Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi trans-Golgi network (TGN) and or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G11490 AT5G11490 AT5G11490 |
| fragaria_vesca | FvH4_2g36170 FvH4_2g36170 FvH4_2g36170 |
| malus_domestica | MD08G1118900.v1.1 MD15G1098200.v1.1 |
| prunus_persica | Prupe.1G453100_v2.0.a1 |
| pyrus_communis | pycom08g09930 pycom15g09000 |
| rosa_chinensis | RchiOBHm_Chr6g0305701 |
| rosa_laevigata | RLG00000010867 |
| rosa_multiflora | Rmu_sc0001809.1_g000035 |
| rosa_roxburghii | Rroxscaffold_7G00162430 |
| rosa_rugosa | Rorug06G0343300 |
| rosa_samantha | Rh6AG454800 Rh6BG446700 Rh6CG468700 Rh6DG455300 |
| rosa_wichuraiana | Rw6G039660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 639 |
| Acc36I | ACCTGC | 4 cut(s) | 538, 639, 1235, 1789 |
| AccB1I | GGYRCC | 2 cut(s) | 479, 1869 |
| AciI | CCGC | 2 cut(s) | 1052, 1925 |
| AclWI | GGATC | 5 cut(s) | 1409, 1584, 1838, 1851, 2053 |
| AcsI | RAATTY | 8 cut(s) | 145, 198, 309, 359, 1219, 1412, 1711, 2171 |
| AcuI | CTGAAG | 5 cut(s) | 52, 654, 845, 884, 957 |
| AcyI | GRCGYC | 1 cut(s) | 1870 |
| AfaI | GTAC | 3 cut(s) | 411, 698, 1591 |
| AflIII | ACRYGT | 2 cut(s) | 1452, 1507 |
| AgsI | TTSAA | 8 cut(s) | 346, 515, 727, 1127, 1710, 1819, 2014, 2052 |
| AjnI | CCWGG | 2 cut(s) | 296, 1263 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2000, 2032 |
| AleI | CACNNNNGTG | 1 cut(s) | 1178 |
| Alw21I | GWGCWC | 4 cut(s) | 593, 655, 1146, 1648 |
| Alw26I | GTCTC | 2 cut(s) | 1205, 1601 |
| AlwI | GGATC | 5 cut(s) | 1409, 1584, 1838, 1851, 2053 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 907, 1538 |
| Ama87I | CYCGRG | 1 cut(s) | 452 |
| AoxI | GGCC | 3 cut(s) | 1044, 1202, 1966 |
| ApeKI | GCWGC | 7 cut(s) | 182, 279, 800, 1020, 1232, 1241, 1784 |
| ApoI | RAATTY | 8 cut(s) | 145, 198, 309, 359, 1219, 1412, 1711, 2171 |
| AspLEI | GCGC | 1 cut(s) | 1872 |
| AspS9I | GGNCC | 1 cut(s) | 1478 |
| AsuHPI | GGTGA | 3 cut(s) | 655, 1253, 1714 |
| AvaI | CYCGRG | 1 cut(s) | 452 |
| AvaII | GGWCC | 1 cut(s) | 1478 |
| BaeGI | GKGCMC | 1 cut(s) | 376 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1527, 1560 |
| BamHI | GGATCC | 1 cut(s) | 1843 |
| BanI | GGYRCC | 2 cut(s) | 479, 1869 |
| BanII | GRGCYC | 2 cut(s) | 593, 2139 |
| BbsI | GAAGAC | 2 cut(s) | 53, 1731 |
| Bbv12I | GWGCWC | 4 cut(s) | 593, 655, 1146, 1648 |
| BbvI | GCAGC | 7 cut(s) | 169, 291, 787, 1032, 1219, 1228, 1771 |
| BccI | CCATC | 5 cut(s) | 112, 715, 907, 1453, 1982 |
| BceAI | ACGGC | 1 cut(s) | 467 |
| BciT130I | CCWGG | 2 cut(s) | 298, 1265 |
| BciVI | GTATCC | 1 cut(s) | 304 |
