Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010484

Physical Location & Seq

Genomic Coordinates Reverse (-)

10024047 .. 10033830

Gene Structure 9784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1113000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAGCGGGGCTTTGTGCATTGCGATGGAGCACTGAAATTCTCAGAGCTTGAACCGGAGTCAGATCGAGCGCGAAATTACAGAGAGAGATTCAGAGCAATGGAGAAGAAGCAAAGCAGACCAATGGAGCTGTTAAACGCGATGGTATCAGAGCCATACTATCTGCTCCATTTCTTAACTTTCTTCTCCTACCTCGTCCTCCGCACCTCCGCCGCCCATGTCCTCTCCGCCCACATCACCGATCACCTCCTCCACCGAGAAATTCAAGCGGCTTTGACATTTGGGCTCTTGACTGCAATCAAGATGGTGAGGGAAGAAACTTTGGAAGGACTTATTGCTGATTCACTCTTTTTTGCAAAGATTTTTCTTATCGGTCTCACTTTAATTCTGGACCGCCACTTGACTCTCTGGTACGTTGTGGCGTTTACAGTGATATATATTTTCACACAACAACCCGCCTTTCAAAAATTAGGTACTTCTAGTAAATTGACACCGCTGCAGTTAGAAAGCTTGCTGACTGAAGGGAGCACGTCAAAACATTGGCTGATTGAATTTCGTGCCTCTTACTCTCTTGCTTGCATACGCTCAAGTCGGTGCTTTCCTGAGCTTTCAATTACATACTCCAACAAAAATTTCTCTTTTGGAATAGTTGACCTCGGACTCTTCCCAAATGCATCCCAGTACTTTGGAATATCGCTTTCTGGGAGCATGGGCCAACTTCCTACCTATGTCTTTTTCACGAATGGAGCTGAAGTTGCACGGTATCCACAACTAGAATCTCAAGCAAAAGCATTTCGTGATCCCATAACTAAGAAATTCCTTTCGGGGCACTTTAAGCTTGACAAGCACCTTCTTGAGTATATAAACGGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

33.28

Weight (kDa)

