Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010484

Physical Location & Seq

Genomic Coordinates Forward (+)

3741782 .. 3743994

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAGAAGAAACGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTATCAGATCCTTACTACTTCCTCCATTTCATGGCCTTTTTCTCTTACCTCCCGATTCGTAGCTCCGCCGCACCGTACACTTCTCATCGACTCTTCGACAGAGAAATCCAAGCATTTCTAGCGTTTCTTATGTTTTCCGCCATTAAGATGGTGAGGGAGGAAACATGGGAAGCTTTCGTTGCTGATAGTTTACTCTATGCTAAGATCTTTCTTATTGCGGTTTCGTTGATTATGGATTATCGAGTGGCGGTCTGGTTTAGTATCATATTTTCAGTTATATATCTATTAGCTCAACAACCAGCATTTAGTAAACTAGGAACTGCGAAGAAGCTAACACCTATGCAGTTGGAGGATTTGTTATCAGATGGTAACACAACAAAATACTGGTTGATAGAATTCTTTGCATGTAGTTCATCCAAGTGTGTTCGTTCTAGCCGTTGCTTTCCTGAGCTCTCCATCACGTACTCGAATAATCTTTTGTCTTTTGGAACTGTCGATCTTGGACTTTTCCCTAATACTGCGGCAAAGTTTGGAATATCTCTTGCTGGTGGAATGTCTCAGCTTCCCACATACATATTGTTTGAAAAGGGTGTCGAAGTTTCTCGGTTCCCAGACTTTTATGTTGACGCTGCACCTTCTTTACCCATAACCAAGAAACTTTTGTGTCAACATTTTGAGCTTGATCGGCTTCTGCTCGACTATATAAACGGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

28.8

Weight (kDa)