| BclI | TGATCA | 1 cut(s) | 2119 |
| BcoDI | GTCTC | 2 cut(s) | 1205, 1601 |
| BfaI | CTAG | 2 cut(s) | 33, 1743 |
| BfmI | CTRYAG | 7 cut(s) | 135, 183, 464, 744, 1242, 1294, 1530 |
| BfoI | RGCGCY | 1 cut(s) | 1873 |
| BfuAI | ACCTGC | 4 cut(s) | 538, 639, 1235, 1789 |
| BfuI | GTATCC | 1 cut(s) | 304 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1052 |
| BglII | AGATCT | 1 cut(s) | 958 |
| BisI | GCNGC | 9 cut(s) | 183, 280, 801, 1021, 1053, 1233, 1242, 1785, 1926 |
| BlpI | GCTNAGC | 1 cut(s) | 317 |
| BlsI | GCNGC | 9 cut(s) | 184, 281, 802, 1022, 1054, 1234, 1243, 1786, 1927 |
| Bme1390I | CCNGG | 2 cut(s) | 298, 1265 |
| Bme18I | GGWCC | 1 cut(s) | 1478 |
| BmeT110I | CYCGRG | 1 cut(s) | 452 |
| BmgT120I | GGNCC | 1 cut(s) | 1478 |
| BmiI | GGNNCC | 3 cut(s) | 481, 1845, 1871 |
| BmrFI | CCNGG | 2 cut(s) | 298, 1265 |
| BmsI | GCATC | 6 cut(s) | 636, 643, 1056, 1087, 1717, 1992 |
| BpiI | GAAGAC | 2 cut(s) | 53, 1731 |
| BpmI | CTGGAG | 1 cut(s) | 929 |
| Bpu10I | CCTNAGC | 1 cut(s) | 592 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 317 |
| BpuEI | CTTGAG | 4 cut(s) | 45, 410, 752, 1899 |
| Bsa29I | ATCGAT | 1 cut(s) | 527 |
| BsaBI | GATNNNNATC | 2 cut(s) | 540, 1575 |
| BsaHI | GRCGYC | 1 cut(s) | 1870 |
| BsaJI | CCNNGG | 5 cut(s) | 297, 1041, 1047, 1152, 1224 |
| Bse1I | ACTGG | 2 cut(s) | 694, 1242 |
| Bse3DI | GCAATG | 3 cut(s) | 430, 819, 996 |
| Bse8I | GATNNNNATC | 2 cut(s) | 540, 1575 |
| BseBI | CCWGG | 2 cut(s) | 298, 1265 |
| BseCI | ATCGAT | 1 cut(s) | 527 |
| BseDI | CCNNGG | 5 cut(s) | 297, 1041, 1047, 1152, 1224 |
| BseGI | GGATG | 6 cut(s) | 707, 1071, 1144, 1273, 1974, 2081 |
| BseJI | GATNNNNATC | 2 cut(s) | 540, 1575 |
| BseMI | GCAATG | 3 cut(s) | 430, 819, 996 |
| BseMII | CTCAG | 9 cut(s) | 236, 276, 331, 429, 606, 1097, 1200, 1229, 2124 |
| BseNI | ACTGG | 2 cut(s) | 694, 1242 |
| BseRI | GAGGAG | 4 cut(s) | 302, 561, 1619, 1800 |
| BseSI | GKGCMC | 1 cut(s) | 376 |
| BseXI | GCAGC | 7 cut(s) | 169, 291, 787, 1032, 1219, 1228, 1771 |
| BseYI | CCCAGC | 1 cut(s) | 1069 |
| BsgI | GTGCAG | 3 cut(s) | 861, 1218, 1782 |
| BshFI | GGCC | 3 cut(s) | 1046, 1204, 1968 |
| BshNI | GGYRCC | 2 cut(s) | 479, 1869 |
| BshVI | ATCGAT | 1 cut(s) | 527 |
| BsiHKAI | GWGCWC | 4 cut(s) | 593, 655, 1146, 1648 |
| BsiHKCI | CYCGRG | 1 cut(s) | 452 |
| BslFI | GGGAC | 1 cut(s) | 1534 |
| BsmAI | GTCTC | 2 cut(s) | 1205, 1601 |
| BsmFI | GGGAC | 1 cut(s) | 1534 |
| BsmI | GAATGC | 2 cut(s) | 217, 883 |
| BsnI | GGCC | 3 cut(s) | 1046, 1204, 1968 |
| BsoBI | CYCGRG | 1 cut(s) | 452 |