9.12

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11640 AT5G11640
fragaria_vesca	FvH4_2g35350 FvH4_2g35350
malus_domestica	MD08G1113000.v1.1 MD15G1092400.v1.1
prunus_persica	Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1
pyrus_communis	pycom08g09370 pycom08g09380 pycom110g00040 pycom110g00050
rosa_chinensis	RchiOBHm_Chr6g0306561
rosa_laevigata	RLG00000010785
rosa_samantha	Rh6AG462800 Rh6BG438000 Rh6CG477000 Rh6DG463600
rosa_wichuraiana	Rw6G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	73, 140
AciI	CCGC	9 cut(s)	7, 202, 210, 213, 228, 269, 394, 456, 494
AclWI	GGATC	1 cut(s)	794
AcsI	RAATTY	5 cut(s)	38, 261, 551, 631, 815
AcuI	CTGAAG	2 cut(s)	540, 771
AfaI	GTAC	3 cut(s)	413, 475, 683
AgsI	TTSAA	5 cut(s)	53, 266, 464, 551, 612
AjiI	CACGTC	1 cut(s)	531
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	6 cut(s)	49, 130, 510, 607, 749, 838
AluI	AGCT	6 cut(s)	49, 130, 510, 607, 749, 838
Alw21I	GWGCWC	2 cut(s)	34, 530
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	1 cut(s)	794
AoxI	GGCC	1 cut(s)	712
ApeKI	GCWGC	1 cut(s)	496
ApoI	RAATTY	5 cut(s)	38, 261, 551, 631, 815
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	391, 712
AsuHPI	GGTGA	3 cut(s)	229, 236, 319
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	831
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	34, 530
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	3 cut(s)	20, 136, 298
BciVI	GTATCC	1 cut(s)	774
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	2 cut(s)	480, 773
BfmI	CTRYAG	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	774
BisI	GCNGC	3 cut(s)	213, 270, 497
BlsI	GCNGC	3 cut(s)	214, 271, 498
BmcAI	AGTACT	1 cut(s)	683
Bme18I	GGWCC	1 cut(s)	391
BmgBI	CACGTC	1 cut(s)	531
BmgT120I	GGNCC	2 cut(s)	391, 712
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	1 cut(s)	683
BmuI	ACTGGG	1 cut(s)	673
Bpu10I	CCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	3 cut(s)	571, 765, 875
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	655
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	2 cut(s)	19, 105
BseDI	CCNNGG	1 cut(s)	655
BseGI	GGATG	1 cut(s)	674
BseMI	GCAATG	2 cut(s)	19, 105
BseMII	CTCAG	2 cut(s)	57, 594
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	1 cut(s)	831
BseXI	GCAGC	1 cut(s)	483
Bsh1236I	CGCG	2 cut(s)	73, 140
BshFI	GGCC	1 cut(s)	714
BsiHKAI	GWGCWC	2 cut(s)	34, 530
BsiSI	CCGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	380
BsnI	GGCC	1 cut(s)	714
Bso31I	GGTCTC	1 cut(s)	380
Bsp1286I	GDGCHC	4 cut(s)	34, 288, 530, 831
Bsp143I	GATC	3 cut(s)	64, 241, 799
BspACI	CCGC	9 cut(s)	7, 202, 210, 213, 228, 269, 394, 456, 494
BspANI	GGCC	1 cut(s)	714
BspCNI	CTCAG	2 cut(s)	56, 595
BspFNI	CGCG	2 cut(s)	73, 140
BspMAI	CTGCAG	1 cut(s)	501
BspPI	GGATC	1 cut(s)	794
BspTNI	GGTCTC	1 cut(s)	380
BsrDI	GCAATG	2 cut(s)	19, 105
BsrI	ACTGG	1 cut(s)	679
BssECI	CCNNGG	1 cut(s)	655
BssMI	GATC	3 cut(s)	64, 241, 799
Bst4CI	ACNGT	3 cut(s)	430, 762, 869
Bst6I	CTCTTC	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	512, 577
BstDEI	CTNAG	3 cut(s)	43, 603, 810
BstF5I	GGATG	1 cut(s)	674
BstFNI	CGCG	2 cut(s)	73, 140
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	3 cut(s)	67, 244, 802
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	3 cut(s)	64, 241, 799
BstMWI	GCNNNNNNNGC	3 cut(s)	755, 835, 844
BstSFI	CTRYAG	1 cut(s)	497
BstSLI	GKGCMC	1 cut(s)	831
BstUI	CGCG	2 cut(s)	73, 140
BstV1I	GCAGC	1 cut(s)	483
BstXI	CCANNNNNNTGG	1 cut(s)	686
BsuI	GTATCC	1 cut(s)	774
BsuRI	GGCC	1 cut(s)	714
BtgZI	GCGATG	2 cut(s)	39, 155
BtrI	CACGTC	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	674
BtsIMutI	CAGTG	2 cut(s)	32, 435
Cac8I	GCNNGC	2 cut(s)	512, 577
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	391, 712
Csp6I	GTAC	3 cut(s)	412, 474, 682
CviAII	CATG	2 cut(s)	218, 709
