTGTATCTGTTCCCACTTCTCAACTATCGGATTTGGTGATATCAAATTCCACTGTGCCAGGACATGCTCCACAGTCTTCTAGCTTTGCAATTGATGACCTACTTGGTCTGGGTTTTCCTGCTGCCCCTGCTCCTGCTCCTGCATCTTCGCCTCCTCCTTTGAAGCTTAACCCAAAAGCTGTTTTGGATCCAACTACTTTTCAGCAGAAATGGCGCCAACTGCCCATATCATTATCACAGGATTATTCTATTAACGCTCAAGGAGTTGCAGCACTGACTACACCCCAATCACTCCTGAAACATATGCAAGGCCATTCCATCCACTGCATCGCTTCTGGTGGAAAATCTCCCACCTTCAAGTTCTTCTTCTTTGCCCAACAAGCAGAAGGATCTTCAACATTTTTGGTCGAGTGTATAGTCAACACATCCTCTGCGAAAGCTCAAATAAAGATCAAAGCCGATGATCAGAGTGCAACAGAGCCCTTTTCATCTGTATTTCAATCAGCTTTGTCCAAATTCGGCATGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019899 GO:0019900 GO:0019901 GO:0043424
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Adaptin_N B2-adapt-app_C

Protein Analysis

847

Amino Acids

93.12

Weight (kDa)

5.35

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adaptin_N PF01602 39 - 551 3.3e-94 Adaptin N terminal region
Cnd1 PF12717 115 - 287 1.4e-45 non-SMC mitotic condensation complex subunit 1
B2-adapt-app_C PF09066 728 - 840 1.3e-24 Beta2-adaptin appendage, C-terminal sub-domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11490 AT5G11490 AT5G11490
fragaria_vesca FvH4_2g36170 FvH4_2g36170 FvH4_2g36170
malus_domestica MD08G1118900.v1.1 MD15G1098200.v1.1
prunus_persica Prupe.1G453100_v2.0.a1
pyrus_communis pycom08g09930 pycom15g09000
rosa_chinensis RchiOBHm_Chr6g0305701
rosa_laevigata RLG00000010867
rosa_multiflora Rmu_sc0001809.1_g000035
rosa_roxburghii Rroxscaffold_7G00162430
rosa_rugosa Rorug06G0343300
rosa_samantha Rh6AG454800 Rh6BG446700 Rh6CG468700 Rh6DG455300
rosa_wichuraiana Rw6G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 984
AasI GACNNNNNNGTC 1 cut(s) 1564
Acc36I ACCTGC 3 cut(s) 883, 984, 1580
AccB1I GGYRCC 2 cut(s) 1865, 2223
AccII CGCG 1 cut(s) 1226
AccIII TCCGGA 2 cut(s) 50, 283
AciI CCGC 6 cut(s) 68, 335, 528, 827, 1346, 1494
AcoI YGGCCR 3 cut(s) 12, 96, 837
AcsI RAATTY 6 cut(s) 654, 704, 1757, 1832, 2056, 2525
AcuI CTGAAG 6 cut(s) 500, 794, 999, 1190, 1229, 1302
AcyI GRCGYC 1 cut(s) 2224
AfaI GTAC 3 cut(s) 756, 1424, 1936
AfiI CCNNNNNNNGG 2 cut(s) 94, 112
AflII CTTAAG 1 cut(s) 536
AflIII ACRYGT 3 cut(s) 180, 1797, 1852
AjiI CACGTC 1 cut(s) 181
AjnI CCWGG 4 cut(s) 393, 641, 1608, 2068
AloI GAACNNNNNNTCC 2 cut(s) 358, 390
Alw21I GWGCWC 5 cut(s) 112, 215, 938, 1491, 1993
Alw26I GTCTC 2 cut(s) 1550, 1946
AlwNI CAGNNNCTG 2 cut(s) 1252, 1883
Ama87I CYCGRG 1 cut(s) 797
Aor13HI TCCGGA 2 cut(s) 50, 283
AoxI GGCC 8 cut(s) 12, 96, 413, 837, 1389, 1547, 1626, 2320
ApaI GGGCCC 1 cut(s) 417
ApoI RAATTY 6 cut(s) 654, 704, 1757, 1832, 2056, 2525