| Bsp1286I | GDGCHC | 6 cut(s) | 376, 593, 655, 1146, 1648, 2139 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 317 |
| BspACI | CCGC | 2 cut(s) | 1052, 1925 |
| BspANI | GGCC | 3 cut(s) | 1046, 1204, 1968 |
| BspCNI | CTCAG | 9 cut(s) | 235, 277, 330, 428, 605, 1096, 1201, 1228, 2125 |
| BspDI | ATCGAT | 1 cut(s) | 527 |
| BspHI | TCATGA | 2 cut(s) | 441, 1273 |
| BspLI | GGNNCC | 3 cut(s) | 481, 1845, 1871 |
| BspMAI | CTGCAG | 4 cut(s) | 187, 748, 1246, 1534 |
| BspMI | ACCTGC | 4 cut(s) | 538, 639, 1235, 1789 |
| BspPI | GGATC | 5 cut(s) | 1409, 1584, 1838, 1851, 2053 |
| BspQI | GCTCTTC | 1 cut(s) | 864 |
| BspT107I | GGYRCC | 2 cut(s) | 479, 1869 |
| BsrDI | GCAATG | 3 cut(s) | 430, 819, 996 |
| BsrI | ACTGG | 2 cut(s) | 694, 1242 |
| BssECI | CCNNGG | 5 cut(s) | 297, 1041, 1047, 1152, 1224 |
| BssNI | GRCGYC | 1 cut(s) | 1870 |
| BssT1I | CCWWGG | 3 cut(s) | 1041, 1047, 1224 |
| Bst2UI | CCWGG | 2 cut(s) | 298, 1265 |
| Bst4CI | ACNGT | 4 cut(s) | 1421, 1540, 1720, 1737 |
| Bst6I | CTCTTC | 2 cut(s) | 579, 864 |
| BstACI | GRCGYC | 1 cut(s) | 1870 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 479, 1241, 1250, 1643 |
| BstC8I | GCNNGC | 4 cut(s) | 471, 651, 1353, 2180 |
| BstF5I | GGATG | 6 cut(s) | 707, 1071, 1144, 1273, 1974, 2081 |
| BstH2I | RGCGCY | 1 cut(s) | 1873 |
| BstHHI | GCGC | 1 cut(s) | 1872 |
| BstMAI | GTCTC | 2 cut(s) | 1205, 1601 |
| BstNI | CCWGG | 2 cut(s) | 298, 1265 |
| BstNSI | RCATGY | 5 cut(s) | 473, 1093, 1456, 1511, 2182 |
| BstSCI | CCNGG | 2 cut(s) | 296, 1263 |
| BstSFI | CTRYAG | 7 cut(s) | 135, 183, 464, 744, 1242, 1294, 1530 |
| BstSLI | GKGCMC | 1 cut(s) | 376 |
| BstV1I | GCAGC | 7 cut(s) | 169, 291, 787, 1032, 1219, 1228, 1771 |
| BstV2I | GAAGAC | 2 cut(s) | 53, 1731 |
| BstX2I | RGATCY | 5 cut(s) | 958, 1401, 1576, 1843, 2045 |
| BstYI | RGATCY | 5 cut(s) | 958, 1401, 1576, 1843, 2045 |
| Bsu15I | ATCGAT | 1 cut(s) | 527 |
| BsuI | GTATCC | 1 cut(s) | 304 |
| BsuRI | GGCC | 3 cut(s) | 1046, 1204, 1968 |
| BsuTUI | ATCGAT | 1 cut(s) | 527 |
| BtgZI | GCGATG | 1 cut(s) | 1969 |
| BtsCI | GGATG | 6 cut(s) | 707, 1071, 1144, 1273, 1974, 2081 |
| BtsI | GCAGTG | 4 cut(s) | 753, 1185, 1390, 1978 |
| BtsIMutI | CAGTG | 7 cut(s) | 370, 753, 1185, 1235, 1390, 1716, 1978 |
| BveI | ACCTGC | 4 cut(s) | 538, 639, 1235, 1789 |
| Cac8I | GCNNGC | 4 cut(s) | 471, 651, 1353, 2180 |
| CaiI | CAGNNNCTG | 2 cut(s) | 907, 1538 |
| CciI | TCATGA | 2 cut(s) | 441, 1273 |
| CfoI | GCGC | 1 cut(s) | 1872 |
| Cfr13I | GGNCC | 1 cut(s) | 1478 |
| ClaI | ATCGAT | 1 cut(s) | 527 |
| Csp6I | GTAC | 3 cut(s) | 410, 697, 1590 |
