Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010484

Physical Location & Seq

Genomic Coordinates Reverse (-)

37811168 .. 37814730

Gene Structure 3563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G447200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGACAAGAAGCAGAGCAAGCCAATGGAGCTTTTGAATACGATGGTATCAGAGCCGTACTATCTGCTCCATTTCTTGGCTTTCTTCTCCTACTTTGTCCTCCGGACCTCCGTAGTCCAAGTCCTCAATACCCACATCACCGATCGCCTCCTTCATCGAGAAATTCAAGCGGCTTTGGCATTTGGGCTCTTGACTGCCATCAAGATAGTGAGGGAAGAAACTTGGGAAGGATATATTGCTGATACGATCTTCTTTGCAAAGATTTTTGTTATTGGTCTTACTTTGATAGTGGATTACCACTTGACTCTCTGGTACATAGTGGTTTTTACAGTAATATACATTTTCACACAACAACCTGCCTTTCAAAAATTAGTTCTCTCAGGCACTTCTAGTAAATTAACACCATTGCAGTTGGAAAGCTTGCTGACTGAAGGGAGCACATCAAGACTTTGGCTGGTTGAATTTCGGGCCGCATATTCTCCTGCTTGCATACGCTCAAGTCGGTGCTTTCCTGAGCTCTCAATTACATATTCCAACAAAAATTTATCTTTTGGAATAGTTGACCTCGGACTCTTCCCAAATGCTGCAGGGTATTTTGGAATATCTGTCTCTGGGAGCATGAGCCAACTTCCTACATATGTCTTATTCTCGCATGGAGCTGAAGTTGCGCGCTATCCAGAACTAGATTTTCAAGCAAAACCTTTTGGTCCTCCCATAACTAAGAGATTTCTTTCCAGGTACTTCAAGCTTGATCGGCACCTTCTGGAGTATATAAATGGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

29.82

Weight (kDa)