AspLEI GCGC 3 cut(s) 721, 1000, 2226
AspS9I GGNCC 6 cut(s) 286, 413, 414, 1566, 1626, 1823
AsuC2I CCSGG 2 cut(s) 114, 350
AsuHPI GGTGA 6 cut(s) 217, 965, 1000, 1430, 1598, 2059
AvaI CYCGRG 1 cut(s) 797
AvaII GGWCC 3 cut(s) 286, 1566, 1823
BaeGI GKGCMC 1 cut(s) 417
BaeI ACNNNNGTAYC 6 cut(s) 555, 588, 1872, 1905, 1998, 2031
BalI TGGCCA 1 cut(s) 839
BamHI GGATCC 2 cut(s) 337, 2197
BanI GGYRCC 2 cut(s) 1865, 2223
BanII GRGCYC 3 cut(s) 417, 938, 2493
BbsI GAAGAC 1 cut(s) 2079
Bbv12I GWGCWC 5 cut(s) 112, 215, 938, 1491, 1993
BbvCI CCTCAGC 1 cut(s) 1497
BccI CCATC 8 cut(s) 55, 196, 451, 766, 1060, 1252, 1798, 2336
BceAI ACGGC 2 cut(s) 22, 947
BcgI CGANNNNNNTGC 2 cut(s) 1158, 1192
BciT130I CCWGG 4 cut(s) 395, 643, 1610, 2070
BciVI GTATCC 1 cut(s) 649
BclI TGATCA 1 cut(s) 2473
BcnI CCSGG 2 cut(s) 114, 350
BcoDI GTCTC 2 cut(s) 1550, 1946
BfaI CTAG 1 cut(s) 2091
BfmI CTRYAG 4 cut(s) 1089, 1587, 1639, 1875
BfoI RGCGCY 1 cut(s) 2227
BfrI CTTAAG 1 cut(s) 536
BfuAI ACCTGC 3 cut(s) 883, 984, 1580
BfuI GTATCC 1 cut(s) 649
BglII AGATCT 1 cut(s) 1303
BlpI GCTNAGC 2 cut(s) 214, 662
BmcAI AGTACT 1 cut(s) 1424
Bme1390I CCNGG 6 cut(s) 114, 350, 395, 643, 1610, 2070
Bme18I GGWCC 3 cut(s) 286, 1566, 1823
BmeT110I CYCGRG 1 cut(s) 797
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 6 cut(s) 286, 413, 414, 1566, 1626, 1823
BmiI GGNNCC 9 cut(s) 6, 339, 414, 415, 628, 1567, 1867, 2199, 2225
BmrFI CCNGG 6 cut(s) 114, 350, 395, 643, 1610, 2070
BmsI GCATC 6 cut(s) 322, 981, 1401, 1432, 2162, 2346
BpiI GAAGAC 1 cut(s) 2079
BpmI CTGGAG 1 cut(s) 1274
Bpu10I CCTNAGC 2 cut(s) 937, 1497
Bpu1102I GCTNAGC 2 cut(s) 214, 662
BpuEI CTTGAG 3 cut(s) 755, 1097, 2253
BpuMI CCSGG 2 cut(s) 114, 350
Bsa29I ATCGAT 1 cut(s) 872
BsaBI GATNNNNATC 2 cut(s) 336, 1920
BsaHI GRCGYC 1 cut(s) 2224
BsaJI CCNNGG 6 cut(s) 349, 417, 630, 642, 1386, 1569
BsaWI WCCGGW 2 cut(s) 50, 283
BsaXI ACNNNNNCTCC 4 cut(s) 189, 219, 358, 388
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 112
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 1039, 1587
Bse3DI GCAATG 5 cut(s) 537, 728, 775, 1164, 1341
Bse8I GATNNNNATC 2 cut(s) 336, 1920
BseAI TCCGGA 2 cut(s) 50, 283
BseBI CCWGG 4 cut(s) 395, 643, 1610, 2070
BseCI ATCGAT 1 cut(s) 872
BseDI CCNNGG 6 cut(s) 349, 417, 630, 642, 1386, 1569
BseGI GGATG 9 cut(s) 47, 76, 337, 462, 1416, 1489, 1618, 2328, 2435
BseJI GATNNNNATC 2 cut(s) 336, 1920
BseLI CCNNNNNNNGG 2 cut(s) 94, 112
BseMI GCAATG 5 cut(s) 537, 728, 775, 1164, 1341
BseMII CTCAG 8 cut(s) 228, 676, 951, 1301, 1442, 1488, 1545, 1574