| CviAII | CATG | 9 cut(s) | 442, 470, 1090, 1094, 1274, 1453, 1508, 2179, 2184 |
| CviQI | GTAC | 3 cut(s) | 410, 697, 1590 |
| DinI | GGCGCC | 1 cut(s) | 1871 |
| Eam1104I | CTCTTC | 2 cut(s) | 579, 864 |
| EarI | CTCTTC | 2 cut(s) | 579, 864 |
| Ecl136II | GAGCTC | 1 cut(s) | 591 |
| Eco130I | CCWWGG | 3 cut(s) | 1041, 1047, 1224 |
| Eco24I | GRGCYC | 2 cut(s) | 593, 2139 |
| Eco47I | GGWCC | 1 cut(s) | 1478 |
| Eco53kI | GAGCTC | 1 cut(s) | 591 |
| Eco57I | CTGAAG | 5 cut(s) | 52, 654, 845, 884, 957 |
| Eco88I | CYCGRG | 1 cut(s) | 452 |
| EcoICRI | GAGCTC | 1 cut(s) | 591 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1478 |
| EcoRI | GAATTC | 2 cut(s) | 359, 1219 |
| EcoRII | CCWGG | 2 cut(s) | 296, 1263 |
| EcoT14I | CCWWGG | 3 cut(s) | 1041, 1047, 1224 |
| EcoT22I | ATGCAT | 1 cut(s) | 1095 |
| EcoT38I | GRGCYC | 2 cut(s) | 593, 2139 |
| EgeI | GGCGCC | 1 cut(s) | 1871 |
| EheI | GGCGCC | 1 cut(s) | 1871 |
| ErhI | CCWWGG | 3 cut(s) | 1041, 1047, 1224 |
| FaeI | CATG | 9 cut(s) | 445, 473, 1093, 1097, 1277, 1456, 1511, 2182, 2187 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 495, 527, 558, 590, 2006, 2038 |
| FaqI | GGGAC | 1 cut(s) | 1534 |
| FatI | CATG | 9 cut(s) | 441, 469, 1089, 1093, 1273, 1452, 1507, 2178, 2183 |
| FauNDI | CATATG | 2 cut(s) | 769, 1959 |
| FbaI | TGATCA | 1 cut(s) | 2119 |
| Fnu4HI | GCNGC | 9 cut(s) | 183, 280, 801, 1021, 1053, 1233, 1242, 1785, 1926 |
| FokI | GGATG | 6 cut(s) | 694, 1078, 1151, 1280, 1961, 2068 |
| FriOI | GRGCYC | 2 cut(s) | 593, 2139 |
| Fsp4HI | GCNGC | 9 cut(s) | 183, 280, 801, 1021, 1053, 1233, 1242, 1785, 1926 |
| FspBI | CTAG | 2 cut(s) | 33, 1743 |
| GlaI | GCGC | 1 cut(s) | 1871 |
| GluI | GCNGC | 9 cut(s) | 183, 280, 801, 1021, 1053, 1233, 1242, 1785, 1926 |
| GsaI | CCCAGC | 1 cut(s) | 1073 |
| GsuI | CTGGAG | 1 cut(s) | 929 |
| HaeII | RGCGCY | 1 cut(s) | 1873 |
| HaeIII | GGCC | 3 cut(s) | 1046, 1204, 1968 |
| HhaI | GCGC | 1 cut(s) | 1872 |
| Hin1I | GRCGYC | 1 cut(s) | 1870 |
| Hin1II | CATG | 9 cut(s) | 445, 473, 1093, 1097, 1277, 1456, 1511, 2182, 2187 |
| Hin6I | GCGC | 1 cut(s) | 1870 |
| HinP1I | GCGC | 1 cut(s) | 1870 |
| HincII | GTYRAC | 2 cut(s) | 741, 2077 |
| HindII | GTYRAC | 2 cut(s) | 741, 2077 |
| HindIII | AAGCTT | 2 cut(s) | 728, 1820 |
| HinfI | GANTC | 7 cut(s) | 346, 445, 830, 985, 1213, 1526, 1557 |
| HphI | GGTGA | 3 cut(s) | 655, 1253, 1714 |
| Hpy166II | GTNNAC | 5 cut(s) | 741, 1339, 1458, 1778, 2077 |
| Hpy188III | TCNNGA | 9 cut(s) | 442, 594, 602, 778, 908, 989, 1085, 1274, 1951 |
| Hpy8I | GTNNAC | 5 cut(s) | 741, 1339, 1458, 1778, 2077 |