CviQI	GTAC	3 cut(s)	412, 474, 682
DdeI	CTNAG	3 cut(s)	43, 603, 810
DpnI	GATC	3 cut(s)	66, 243, 801
DpnII	GATC	3 cut(s)	64, 241, 799
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
EciI	GGCGGA	2 cut(s)	199, 217
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	391
Eco57I	CTGAAG	2 cut(s)	540, 771
EcoT22I	ATGCAT	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	2 cut(s)	221, 712
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	2 cut(s)	217, 708
FauI	CCCGC	1 cut(s)	463
Fnu4HI	GCNGC	3 cut(s)	213, 270, 497
FokI	GGATG	1 cut(s)	661
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	3 cut(s)	213, 270, 497
FspBI	CTAG	2 cut(s)	480, 773
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	3 cut(s)	213, 270, 497
HaeIII	GGCC	1 cut(s)	714
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	221, 712
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HindIII	AAGCTT	2 cut(s)	508, 836
HinfI	GANTC	6 cut(s)	59, 90, 341, 403, 660, 776
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	3 cut(s)	229, 236, 319
Hpy166II	GTNNAC	2 cut(s)	426, 652
Hpy188I	TCNGA	5 cut(s)	46, 64, 95, 151, 659
Hpy188III	TCNNGA	7 cut(s)	289, 301, 389, 602, 739, 797, 854
Hpy8I	GTNNAC	2 cut(s)	426, 652
HpyAV	CCTTC	3 cut(s)	320, 515, 860
HpyCH4III	ACNGT	3 cut(s)	430, 762, 869
HpyCH4IV	ACGT	2 cut(s)	414, 530
HpyCH4V	TGCA	7 cut(s)	19, 296, 356, 499, 579, 674, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	755, 835, 844
HpyF3I	CTNAG	3 cut(s)	43, 603, 810
HpySE526I	ACGT	2 cut(s)	414, 530
Hsp92II	CATG	2 cut(s)	221, 712
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	3 cut(s)	64, 241, 799
LmnI	GCTCC	6 cut(s)	29, 127, 171, 525, 705, 746
LpnPI	CCDG	6 cut(s)	69, 374, 394, 615, 687, 692
Lsp1109I	GCAGC	1 cut(s)	483
LweI	GCATC	1 cut(s)	683
MaeI	CTAG	2 cut(s)	480, 773
MaeII	ACGT	2 cut(s)	414, 530
MalI	GATC	3 cut(s)	66, 243, 801
MboI	GATC	3 cut(s)	64, 241, 799
MboII	GAAGA	4 cut(s)	118, 175, 326, 655
MhlI	GDGCHC	4 cut(s)	34, 288, 530, 831
MlyI	GAGTC	3 cut(s)	68, 397, 654
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	9 cut(s)	203, 209, 217, 233, 257, 260, 303, 571, 665
Mph1103I	ATGCAT	1 cut(s)	676
MseI	TTAA	4 cut(s)	134, 176, 383, 834
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	1 cut(s)	56
MvnI	CGCG	2 cut(s)	73, 140
MwoI	GCNNNNNNNGC	3 cut(s)	755, 835, 844
NdeII	GATC	3 cut(s)	64, 241, 799
NlaIII	CATG	2 cut(s)	221, 712
NsiI	ATGCAT	1 cut(s)	676
PfeI	GAWTC	3 cut(s)	90, 341, 776
PkrI	GCNGC	3 cut(s)	214, 271, 498
PleI	GAGTC	3 cut(s)	67, 397, 654
PpsI	GAGTC	3 cut(s)	67, 397, 654
PspPI	GGNCC	2 cut(s)	391, 712
PstI	CTGCAG	1 cut(s)	501
RsaI	GTAC	3 cut(s)	413, 475, 683
RsaNI	GTAC	3 cut(s)	412, 474, 682
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	4 cut(s)	134, 176, 383, 834
SatI	GCNGC	3 cut(s)	213, 270, 497
Sau3AI	GATC	3 cut(s)	64, 241, 799
Sau96I	GGNCC	2 cut(s)	391, 712
ScaI	AGTACT	1 cut(s)	683
SchI	GAGTC	3 cut(s)	68, 397, 654
SduI	GDGCHC	4 cut(s)	34, 288, 530, 831
SfaNI	GCATC	1 cut(s)	683
SfcI	CTRYAG	1 cut(s)	497
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	3 cut(s)	586, 780, 854
SmoI	CTYRAG	3 cut(s)	586, 780, 854
SsiI	CCGC	9 cut(s)	7, 202, 210, 213, 228, 269, 394, 456, 494
SspMI	CTAG	2 cut(s)	480, 773
TaaI	ACNGT	3 cut(s)	430, 762, 869
TaiI	ACGT	2 cut(s)	417, 533
TaqI	TCGA	1 cut(s)	67
TaqII	GACCGA	1 cut(s)	362
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	2 cut(s)	215, 272
TfiI	GAWTC	3 cut(s)	90, 341, 776
Tru1I	TTAA	4 cut(s)	134, 176, 383, 834
Tru9I	TTAA	4 cut(s)	134, 176, 383, 834
TscAI	CASTG	2 cut(s)	39, 435
TseI	GCWGC	1 cut(s)	496
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	39, 435
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	5 cut(s)	38, 261, 551, 631, 815
XspI	CTAG	2 cut(s)	480, 773
ZrmI	AGTACT	1 cut(s)	683
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.