BseNI ACTGG 2 cut(s) 1039, 1587
BseRI GAGGAG 4 cut(s) 379, 906, 1964, 2154
BseSI GKGCMC 1 cut(s) 417
BseYI CCCAGC 1 cut(s) 1414
BsgI GTGCAG 3 cut(s) 444, 1206, 1563
Bsh1236I CGCG 1 cut(s) 1226
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 8 cut(s) 14, 98, 415, 839, 1391, 1549, 1628, 2322
BshNI GGYRCC 2 cut(s) 1865, 2223
BshVI ATCGAT 1 cut(s) 872
BsiEI CGRYCG 1 cut(s) 171
BsiHKAI GWGCWC 5 cut(s) 112, 215, 938, 1491, 1993
BsiHKCI CYCGRG 1 cut(s) 797
BsiSI CCGG 7 cut(s) 11, 51, 88, 99, 113, 284, 349
BslI CCNNNNNNNGG 2 cut(s) 94, 112
BsmAI GTCTC 2 cut(s) 1550, 1946
BsnI GGCC 8 cut(s) 14, 98, 415, 839, 1391, 1549, 1628, 2322
BsoBI CYCGRG 1 cut(s) 797
Bsp120I GGGCCC 1 cut(s) 413
Bsp1286I GDGCHC 7 cut(s) 112, 215, 417, 938, 1491, 1993, 2493
Bsp13I TCCGGA 2 cut(s) 50, 283
Bsp1720I GCTNAGC 2 cut(s) 214, 662
BspACI CCGC 6 cut(s) 68, 335, 528, 827, 1346, 1494
BspANI GGCC 8 cut(s) 14, 98, 415, 839, 1391, 1549, 1628, 2322
BspCNI CTCAG 8 cut(s) 227, 675, 950, 1302, 1441, 1489, 1546, 1573
BspDI ATCGAT 1 cut(s) 872
BspEI TCCGGA 2 cut(s) 50, 283
BspFNI CGCG 1 cut(s) 1226
BspHI TCATGA 2 cut(s) 786, 1618
BspLI GGNNCC 9 cut(s) 6, 339, 414, 415, 628, 1567, 1867, 2199, 2225
BspMAI CTGCAG 3 cut(s) 1093, 1591, 1879
BspMI ACCTGC 3 cut(s) 883, 984, 1580
BspQI GCTCTTC 1 cut(s) 1209
BspT107I GGYRCC 2 cut(s) 1865, 2223
BspTI CTTAAG 1 cut(s) 536
BsrDI GCAATG 5 cut(s) 537, 728, 775, 1164, 1341
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 2 cut(s) 1039, 1587
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 6 cut(s) 349, 417, 630, 642, 1386, 1569
BssNI GRCGYC 1 cut(s) 2224
BssT1I CCWWGG 3 cut(s) 417, 1386, 1569
Bst2UI CCWGG 4 cut(s) 395, 643, 1610, 2070
Bst4CI ACNGT 4 cut(s) 1766, 1973, 2065, 2085
Bst6I CTCTTC 2 cut(s) 924, 1209
BstACI GRCGYC 1 cut(s) 2224
BstAFI CTTAAG 1 cut(s) 536
BstAPI GCANNNNNTGC 6 cut(s) 547, 824, 1586, 1595, 1883, 1988
BstC8I GCNNGC 4 cut(s) 100, 816, 996, 1698
BstF5I GGATG 9 cut(s) 47, 76, 337, 462, 1416, 1489, 1618, 2328, 2435
BstFNI CGCG 1 cut(s) 1226
BstH2I RGCGCY 1 cut(s) 2227
BstHHI GCGC 3 cut(s) 721, 1000, 2226
BstMAI GTCTC 2 cut(s) 1550, 1946
BstMCI CGRYCG 1 cut(s) 171
BstNI CCWGG 4 cut(s) 395, 643, 1610, 2070
BstNSI RCATGY 4 cut(s) 818, 1801, 1856, 2078
BstSCI CCNGG 6 cut(s) 112, 348, 393, 641, 1608, 2068
BstSFI CTRYAG 4 cut(s) 1089, 1587, 1639, 1875
BstSLI GKGCMC 1 cut(s) 417
BstUI CGCG 1 cut(s) 1226
BstV2I GAAGAC 1 cut(s) 2079
BstX2I RGATCY 5 cut(s) 337, 1303, 1921, 2197, 2399
BstYI RGATCY 5 cut(s) 337, 1303, 1921, 2197, 2399
Bsu15I ATCGAT 1 cut(s) 872