| HpyAV | CCTTC | 5 cut(s) | 266, 913, 1594, 1812, 2036 |
| HpyCH4III | ACNGT | 4 cut(s) | 1421, 1540, 1720, 1737 |
| Hsp92I | GRCGYC | 1 cut(s) | 1870 |
| Hsp92II | CATG | 9 cut(s) | 445, 473, 1093, 1097, 1277, 1456, 1511, 2182, 2187 |
| HspAI | GCGC | 1 cut(s) | 1870 |
| KasI | GGCGCC | 1 cut(s) | 1869 |
| Ksp22I | TGATCA | 1 cut(s) | 2119 |
| LguI | GCTCTTC | 1 cut(s) | 864 |
| LmnI | GCTCC | 7 cut(s) | 574, 658, 1229, 1651, 1735, 1792, 1798 |
| Lsp1109I | GCAGC | 7 cut(s) | 169, 291, 787, 1032, 1219, 1228, 1771 |
| LweI | GCATC | 6 cut(s) | 636, 643, 1056, 1087, 1717, 1992 |
| MaeI | CTAG | 2 cut(s) | 33, 1743 |
| MaeIII | GTNAC | 2 cut(s) | 778, 928 |
| MfeI | CAATTG | 3 cut(s) | 515, 882, 1752 |
| MflI | RGATCY | 5 cut(s) | 958, 1401, 1576, 1843, 2045 |
| MhlI | GDGCHC | 6 cut(s) | 376, 593, 655, 1146, 1648, 2139 |
| Mly113I | GGCGCC | 1 cut(s) | 1870 |
| MlyI | GAGTC | 4 cut(s) | 839, 994, 1207, 1566 |
| MmeI | TCCRAC | 1 cut(s) | 1871 |
| Mph1103I | ATGCAT | 1 cut(s) | 1095 |
| MseI | TTAA | 6 cut(s) | 564, 1197, 1416, 1586, 1824, 1908 |
| MslI | CAYNNNNRTG | 3 cut(s) | 474, 1178, 1266 |
| MspR9I | CCNGG | 2 cut(s) | 298, 1265 |
| MunI | CAATTG | 3 cut(s) | 515, 882, 1752 |
| Mva1269I | GAATGC | 2 cut(s) | 217, 883 |
| MvaI | CCWGG | 2 cut(s) | 298, 1265 |
| NarI | GGCGCC | 1 cut(s) | 1870 |
| NdeI | CATATG | 2 cut(s) | 769, 1959 |
| NlaIII | CATG | 9 cut(s) | 445, 473, 1093, 1097, 1277, 1456, 1511, 2182, 2187 |
| NlaIV | GGNNCC | 3 cut(s) | 481, 1845, 1871 |
| NmeAIII | GCCGAG | 1 cut(s) | 1177 |
| NmuCI | GTSAC | 1 cut(s) | 778 |
| NsiI | ATGCAT | 1 cut(s) | 1095 |
| NspI | RCATGY | 5 cut(s) | 473, 1093, 1456, 1511, 2182 |
| OliI | CACNNNNGTG | 1 cut(s) | 1178 |
| PaeI | GCATGC | 2 cut(s) | 473, 2182 |
| PaeR7I | CTCGAG | 1 cut(s) | 452 |
| PagI | TCATGA | 2 cut(s) | 441, 1273 |
| PaqCI | CACCTGC | 1 cut(s) | 639 |
| PciI | ACATGT | 2 cut(s) | 1452, 1507 |
| PciSI | GCTCTTC | 1 cut(s) | 864 |
| PctI | GAATGC | 2 cut(s) | 217, 883 |
| PfeI | GAWTC | 3 cut(s) | 346, 445, 1526 |
| PkrI | GCNGC | 9 cut(s) | 184, 281, 802, 1022, 1054, 1234, 1243, 1786, 1927 |
| PleI | GAGTC | 4 cut(s) | 838, 993, 1207, 1565 |
| PluTI | GGCGCC | 1 cut(s) | 1873 |
| PpsI | GAGTC | 4 cut(s) | 838, 993, 1207, 1565 |
| PpuMI | RGGWCCY | 1 cut(s) | 1478 |
| PscI | ACATGT | 2 cut(s) | 1452, 1507 |
| Psp124BI | GAGCTC | 1 cut(s) | 593 |
| Psp5II | RGGWCCY | 1 cut(s) | 1478 |
| Psp6I | CCWGG | 2 cut(s) | 296, 1263 |
| PspFI | CCCAGC | 1 cut(s) | 1069 |
| PspGI | CCWGG | 2 cut(s) | 296, 1263 |
| PspN4I | GGNNCC | 3 cut(s) | 481, 1845, 1871 |