8.94

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11640 AT5G11640
fragaria_vesca	FvH4_2g35350 FvH4_2g35350
malus_domestica	MD08G1113000.v1.1 MD15G1092400.v1.1
prunus_persica	Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1
pyrus_communis	pycom08g09370 pycom08g09380 pycom110g00040 pycom110g00050
rosa_chinensis	RchiOBHm_Chr6g0306561
rosa_laevigata	RLG00000010785
rosa_samantha	Rh6AG462800 Rh6BG438000 Rh6CG477000 Rh6DG463600
rosa_wichuraiana	Rw6G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	756
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccII	CGCG	1 cut(s)	670
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	2 cut(s)	170, 471
AcsI	RAATTY	3 cut(s)	162, 461, 541
AcuI	CTGAAG	2 cut(s)	450, 681
AfaI	GTAC	3 cut(s)	59, 314, 740
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	6 cut(s)	37, 167, 365, 461, 692, 745
AjnI	CCWGG	1 cut(s)	734
AluBI	AGCT	5 cut(s)	31, 420, 517, 659, 748
AluI	AGCT	5 cut(s)	31, 420, 517, 659, 748
Alw21I	GWGCWC	2 cut(s)	440, 519
Alw26I	GTCTC	1 cut(s)	613
Aor13HI	TCCGGA	1 cut(s)	102
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	3 cut(s)	162, 461, 541
AspLEI	GCGC	2 cut(s)	670, 672
AspS9I	GGNCC	3 cut(s)	105, 468, 707
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	2 cut(s)	105, 707
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BanI	GGYRCC	1 cut(s)	756
BanII	GRGCYC	2 cut(s)	189, 519
Bbv12I	GWGCWC	2 cut(s)	440, 519
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	2 cut(s)	37, 206
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	736
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	2 cut(s)	390, 683
BfmI	CTRYAG	1 cut(s)	585
BfuAI	ACCTGC	1 cut(s)	364
BisI	GCNGC	3 cut(s)	171, 471, 585
BlsI	GCNGC	3 cut(s)	172, 472, 586
Bme1390I	CCNGG	1 cut(s)	736
Bme18I	GGWCC	2 cut(s)	105, 707
BmgT120I	GGNCC	3 cut(s)	105, 468, 707
BmiI	GGNNCC	1 cut(s)	758
BmrFI	CCNGG	1 cut(s)	736
BpmI	CTGGAG	1 cut(s)	785
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	565
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	404
BseAI	TCCGGA	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	736
BseDI	CCNNGG	1 cut(s)	565
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	404
BseMII	CTCAG	2 cut(s)	393, 504
BsePI	GCGCGC	1 cut(s)	668
BseXI	GCAGC	1 cut(s)	571
Bsh1236I	CGCG	1 cut(s)	670
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	470
BshNI	GGYRCC	1 cut(s)	756
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	2 cut(s)	440, 519
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	613
BsnI	GGCC	1 cut(s)	470
Bsp1286I	GDGCHC	3 cut(s)	189, 440, 519
Bsp13I	TCCGGA	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	142, 246, 751
BspACI	CCGC	2 cut(s)	170, 471
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	2 cut(s)	392, 505
BspEI	TCCGGA	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	670
BspLI	GGNNCC	1 cut(s)	758
BspMAI	CTGCAG	1 cut(s)	589
BspMI	ACCTGC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	756
BsrDI	GCAATG	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	565
BssHII	GCGCGC	1 cut(s)	668
BssMI	GATC	3 cut(s)	142, 246, 751
Bst2UI	CCWGG	1 cut(s)	736
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	578
BstC8I	GCNNGC	4 cut(s)	20, 422, 487, 670
BstDEI	CTNAG	3 cut(s)	379, 513, 720
BstFNI	CGCG	1 cut(s)	670
BstHHI	GCGC	2 cut(s)	670, 672
BstKTI	GATC	3 cut(s)	145, 249, 754
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	3 cut(s)	142, 246, 751
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 28, 176, 665, 754
BstNI	CCWGG	1 cut(s)	736
BstSCI	CCNGG	1 cut(s)	734
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	670
BstV1I	GCAGC	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	470
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	4 cut(s)	20, 422, 487, 670
CfoI	GCGC	2 cut(s)	670, 672
Cfr13I	GGNCC	3 cut(s)	105, 468, 707
Csp6I	GTAC	3 cut(s)	58, 313, 739
CviAII	CATG	2 cut(s)	619, 653
CviQI	GTAC	3 cut(s)	58, 313, 739
DdeI	CTNAG	3 cut(s)	379, 513, 720
DpnI	GATC	3 cut(s)	144, 248, 753
DpnII	GATC	3 cut(s)	142, 246, 751
Eam1104I	CTCTTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	578
Ecl136II	GAGCTC	1 cut(s)	517
Eco24I	GRGCYC	2 cut(s)	189, 519
Eco47I	GGWCC	2 cut(s)	105, 707
Eco53kI	GAGCTC	1 cut(s)	517
Eco57I	CTGAAG	2 cut(s)	450, 681
EcoICRI	GAGCTC	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	734
EcoT38I	GRGCYC	2 cut(s)	189, 519
FaeI	CATG	2 cut(s)	622, 656
FatI	CATG	2 cut(s)	618, 652
FauNDI	CATATG	1 cut(s)	637
Fnu4HI	GCNGC	3 cut(s)	171, 471, 585
FriOI	GRGCYC	2 cut(s)	189, 519
Fsp4HI	GCNGC	3 cut(s)	171, 471, 585
FspBI	CTAG	2 cut(s)	390, 683
GlaI	GCGC	2 cut(s)	669, 671
GluI	GCNGC	3 cut(s)	171, 471, 585
GsuI	CTGGAG	1 cut(s)	785
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	103
HhaI	GCGC	2 cut(s)	670, 672
Hin1II	CATG	2 cut(s)	622, 656
Hin6I	GCGC	2 cut(s)	668, 670
HinP1I	GCGC	2 cut(s)	668, 670
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	2 cut(s)	418, 746
HinfI	GANTC	2 cut(s)	304, 570
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	2 cut(s)	52, 569
Hpy188III	TCNNGA	8 cut(s)	103, 158, 190, 202, 444, 512, 677, 764
Hpy8I	GTNNAC	1 cut(s)	562
HpyAV	CCTTC	4 cut(s)	161, 221, 425, 770
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	257, 409, 489, 587
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 28, 176, 665, 754
HpyF3I	CTNAG	3 cut(s)	379, 513, 720
Hsp92II	CATG	2 cut(s)	622, 656
HspAI	GCGC	2 cut(s)	668, 670
Kpn2I	TCCGGA	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	142, 246, 751
LmnI	GCTCC	5 cut(s)	28, 72, 435, 615, 656
Lsp1109I	GCAGC	1 cut(s)	571
MaeI	CTAG	2 cut(s)	390, 683
MalI	GATC	3 cut(s)	144, 248, 753
MboI	GATC	3 cut(s)	142, 246, 751
MboII	GAAGA	4 cut(s)	76, 227, 241, 565
MhlI	GDGCHC	3 cut(s)	189, 440, 519
MluCI	AATT	6 cut(s)	162, 368, 395, 461, 522, 541
MlyI	GAGTC	2 cut(s)	298, 564
MmeI	TCCRAC	2 cut(s)	393, 558
MnlI	CCTC	7 cut(s)	110, 118, 134, 158, 204, 575, 720
MroI	TCCGGA	1 cut(s)	102
MseI	TTAA	1 cut(s)	398
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	736
MvaI	CCWGG	1 cut(s)	736
MvnI	CGCG	1 cut(s)	670
MwoI	GCNNNNNNNGC	5 cut(s)	19, 28, 176, 665, 754
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	3 cut(s)	142, 246, 751
NlaIII	CATG	2 cut(s)	622, 656
NlaIV	GGNNCC	1 cut(s)	758
PauI	GCGCGC	1 cut(s)	668
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	172, 472, 586
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	2 cut(s)	298, 564
PpsI	GAGTC	2 cut(s)	298, 564
Psp124BI	GAGCTC	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	734
PspGI	CCWGG	1 cut(s)	734
PspN4I	GGNNCC	1 cut(s)	758
PspPI	GGNCC	3 cut(s)	105, 468, 707
PstI	CTGCAG	1 cut(s)	589
PteI	GCGCGC	1 cut(s)	668
PvuI	CGATCG	1 cut(s)	145
RsaI	GTAC	3 cut(s)	59, 314, 740
RsaNI	GTAC	3 cut(s)	58, 313, 739
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	3 cut(s)	171, 471, 585
Sau3AI	GATC	3 cut(s)	142, 246, 751
Sau96I	GGNCC	3 cut(s)	105, 468, 707
SchI	GAGTC	2 cut(s)	298, 564
ScrFI	CCNGG	1 cut(s)	736
SduI	GDGCHC	3 cut(s)	189, 440, 519
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	2 cut(s)	105, 707
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
Sse9I	AATT	6 cut(s)	162, 368, 395, 461, 522, 541
SsiI	CCGC	2 cut(s)	170, 471
SspMI	CTAG	2 cut(s)	390, 683
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	1 cut(s)	734
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	157
TasI	AATT	6 cut(s)	162, 368, 395, 461, 522, 541
TauI	GCSGC	2 cut(s)	173, 473
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TseI	GCWGC	1 cut(s)	584
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	2 cut(s)	105, 707
XapI	RAATTY	3 cut(s)	162, 461, 541
XspI	CTAG	2 cut(s)	390, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.