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 8 cut(s) 14, 98, 415, 839, 1391, 1549, 1628, 2322
BsuTUI ATCGAT 1 cut(s) 872
BtgZI GCGATG 1 cut(s) 2323
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 9 cut(s) 47, 76, 337, 462, 1416, 1489, 1618, 2328, 2435
BtsI GCAGTG 3 cut(s) 1098, 1735, 2332
BtsIMutI CAGTG 7 cut(s) 715, 1098, 1580, 1735, 2061, 2282, 2332
BveI ACCTGC 3 cut(s) 883, 984, 1580
Cac8I GCNNGC 4 cut(s) 100, 816, 996, 1698
CaiI CAGNNNCTG 2 cut(s) 1252, 1883
CciI TCATGA 2 cut(s) 786, 1618
CfoI GCGC 3 cut(s) 721, 1000, 2226
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 6 cut(s) 286, 413, 414, 1566, 1626, 1823
ClaI ATCGAT 1 cut(s) 872
CseI GACGC 1 cut(s) 524
CsiI ACCWGGT 1 cut(s) 393
Csp6I GTAC 3 cut(s) 755, 1423, 1935
CviAII CATG 9 cut(s) 163, 787, 815, 1619, 1798, 1853, 2075, 2533, 2538
CviQI GTAC 3 cut(s) 755, 1423, 1935
DinI GGCGCC 1 cut(s) 2225
DrdI GACNNNNNNGTC 1 cut(s) 1564
DseDI GACNNNNNNGTC 1 cut(s) 1564
EaeI YGGCCR 3 cut(s) 12, 96, 837
Eam1104I CTCTTC 2 cut(s) 924, 1209
EarI CTCTTC 2 cut(s) 924, 1209
Ecl136II GAGCTC 1 cut(s) 936
Eco130I CCWWGG 3 cut(s) 417, 1386, 1569
Eco24I GRGCYC 3 cut(s) 417, 938, 2493
Eco32I GATATC 1 cut(s) 2052
Eco47I GGWCC 3 cut(s) 286, 1566, 1823
Eco53kI GAGCTC 1 cut(s) 936
Eco57I CTGAAG 6 cut(s) 500, 794, 999, 1190, 1229, 1302
Eco88I CYCGRG 1 cut(s) 797
EcoICRI GAGCTC 1 cut(s) 936
EcoO109I RGGNCCY 5 cut(s) 413, 414, 1566, 1626, 1823
EcoRI GAATTC 2 cut(s) 704, 1757
EcoRII CCWGG 4 cut(s) 393, 641, 1608, 2068
EcoRV GATATC 1 cut(s) 2052
EcoT14I CCWWGG 3 cut(s) 417, 1386, 1569
EcoT38I GRGCYC 3 cut(s) 417, 938, 2493
EgeI GGCGCC 1 cut(s) 2225
EheI GGCGCC 1 cut(s) 2225
ErhI CCWWGG 3 cut(s) 417, 1386, 1569
FaeI CATG 9 cut(s) 166, 790, 818, 1622, 1801, 1856, 2078, 2536, 2541
FalI AAGNNNNNCTT 8 cut(s) 840, 872, 903, 935, 1386, 1418, 2360, 2392
FatI CATG 9 cut(s) 162, 786, 814, 1618, 1797, 1852, 2074, 2532, 2537
FauI CCCGC 1 cut(s) 535
FauNDI CATATG 2 cut(s) 1999, 2313
FbaI TGATCA 1 cut(s) 2473
FokI GGATG 9 cut(s) 34, 83, 344, 469, 1423, 1496, 1625, 2315, 2422
FriOI GRGCYC 3 cut(s) 417, 938, 2493
FspBI CTAG 1 cut(s) 2091
GlaI GCGC 3 cut(s) 720, 999, 2225
GsaI CCCAGC 1 cut(s) 1418
GsuI CTGGAG 1 cut(s) 1274
HaeII RGCGCY 1 cut(s) 2227
HaeIII GGCC 8 cut(s) 14, 98, 415, 839, 1391, 1549, 1628, 2322
HapII CCGG 7 cut(s) 11, 51, 88, 99, 113, 284, 349
HgaI GACGC 1 cut(s) 524
HhaI GCGC 3 cut(s) 721, 1000, 2226
Hin1I GRCGYC 1 cut(s) 2224
Hin1II CATG 9 cut(s) 166, 790, 818, 1622, 1801, 1856, 2078, 2536, 2541
Hin6I GCGC 3 cut(s) 719, 998, 2224
