Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010484

Physical Location & Seq

Genomic Coordinates Forward (+)

4329346 .. 4331407

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010785

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGAAGAAGCAAAGCAAACCAATGGAGTTGTTAAACGAGATGGTATCAGAGCCTTACCATCTCCTCCATTTCTTGGCCTTCTTCTCTTACTTTGTAATTCGCACTTCCGCTGCCCAAGTCCTCTCTCCCCAAATCACCTCCCGTCTCTTTCTCCGAGAAATCCAAGCCGCTTTGGCCTTGGGTGTCTACGCTGCCTTCAAGGTTGTGAGGGAAGAAAACTGGGAGGCTTTTATTTCAGATACTCTCTTCTTTGCAAAGATTTTTCTTCTTGCCCTTACTTTGATAATGGATTACCACTTGACTCTCTGGTACACAGTGATATTTGCAGGGATATATATTTTCACACAACAGCCGGCCTTTAAAAAATTAGGTACTTCCAGTAAAATAACACCATTGCAGCTGGAAAGCTTGCTGACCGAAGGGAGCACATCGAGACTTTGGCTGGTTGAATTCCGTGCTGCATATTCACCTTCTTGCATACGCTCAAGTCGGTGCTTTTCTGAGCTTTCAATCACATATTCAAACAAAAGCTTTTCTTTTGGAGTAGTTAACCTTGGCCTCTTCCCAAATGCTGCAGAGTTTTTTGGAATATCACTCTCTGGAAGCATGGGTCAACTTCCTGCATATATATTATTCTCGCATGGATCTGAAGTTGCTCGCTATCCGGACTTAGATGTTGAATCAAAAGGTTCTCATTCCCCCATAACCAAGAGATTTCTTTCGCAGTACTTCAAACTTGACCTGCACCTTCTTGAGTATGTAAATGGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

29.3

Weight (kDa)