| PspPI | GGNCC | 1 cut(s) | 1478 |
| PspPPI | RGGWCCY | 1 cut(s) | 1478 |
| PspXI | VCTCGAGB | 1 cut(s) | 452 |
| PstI | CTGCAG | 4 cut(s) | 187, 748, 1246, 1534 |
| PstNI | CAGNNNCTG | 2 cut(s) | 907, 1538 |
| PsuI | RGATCY | 5 cut(s) | 958, 1401, 1576, 1843, 2045 |
| RsaI | GTAC | 3 cut(s) | 411, 698, 1591 |
| RsaNI | GTAC | 3 cut(s) | 410, 697, 1590 |
| RseI | CAYNNNNRTG | 3 cut(s) | 474, 1178, 1266 |
| SacI | GAGCTC | 1 cut(s) | 593 |
| SapI | GCTCTTC | 1 cut(s) | 864 |
| SaqAI | TTAA | 6 cut(s) | 564, 1197, 1416, 1586, 1824, 1908 |
| SatI | GCNGC | 9 cut(s) | 183, 280, 801, 1021, 1053, 1233, 1242, 1785, 1926 |
| Sau96I | GGNCC | 1 cut(s) | 1478 |
| SchI | GAGTC | 4 cut(s) | 839, 994, 1207, 1566 |
| ScrFI | CCNGG | 2 cut(s) | 298, 1265 |
| SduI | GDGCHC | 6 cut(s) | 376, 593, 655, 1146, 1648, 2139 |
| SfaNI | GCATC | 6 cut(s) | 636, 643, 1056, 1087, 1717, 1992 |
| SfcI | CTRYAG | 7 cut(s) | 135, 183, 464, 744, 1242, 1294, 1530 |
| SfoI | GGCGCC | 1 cut(s) | 1871 |
| Sfr274I | CTCGAG | 1 cut(s) | 452 |
| SinI | GGWCC | 1 cut(s) | 1478 |
| SlaI | CTCGAG | 1 cut(s) | 452 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 474, 1178, 1266 |
| SmlI | CTYRAG | 5 cut(s) | 60, 389, 452, 731, 1914 |
| SmoI | CTYRAG | 5 cut(s) | 60, 389, 452, 731, 1914 |
| SphI | GCATGC | 2 cut(s) | 473, 2182 |
| SsiI | CCGC | 2 cut(s) | 1052, 1925 |
| SspDI | GGCGCC | 1 cut(s) | 1869 |
| SspMI | CTAG | 2 cut(s) | 33, 1743 |
| SstI | GAGCTC | 1 cut(s) | 593 |
| StyD4I | CCNGG | 2 cut(s) | 296, 1263 |
| StyI | CCWWGG | 3 cut(s) | 1041, 1047, 1224 |
| TaaI | ACNGT | 4 cut(s) | 1421, 1540, 1720, 1737 |
| TaqI | TCGA | 4 cut(s) | 453, 527, 1485, 1560 |
| TatI | WGTACW | 2 cut(s) | 696, 1589 |
| TauI | GCSGC | 2 cut(s) | 1055, 1928 |
| TfiI | GAWTC | 3 cut(s) | 346, 445, 1526 |
| Tru1I | TTAA | 6 cut(s) | 564, 1197, 1416, 1586, 1824, 1908 |
| Tru9I | TTAA | 6 cut(s) | 564, 1197, 1416, 1586, 1824, 1908 |
| TscAI | CASTG | 7 cut(s) | 370, 753, 1185, 1242, 1390, 1723, 1985 |
| TseFI | GTSAC | 1 cut(s) | 778 |
| TseI | GCWGC | 7 cut(s) | 182, 279, 800, 1020, 1232, 1241, 1784 |
| Tsp45I | GTSAC | 1 cut(s) | 778 |
| TspDTI | ATGAA | 9 cut(s) | 4, 458, 530, 649, 786, 1199, 1262, 1425, 2133 |
| TspGWI | ACGGA | 3 cut(s) | 797, 827, 1538 |
| TspRI | CASTG | 7 cut(s) | 370, 753, 1185, 1242, 1390, 1723, 1985 |
| VpaK11BI | GGWCC | 1 cut(s) | 1478 |
| XapI | RAATTY | 8 cut(s) | 145, 198, 309, 359, 1219, 1412, 1711, 2171 |
| XceI | RCATGY | 5 cut(s) | 473, 1093, 1456, 1511, 2182 |
| XhoI | CTCGAG | 1 cut(s) | 452 |
| XspI | CTAG | 2 cut(s) | 33, 1743 |
| Zsp2I | ATGCAT | 1 cut(s) | 1095 |