HinP1I GCGC 3 cut(s) 719, 998, 2224
HincII GTYRAC 3 cut(s) 514, 1086, 2431
HindII GTYRAC 3 cut(s) 514, 1086, 2431
HindIII AAGCTT 2 cut(s) 1073, 2174
HinfI GANTC 7 cut(s) 125, 691, 790, 1175, 1330, 1558, 1871
HpaII CCGG 7 cut(s) 11, 51, 88, 99, 113, 284, 349
HphI GGTGA 6 cut(s) 217, 965, 1000, 1430, 1598, 2059
Hpy166II GTNNAC 6 cut(s) 514, 1086, 1222, 1684, 1803, 2431
Hpy8I GTNNAC 6 cut(s) 514, 1086, 1222, 1684, 1803, 2431
Hpy99I CGWCG 2 cut(s) 37, 43
HpyAV CCTTC 7 cut(s) 142, 427, 611, 1258, 1939, 2374, 2390
HpyCH4III ACNGT 4 cut(s) 1766, 1973, 2065, 2085
HpyCH4IV ACGT 3 cut(s) 180, 882, 904
HpySE526I ACGT 3 cut(s) 180, 882, 904
Hsp92I GRCGYC 1 cut(s) 2224
Hsp92II CATG 9 cut(s) 166, 790, 818, 1622, 1801, 1856, 2078, 2536, 2541
HspAI GCGC 3 cut(s) 719, 998, 2224
KasI GGCGCC 1 cut(s) 2223
Kpn2I TCCGGA 2 cut(s) 50, 283
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 2473
LguI GCTCTTC 1 cut(s) 1209
LweI GCATC 6 cut(s) 322, 981, 1401, 1432, 2162, 2346
MabI ACCWGGT 1 cut(s) 393
MaeI CTAG 1 cut(s) 2091
MaeII ACGT 3 cut(s) 180, 882, 904
MaeIII GTNAC 6 cut(s) 385, 971, 1106, 1123, 1273, 1506
MfeI CAATTG 2 cut(s) 1860, 2100
MflI RGATCY 5 cut(s) 337, 1303, 1921, 2197, 2399
MhlI GDGCHC 7 cut(s) 112, 215, 417, 938, 1491, 1993, 2493
MlsI TGGCCA 1 cut(s) 839
MluNI TGGCCA 1 cut(s) 839
Mly113I GGCGCC 1 cut(s) 2224
MlyI GAGTC 3 cut(s) 1184, 1339, 1552
MmeI TCCRAC 2 cut(s) 241, 2225
Mox20I TGGCCA 1 cut(s) 839
MroI TCCGGA 2 cut(s) 50, 283
MroNI GCCGGC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 839
MslI CAYNNNNRTG 3 cut(s) 179, 819, 1611
Msp20I TGGCCA 1 cut(s) 839
MspA1I CMGCKG 1 cut(s) 1496
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 7 cut(s) 11, 51, 88, 99, 113, 284, 349
MspR9I CCNGG 6 cut(s) 114, 350, 395, 643, 1610, 2070
MunI CAATTG 2 cut(s) 1860, 2100
MvaI CCWGG 4 cut(s) 395, 643, 1610, 2070
MvnI CGCG 1 cut(s) 1226
NaeI GCCGGC 1 cut(s) 100
NarI GGCGCC 1 cut(s) 2224
NciI CCSGG 2 cut(s) 114, 350
NdeI CATATG 2 cut(s) 1999, 2313
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 9 cut(s) 166, 790, 818, 1622, 1801, 1856, 2078, 2536, 2541
NlaIV GGNNCC 9 cut(s) 6, 339, 414, 415, 628, 1567, 1867, 2199, 2225
NmeAIII GCCGAG 1 cut(s) 131
NmuCI GTSAC 3 cut(s) 385, 971, 1123
NspI RCATGY 4 cut(s) 818, 1801, 1856, 2078
PaeI GCATGC 1 cut(s) 818
PaeR7I CTCGAG 1 cut(s) 797
PagI TCATGA 2 cut(s) 786, 1618
PaqCI CACCTGC 1 cut(s) 984
PciI ACATGT 2 cut(s) 1797, 1852
PciSI GCTCTTC 1 cut(s) 1209
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 100
PfeI GAWTC 4 cut(s) 125, 691, 790, 1871