8.42

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11640 AT5G11640
fragaria_vesca	FvH4_2g35350 FvH4_2g35350
malus_domestica	MD08G1113000.v1.1 MD15G1092400.v1.1
prunus_persica	Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1
pyrus_communis	pycom08g09370 pycom08g09380 pycom110g00040 pycom110g00050
rosa_chinensis	RchiOBHm_Chr6g0306561
rosa_laevigata	RLG00000010785
rosa_samantha	Rh6AG462800 Rh6BG438000 Rh6CG477000 Rh6DG463600
rosa_wichuraiana	Rw6G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	753
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	667
AciI	CCGC	2 cut(s)	111, 171
AclWI	GGATC	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	3 cut(s)	314, 376, 731
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	6 cut(s)	202, 452, 513, 525, 683, 736
AluBI	AGCT	4 cut(s)	403, 411, 508, 534
AluI	AGCT	4 cut(s)	403, 411, 508, 534
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	2 cut(s)	152, 430
AlwI	GGATC	1 cut(s)	655
Aor13HI	TCCGGA	1 cut(s)	667
AoxI	GGCC	4 cut(s)	78, 177, 357, 559
ApeKI	GCWGC	5 cut(s)	113, 194, 400, 461, 575
ApoI	RAATTY	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	130, 462
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	5 cut(s)	100, 181, 412, 448, 562
BccI	CCATC	2 cut(s)	37, 69
BcoDI	GTCTC	2 cut(s)	152, 430
BfmI	CTRYAG	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	753
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	6 cut(s)	114, 171, 195, 401, 462, 576
BlsI	GCNGC	6 cut(s)	115, 172, 196, 402, 463, 577
BmcAI	AGTACT	1 cut(s)	731
BmrI	ACTGGG	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	232
BpuEI	CTTGAG	2 cut(s)	472, 776
BsaJI	CCNNGG	2 cut(s)	180, 556
BsaWI	WCCGGW	1 cut(s)	667
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	2 cut(s)	227, 381
Bse3DI	GCAATG	1 cut(s)	395
BseAI	TCCGGA	1 cut(s)	667
BseDI	CCNNGG	2 cut(s)	180, 556
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	227, 381
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	5 cut(s)	100, 181, 412, 448, 562
BsgI	GTGCAG	1 cut(s)	731
BshFI	GGCC	4 cut(s)	80, 179, 359, 561
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	356, 668
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	2 cut(s)	152, 430
BsmBI	CGTCTC	1 cut(s)	152
BsnI	GGCC	4 cut(s)	80, 179, 359, 561
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp13I	TCCGGA	1 cut(s)	667
Bsp143I	GATC	1 cut(s)	647
BspACI	CCGC	2 cut(s)	111, 171
BspANI	GGCC	4 cut(s)	80, 179, 359, 561
BspCNI	CTCAG	1 cut(s)	496
BspEI	TCCGGA	1 cut(s)	667
BspMAI	CTGCAG	1 cut(s)	580
BspMI	ACCTGC	1 cut(s)	753
BspPI	GGATC	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	355
BsrI	ACTGG	2 cut(s)	227, 381
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	180, 556
BssMI	GATC	1 cut(s)	647
BssT1I	CCWWGG	2 cut(s)	180, 556
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	2 cut(s)	254, 569
BstC8I	GCNNGC	3 cut(s)	357, 413, 661
BstDEI	CTNAG	2 cut(s)	504, 673
BstKTI	GATC	1 cut(s)	650
BstMAI	GTCTC	2 cut(s)	152, 430
BstMBI	GATC	1 cut(s)	647
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	5 cut(s)	100, 181, 412, 448, 562
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BsuRI	GGCC	4 cut(s)	80, 179, 359, 561
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	753
Cac8I	GCNNGC	3 cut(s)	357, 413, 661
Cfr10I	RCCGGY	1 cut(s)	355
Csp6I	GTAC	3 cut(s)	313, 375, 730
CviAII	CATG	2 cut(s)	610, 644
CviQI	GTAC	3 cut(s)	313, 375, 730
DdeI	CTNAG	2 cut(s)	504, 673
DpnI	GATC	1 cut(s)	649
DpnII	GATC	1 cut(s)	647
DraI	TTTAAA	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	254, 569
EarI	CTCTTC	2 cut(s)	254, 569
Eco130I	CCWWGG	2 cut(s)	180, 556
Eco57I	CTGAAG	1 cut(s)	672
EcoRI	GAATTC	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	180, 556
ErhI	CCWWGG	2 cut(s)	180, 556
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	613, 647
FalI	AAGNNNNNCTT	2 cut(s)	523, 555
FatI	CATG	2 cut(s)	609, 643
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	6 cut(s)	114, 171, 195, 401, 462, 576
Fsp4HI	GCNGC	6 cut(s)	114, 171, 195, 401, 462, 576
GluI	GCNGC	6 cut(s)	114, 171, 195, 401, 462, 576
HaeIII	GGCC	4 cut(s)	80, 179, 359, 561
HapII	CCGG	2 cut(s)	356, 668
Hin1II	CATG	2 cut(s)	613, 647
HincII	GTYRAC	2 cut(s)	553, 617
HindII	GTYRAC	2 cut(s)	553, 617
HindIII	AAGCTT	2 cut(s)	409, 532
HinfI	GANTC	2 cut(s)	304, 683
HpaI	GTTAAC	1 cut(s)	553
HpaII	CCGG	2 cut(s)	356, 668
HphI	GGTGA	2 cut(s)	130, 462
Hpy166II	GTNNAC	4 cut(s)	190, 315, 553, 617
Hpy188I	TCNGA	5 cut(s)	52, 158, 241, 505, 652
Hpy188III	TCNNGA	4 cut(s)	435, 603, 668, 755
Hpy8I	GTNNAC	4 cut(s)	190, 315, 553, 617
HpyAV	CCTTC	5 cut(s)	91, 208, 416, 483, 761
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	8 cut(s)	257, 329, 400, 464, 480, 578, 626, 748
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	504, 673
Hsp92II	CATG	2 cut(s)	613, 647
Kpn2I	TCCGGA	1 cut(s)	667
KroI	GCCGGC	1 cut(s)	355
KroNI	GCCGGC	1 cut(s)	357
KspAI	GTTAAC	1 cut(s)	553
Kzo9I	GATC	1 cut(s)	647
LmnI	GCTCC	1 cut(s)	426
Lsp1109I	GCAGC	5 cut(s)	100, 181, 412, 448, 562
MalI	GATC	1 cut(s)	649
MboI	GATC	1 cut(s)	647
MboII	GAAGA	6 cut(s)	19, 76, 227, 241, 260, 556
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	3 cut(s)	99, 368, 452
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	77, 134, 151, 204, 220, 572
MroI	TCCGGA	1 cut(s)	667
MroNI	GCCGGC	1 cut(s)	355
MseI	TTAA	3 cut(s)	35, 363, 552
MspA1I	CMGCKG	2 cut(s)	113, 403
MspI	CCGG	2 cut(s)	356, 668
MwoI	GCNNNNNNNGC	1 cut(s)	176
NaeI	GCCGGC	1 cut(s)	357
NdeII	GATC	1 cut(s)	647
NgoMIV	GCCGGC	1 cut(s)	355
NlaIII	CATG	2 cut(s)	613, 647
PdiI	GCCGGC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	683
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	6 cut(s)	115, 172, 196, 402, 463, 577
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	3 cut(s)	314, 376, 731
RsaNI	GTAC	3 cut(s)	313, 375, 730
SaqAI	TTAA	3 cut(s)	35, 363, 552
SatI	GCNGC	6 cut(s)	114, 171, 195, 401, 462, 576
Sau3AI	GATC	1 cut(s)	647
ScaI	AGTACT	1 cut(s)	731
SchI	GAGTC	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	431
SfcI	CTRYAG	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	487, 755
SmoI	CTYRAG	2 cut(s)	487, 755
Sse9I	AATT	3 cut(s)	99, 368, 452
SsiI	CCGC	2 cut(s)	111, 171
StyI	CCWWGG	2 cut(s)	180, 556
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	434
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	3 cut(s)	99, 368, 452
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	683
Tru1I	TTAA	3 cut(s)	35, 363, 552
Tru9I	TTAA	3 cut(s)	35, 363, 552
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	5 cut(s)	113, 194, 400, 461, 575
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	189
ZrmI	AGTACT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.