6.83

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11640 AT5G11640
fragaria_vesca	FvH4_2g35350 FvH4_2g35350
malus_domestica	MD08G1113000.v1.1 MD15G1092400.v1.1
prunus_persica	Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1
pyrus_communis	pycom08g09370 pycom08g09380 pycom110g00040 pycom110g00050
rosa_chinensis	RchiOBHm_Chr6g0306561
rosa_laevigata	RLG00000010785
rosa_samantha	Rh6AG462800 Rh6BG438000 Rh6CG477000 Rh6DG463600
rosa_wichuraiana	Rw6G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccII	CGCG	1 cut(s)	15
AciI	CCGC	6 cut(s)	111, 114, 183, 263, 293, 566
AclWI	GGATC	2 cut(s)	47, 50
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	2 cut(s)	122, 509
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	629
AluBI	AGCT	7 cut(s)	108, 218, 335, 376, 496, 607, 724
AluI	AGCT	7 cut(s)	108, 218, 335, 376, 496, 607, 724
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	1 cut(s)	606
AlwI	GGATC	2 cut(s)	47, 50
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	674
ApoI	RAATTY	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	1 cut(s)	661
BccI	CCATC	3 cut(s)	187, 404, 509
BceAI	ACGGC	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	606
BfaI	CTAG	3 cut(s)	164, 359, 477
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	3 cut(s)	114, 567, 675
BlsI	GCNGC	3 cut(s)	115, 568, 676
BmiI	GGNNCC	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	492
BsaAI	YACGTR	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	434
BseGI	GGATG	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	483, 617
BseNI	ACTGG	1 cut(s)	434
BseXI	GCAGC	1 cut(s)	661
BsgI	GTGCAG	1 cut(s)	660
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	498
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	606
BsnI	GGCC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	5 cut(s)	42, 52, 249, 541, 727
BspACI	CCGC	6 cut(s)	111, 114, 183, 263, 293, 566
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	2 cut(s)	484, 616
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	653
BspPI	GGATC	2 cut(s)	47, 50
BsrI	ACTGG	1 cut(s)	434
BssMI	GATC	5 cut(s)	42, 52, 249, 541, 727
Bst4CI	ACNGT	2 cut(s)	120, 538
Bst6I	CTCTTC	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	507
BstDEI	CTNAG	3 cut(s)	246, 492, 603
BstF5I	GGATG	1 cut(s)	458
BstFNI	CGCG	1 cut(s)	15
BstKTI	GATC	5 cut(s)	45, 55, 252, 544, 730
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	5 cut(s)	42, 52, 249, 541, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 224, 730
BstNSI	RCATGY	1 cut(s)	453
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	661
BstX2I	RGATCY	2 cut(s)	52, 249
BstXI	CCANNNNNNTGG	1 cut(s)	193
BstYI	RGATCY	2 cut(s)	52, 249
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	458
CseI	GACGC	1 cut(s)	680
Csp6I	GTAC	2 cut(s)	121, 508
CviAII	CATG	3 cut(s)	76, 210, 450
CviQI	GTAC	2 cut(s)	121, 508
DdeI	CTNAG	3 cut(s)	246, 492, 603
DpnI	GATC	5 cut(s)	44, 54, 251, 543, 729
DpnII	GATC	5 cut(s)	42, 52, 249, 541, 727
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
EciI	GGCGGA	2 cut(s)	100, 172
Ecl136II	GAGCTC	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	498
Eco53kI	GAGCTC	1 cut(s)	496
EcoICRI	GAGCTC	1 cut(s)	496
EcoRI	GAATTC	1 cut(s)	440
EcoT38I	GRGCYC	1 cut(s)	498
FaeI	CATG	3 cut(s)	79, 213, 453
FatI	CATG	3 cut(s)	75, 209, 449
Fnu4HI	GCNGC	3 cut(s)	114, 567, 675
FokI	GGATG	1 cut(s)	445
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	3 cut(s)	114, 567, 675
FspBI	CTAG	3 cut(s)	164, 359, 477
GluI	GCNGC	3 cut(s)	114, 567, 675
HaeIII	GGCC	1 cut(s)	80
HgaI	GACGC	1 cut(s)	680
Hin1II	CATG	3 cut(s)	79, 213, 453
HincII	GTYRAC	2 cut(s)	670, 713
HindII	GTYRAC	2 cut(s)	670, 713
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	3 cut(s)	37, 100, 135
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	5 cut(s)	123, 236, 356, 670, 713
Hpy188I	TCNGA	3 cut(s)	42, 52, 409
Hpy188III	TCNNGA	2 cut(s)	97, 491
Hpy8I	GTNNAC	5 cut(s)	123, 236, 356, 670, 713
HpyAV	CCTTC	3 cut(s)	11, 23, 690
HpyCH4III	ACNGT	2 cut(s)	120, 538
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	3 cut(s)	388, 449, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 224, 730
HpyF3I	CTNAG	3 cut(s)	246, 492, 603
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	3 cut(s)	79, 213, 453
Kzo9I	GATC	5 cut(s)	42, 52, 249, 541, 727
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	6 cut(s)	283, 357, 415, 504, 576, 669
Lsp1109I	GCAGC	1 cut(s)	661
MaeI	CTAG	3 cut(s)	164, 359, 477
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	5 cut(s)	44, 54, 251, 543, 729
MboI	GATC	5 cut(s)	42, 52, 249, 541, 727
MboII	GAAGA	3 cut(s)	19, 130, 382
MflI	RGATCY	2 cut(s)	52, 249
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	1 cut(s)	440
MlyI	GAGTC	2 cut(s)	46, 129
MmeI	TCCRAC	2 cut(s)	20, 372
MnlI	CCTC	5 cut(s)	77, 104, 192, 196, 388
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	2 cut(s)	191, 463
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	164, 224, 730
NdeII	GATC	5 cut(s)	42, 52, 249, 541, 727
NlaIII	CATG	3 cut(s)	79, 213, 453
NlaIV	GGNNCC	1 cut(s)	653
NspI	RCATGY	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	115, 568, 676
PleI	GAGTC	2 cut(s)	45, 129
PpsI	GAGTC	2 cut(s)	45, 129
Ppu21I	YACGTR	1 cut(s)	507
Psp124BI	GAGCTC	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	653
PsuI	RGATCY	2 cut(s)	52, 249
RsaI	GTAC	2 cut(s)	122, 509
RsaNI	GTAC	2 cut(s)	121, 508
RseI	CAYNNNNRTG	2 cut(s)	191, 463
SacI	GAGCTC	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	3 cut(s)	114, 567, 675
Sau3AI	GATC	5 cut(s)	42, 52, 249, 541, 727
SchI	GAGTC	2 cut(s)	46, 129
SduI	GDGCHC	1 cut(s)	498
SmiMI	CAYNNNNRTG	2 cut(s)	191, 463
Sse9I	AATT	1 cut(s)	440
SsiI	CCGC	6 cut(s)	111, 114, 183, 263, 293, 566
SspMI	CTAG	3 cut(s)	164, 359, 477
SstI	GAGCTC	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	120, 538
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	8 cut(s)	27, 133, 141, 286, 512, 540, 639, 741
TasI	AATT	1 cut(s)	440
TauI	GCSGC	2 cut(s)	116, 569
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseI	GCWGC	1 cut(s)	674
TspDTI	ATGAA	2 cut(s)	64, 447
Van91I	CCANNNNNTGG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	453
XspI	CTAG	3 cut(s)	164, 359, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.