Ple19I CGATCG 1 cut(s) 171
PleI GAGTC 3 cut(s) 1183, 1338, 1552
PluTI GGCGCC 1 cut(s) 2227
PpsI GAGTC 3 cut(s) 1183, 1338, 1552
PpuMI RGGWCCY 2 cut(s) 1566, 1823
PscI ACATGT 2 cut(s) 1797, 1852
Psp124BI GAGCTC 1 cut(s) 938
Psp5II RGGWCCY 2 cut(s) 1566, 1823
Psp6I CCWGG 4 cut(s) 393, 641, 1608, 2068
PspFI CCCAGC 1 cut(s) 1414
PspGI CCWGG 4 cut(s) 393, 641, 1608, 2068
PspN4I GGNNCC 9 cut(s) 6, 339, 414, 415, 628, 1567, 1867, 2199, 2225
PspOMI GGGCCC 1 cut(s) 413
PspPI GGNCC 6 cut(s) 286, 413, 414, 1566, 1626, 1823
PspPPI RGGWCCY 2 cut(s) 1566, 1823
PspXI VCTCGAGB 1 cut(s) 797
PstI CTGCAG 3 cut(s) 1093, 1591, 1879
PstNI CAGNNNCTG 2 cut(s) 1252, 1883
PsuI RGATCY 5 cut(s) 337, 1303, 1921, 2197, 2399
PvuI CGATCG 1 cut(s) 171
RsaI GTAC 3 cut(s) 756, 1424, 1936
RsaNI GTAC 3 cut(s) 755, 1423, 1935
RseI CAYNNNNRTG 3 cut(s) 179, 819, 1611
SacI GAGCTC 1 cut(s) 938
SapI GCTCTTC 1 cut(s) 1209
Sau96I GGNCC 6 cut(s) 286, 413, 414, 1566, 1626, 1823
ScaI AGTACT 1 cut(s) 1424
SchI GAGTC 3 cut(s) 1184, 1339, 1552
ScrFI CCNGG 6 cut(s) 114, 350, 395, 643, 1610, 2070
SduI GDGCHC 7 cut(s) 112, 215, 417, 938, 1491, 1993, 2493
SexAI ACCWGGT 1 cut(s) 393
SfaNI GCATC 6 cut(s) 322, 981, 1401, 1432, 2162, 2346
SfcI CTRYAG 4 cut(s) 1089, 1587, 1639, 1875
SfoI GGCGCC 1 cut(s) 2225
Sfr274I CTCGAG 1 cut(s) 797
SinI GGWCC 3 cut(s) 286, 1566, 1823
SlaI CTCGAG 1 cut(s) 797
SmiMI CAYNNNNRTG 3 cut(s) 179, 819, 1611
SmlI CTYRAG 5 cut(s) 536, 734, 797, 1076, 2268
SmoI CTYRAG 5 cut(s) 536, 734, 797, 1076, 2268
SphI GCATGC 1 cut(s) 818
SsiI CCGC 6 cut(s) 68, 335, 528, 827, 1346, 1494
SspDI GGCGCC 1 cut(s) 2223
SspI AATATT 1 cut(s) 1749
SspMI CTAG 1 cut(s) 2091
SstI GAGCTC 1 cut(s) 938
StyD4I CCNGG 6 cut(s) 112, 348, 393, 641, 1608, 2068
StyI CCWWGG 3 cut(s) 417, 1386, 1569
TaaI ACNGT 4 cut(s) 1766, 1973, 2065, 2085
TaiI ACGT 3 cut(s) 183, 885, 907
TaqI TCGA 6 cut(s) 798, 872, 1178, 1744, 1905, 2418
TatI WGTACW 2 cut(s) 1422, 1934
TfiI GAWTC 4 cut(s) 125, 691, 790, 1871
TscAI CASTG 7 cut(s) 715, 1098, 1587, 1735, 2068, 2289, 2339
TseFI GTSAC 3 cut(s) 385, 971, 1123
Tsp45I GTSAC 3 cut(s) 385, 971, 1123
TspGWI ACGGA 2 cut(s) 1142, 1172
TspRI CASTG 7 cut(s) 715, 1098, 1587, 1735, 2068, 2289, 2339
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 3 cut(s) 286, 1566, 1823
XapI RAATTY 6 cut(s) 654, 704, 1757, 1832, 2056, 2525
XceI RCATGY 4 cut(s) 818, 1801, 1856, 2078
XcmI CCANNNNNNNNNTGG 1 cut(s) 2530
XhoI CTCGAG 1 cut(s) 797
XspI CTAG 1 cut(s) 2091
ZrmI AGTACT 1 cut(s) 1424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.